Tsvi Tlusty - Publications

Affiliations: 
2000-2004 Center for Physics and Biology Rockefeller University, New York, NY, United States 
 2005-2013 Physics Weizmann Institute of Science, Rehovot, Israel 
 2011-2015 School of Natural Science Institute for Advanced Studies 
 2015- CSLM Institute for Basic Science 
Area:
Physical Biology; Information Theory; Condensed Matter
Website:
http://www.sns.ias.edu/~tlusty/

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Jee AY, Cho YK, Granick S, Tlusty T. Catalytic enzymes are active matter. Proceedings of the National Academy of Sciences of the United States of America. PMID 30385635 DOI: 10.1073/pnas.1814180115  1
2018 Condon A, Kirchner H, Larivière D, Marshall W, Noireaux V, Tlusty T, Fourmentin E. Will biologists become computer scientists? A truly interdisciplinary effort by computer scientists and biologists to understand how cells process information may yield new insights for both fields. Embo Reports. PMID 30061101 DOI: 10.15252/embr.201846628  0.01
2018 Dutta S, Eckmann JP, Libchaber A, Tlusty T. Green function of correlated genes in a minimal mechanical model of protein evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 29712824 DOI: 10.1073/pnas.1716215115  1
2018 Ha MY, Yoon TJ, Tlusty T, Jho Y, Lee WB. Widom Delta of Supercritical Gas-Liquid Coexistence. The Journal of Physical Chemistry Letters. PMID 29553732 DOI: 10.1021/acs.jpclett.8b00430  0.01
2018 Paneru G, Lee DY, Tlusty T, Pak HK. Lossless Brownian Information Engine. Physical Review Letters. 120: 020601. PMID 29376721 DOI: 10.1103/PhysRevLett.120.020601  0.01
2017 Jee AY, Dutta S, Cho YK, Tlusty T, Granick S. Enzyme leaps fuel antichemotaxis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29255047 DOI: 10.1073/pnas.1717844115  1
2017 Beatus T, Shani I, Bar-Ziv RH, Tlusty T. Two-dimensional flow of driven particles: a microfluidic pathway to the non-equilibrium frontier. Chemical Society Reviews. 46: 5620-5646. PMID 28869272 DOI: 10.1039/c7cs00374a  1
2016 Mitchell MR, Tlusty T, Leibler S. Strain analysis of protein structures and low dimensionality of mechanical allosteric couplings. Proceedings of the National Academy of Sciences of the United States of America. PMID 27655887 DOI: 10.1073/pnas.1609462113  1
2016 Savir Y, Tlusty T. Comment on "Ribosome utilizes the minimum free energy changes to achieve the highest decoding rate and fidelity". Physical Review. E. 93: 056401. PMID 27301009 DOI: 10.1103/PhysRevE.93.056401  1
2016 Tlusty T. Self-referring DNA and protein: a remark on physical and geometrical aspects. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 374. PMID 26857671 DOI: 10.1098/rsta.2015.0070  0.01
2016 Lampert A, Tlusty T. Where Two Are Fighting, the Third Wins: Stronger Selection Facilitates Greater Polymorphism in Traits Conferring Competition-Dispersal Tradeoffs. Plos One. 11: e0147970. PMID 26845157 DOI: 10.1371/journal.pone.0147970  1
2015 Friedlander T, Mayo AE, Tlusty T, Alon U. Evolution of bow-tie architectures in biology. Plos Computational Biology. 11: e1004055. PMID 25798588 DOI: 10.1371/journal.pcbi.1004055  1
2014 Joseph C, Tseng CY, Zocchi G, Tlusty T. Asymmetric effect of mechanical stress on the forward and reverse reaction catalyzed by an enzyme. Plos One. 9: e101442. PMID 25000118 DOI: 10.1371/journal.pone.0101442  1
2013 Friedlander T, Mayo AE, Tlusty T, Alon U. Mutation rules and the evolution of sparseness and modularity in biological systems. Plos One. 8: e70444. PMID 23936433 DOI: 10.1371/journal.pone.0070444  1
2013 Savir Y, Tlusty T. The ribosome as an optimal decoder: a lesson in molecular recognition. Cell. 153: 471-9. PMID 23582332 DOI: 10.1016/j.cell.2013.03.032  1
2013 Lampert A, Tlusty T. Resonance-induced multimodal body-size distributions in ecosystems. Proceedings of the National Academy of Sciences of the United States of America. 110: 205-9. PMID 23248320 DOI: 10.1073/pnas.1211761110  1
2012 Maeda YT, Tlusty T, Libchaber A. Effects of long DNA folding and small RNA stem-loop in thermophoresis. Proceedings of the National Academy of Sciences of the United States of America. 109: 17972-7. PMID 23071341 DOI: 10.1073/pnas.1215764109  1
2012 Iyer KV, Maharana S, Gupta S, Libchaber A, Tlusty T, Shivashankar GV. Modeling and experimental methods to probe the link between global transcription and spatial organization of chromosomes. Plos One. 7: e46628. PMID 23049710 DOI: 10.1371/journal.pone.0046628  1
2012 Savir Y, Waysbort N, Antebi YE, Tlusty T, Friedman N. Balancing speed and accuracy of polyclonal T cell activation: a role for extracellular feedback. Bmc Systems Biology. 6: 111. PMID 22925037 DOI: 10.1186/1752-0509-6-111  1
