| Year |
Citation |
Score |
| 2023 |
Bouyssié D, Altıner P, Capella-Gutierrez S, Fernández JM, Hagemeijer YP, Horvatovich P, Hubálek M, Levander F, Mauri P, Palmblad M, Raffelsberger W, Rodríguez-Navas L, Di Silvestre D, Kunkli BT, Uszkoreit J, et al. WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows. Journal of Proteome Research. PMID 38038272 DOI: 10.1021/acs.jproteome.3c00636 |
0.658 |
|
| 2023 |
Jagtap PD, Hoopmann MR, Neely BA, Harvey A, Käll L, Perez-Riverol Y, Abajorga MK, Thomas JA, Weintraub ST, Palmblad M. The Association of Biomolecular Resource Facilities Proteome Informatics Research Group Study on Metaproteomics (iPRG-2020). Journal of Biomolecular Techniques : Jbt. 34. PMID 37969874 DOI: 10.7171/3fc1f5fe.a058bad4 |
0.676 |
|
| 2023 |
Kirkpatrick J, Stemmer PM, Searle BC, Herring LE, Martin L, Midha MK, Phinney BS, Shan B, Palmblad M, Wang Y, Jagtap PD, Neely BA. 2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Proteomics Study. Journal of Biomolecular Techniques : Jbt. 34. PMID 37435391 DOI: 10.7171/3fc1f5fe.9b78d780 |
0.667 |
|
| 2023 |
Neely BA, Dorfer V, Martens L, Bludau I, Bouwmeester R, Degroeve S, Deutsch EW, Gessulat S, Käll L, Palczynski P, Payne SH, Rehfeldt TG, Schmidt T, Schwämmle V, Uszkoreit J, ... ... Palmblad M, et al. Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of Proteome Research. PMID 36744821 DOI: 10.1021/acs.jproteome.2c00711 |
0.754 |
|
| 2023 |
Hoopmann MR, Schwämmle V, Palmblad M. 2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software. Journal of Proteome Research. 22: 285-286. PMID 36734095 DOI: 10.1021/acs.jproteome.3c00033 |
0.599 |
|
| 2023 |
Rehfeldt TG, Gabriels R, Bouwmeester R, Gessulat S, Neely BA, Palmblad M, Perez-Riverol Y, Schmidt T, Vizcaíno JA, Deutsch EW. ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of Proteome Research. PMID 36693629 DOI: 10.1021/acs.jproteome.2c00629 |
0.668 |
|
| 2022 |
Forcisi S, Moritz F, Thompson CJ, Kanawati B, Uhl J, Afonso C, Bader CD, Barsch A, Boughton BA, Chu RK, Ferey J, Fernandez-Lima F, Guéguen C, Heintz D, Gomez-Hernandez M, ... ... Palmblad M, et al. Large-Scale Interlaboratory DI-FT-ICR MS Comparability Study Employing Various Systems. Journal of the American Society For Mass Spectrometry. PMID 36371691 DOI: 10.1021/jasms.2c00082 |
0.66 |
|
| 2022 |
Palmblad M, Asein E, Bergman NP, Ivanova A, Ramasauskas L, Reyes HM, Ruchti S, Soto-Jácome L, Bergquist J. Semantic Annotation of Experimental Methods in Analytical Chemistry. Analytical Chemistry. 94: 15464-15471. PMID 36281827 DOI: 10.1021/acs.analchem.2c03565 |
0.472 |
|
| 2022 |
Neely BA, Palmblad M. Machine Learning in Proteomics and Metabolomics. Journal of Proteome Research. PMID 36193949 DOI: 10.1021/acs.jproteome.2c00566 |
0.578 |
|
| 2022 |
Marissen R, Varunjikar MS, Laros JFJ, Rasinger JD, Neely BA, Palmblad M. compareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets. Journal of Proteome Research. PMID 36173614 DOI: 10.1021/acs.jproteome.2c00457 |
0.817 |
|
| 2021 |
Lamprecht AL, Palmblad M, Ison J, Schwämmle V, Al Manir MS, Altintas I, Baker CJO, Ben Hadj Amor A, Capella-Gutierrez S, Charonyktakis P, Crusoe MR, Gil Y, Goble C, Griffin TJ, Groth P, et al. Perspectives on automated composition of workflows in the life sciences. F1000research. 10: 897. PMID 34804501 DOI: 10.12688/f1000research.54159.1 |
0.603 |
|
| 2021 |
Neely BA, Palmblad M. Rewinding the Molecular Clock: Looking at Pioneering Molecular Phylogenetics Experiments in the Light of Proteomics. Journal of Proteome Research. 20: 4640-4645. PMID 34523928 DOI: 10.1021/acs.jproteome.1c00528 |
0.655 |
|
| 2021 |
Kasalica V, Schwämmle V, Palmblad M, Ison J, Lamprecht AL. APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry. Journal of Proteome Research. PMID 33720735 DOI: 10.1021/acs.