2011 Lampert A, Tlusty T. Density-dependent cooperation as a mechanism for persistence and coexistence. Evolution; International Journal of Organic Evolution. 65: 2750-9. PMID 21967418 DOI: 10.1111/j.1558-5646.2011.01364.x  1
2010 Savir Y, Tlusty T. RecA-mediated homology search as a nearly optimal signal detection system. Molecular Cell. 40: 388-96. PMID 21070965 DOI: 10.1016/j.molcel.2010.10.020  1
2010 Eckmann JP, Moses E, Stetter O, Tlusty T, Zbinden C. Leaders of neuronal cultures in a quorum percolation model. Frontiers in Computational Neuroscience. 4. PMID 20953239 DOI: 10.3389/fncom.2010.00132  1
2010 Tlusty T. A colorful origin for the genetic code: information theory, statistical mechanics and the emergence of molecular codes. Physics of Life Reviews. 7: 362-76. PMID 20558115 DOI: 10.1016/j.plrev.2010.06.002  0.01
2010 Rodríguez Martínez M, Soriano J, Tlusty T, Pilpel Y, Furman I. Messenger RNA fluctuations and regulatory RNAs shape the dynamics of a negative feedback loop. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 031924. PMID 20365787 DOI: 10.1103/PhysRevE.81.031924  1
2010 Savir Y, Noor E, Milo R, Tlusty T. Cross-species analysis traces adaptation of Rubisco toward optimality in a low-dimensional landscape. Proceedings of the National Academy of Sciences of the United States of America. 107: 3475-80. PMID 20142476 DOI: 10.1073/pnas.0911663107  1
2009 Beatus T, Tlusty T, Bar-Ziv R. Burgers shock waves and sound in a 2D microfluidic droplets ensemble. Physical Review Letters. 103: 114502. PMID 19792377 DOI: 10.1103/PhysRevLett.103.114502  1
2009 Lampert A, Tlusty T. Mutability as an altruistic trait in finite asexual populations. Journal of Theoretical Biology. 261: 414-22. PMID 19716831 DOI: 10.1016/j.jtbi.2009.08.027  1
2008 Soriano J, Rodríguez Martínez M, Tlusty T, Moses E. Development of input connections in neural cultures. Proceedings of the National Academy of Sciences of the United States of America. 105: 13758-63. PMID 18772389 DOI: 10.1073/pnas.0707492105  1
2008 Tlusty T. Casting polymer nets to optimize noisy molecular codes. Proceedings of the National Academy of Sciences of the United States of America. 105: 8238-43. PMID 18550822 DOI: 10.1073/pnas.0710274105  0.01
2008 Tadmor AD, Tlusty T. A coarse-grained biophysical model of E. coli and its application to perturbation of the rRNA operon copy number. Plos Computational Biology. 4: e1000038. PMID 18437222 DOI: 10.1371/journal.pcbi.1000038  1
2008 Tlusty T. A simple model for the evolution of molecular codes driven by the interplay of accuracy, diversity and cost. Physical Biology. 5: 016001. PMID 18367781 DOI: 10.1088/1478-3975/5/1/016001  0.01
2008 Tlusty T. Rate-distortion scenario for the emergence and evolution of noisy molecular codes. Physical Review Letters. 100: 048101. PMID 18352335 DOI: 10.1103/PhysRevLett.100.048101  0.01
2007 Beatus T, Bar-Ziv R, Tlusty T. Anomalous microfluidic phonons induced by the interplay of hydrodynamic screening and incompressibility. Physical Review Letters. 99: 124502. PMID 17930508 DOI: 10.1103/PhysRevLett.99.124502  1
2007 Tlusty T. A model for the emergence of the genetic code as a transition in a noisy information channel. Journal of Theoretical Biology. 249: 331-42. PMID 17826800 DOI: 10.1016/j.jtbi.2007.07.029  0.01
2007 Savir Y, Tlusty T. Conformational proofreading: the impact of conformational changes on the specificity of molecular recognition. Plos One. 2: e468. PMID 17520027 DOI: 10.1371/journal.pone.0000468  1
2006 Breskin I, Soriano J, Moses E, Tlusty T. Percolation in living neural networks. Physical Review Letters. 97: 188102. PMID 17155581  1
2006 Sagi D, Tlusty T, Stavans J. High fidelity of RecA-catalyzed recombination: a watchdog of genetic diversity. Nucleic Acids Research. 34: 5021-31. PMID 16990254 DOI: 10.1093/nar/gkl586  1
2006 Itzkovitz S, Tlusty T, Alon U. Coding limits on the number of transcription factors. Bmc Genomics. 7: 239. PMID 16984633 DOI: 10.1186/1471-2164-7-239  1
2006 Shinar G, Dekel E, Tlusty T, Alon U. Rules for biological regulation based on error minimization. Proceedings of the National Academy of Sciences of the United States of America. 103: 3999-4004. PMID 16537475 DOI: 10.1073/pnas.0506610103  1
2004 Tlusty T, Bar-Ziv R, Libchaber A. High-fidelity DNA sensing by protein binding fluctuations. Physical Review Letters. 93: 258103. PMID 15697950 DOI: 10.1103/PhysRevLett.93.258103  1
2002 Bar-Ziv R, Tlusty T, Libchaber A. Protein-DNA computation by stochastic assembly cascade. Proceedings of the National Academy of Sciences of the United States of America. 99: 11589-92. PMID 12186973 DOI: 10.1073/pnas.162369099  1
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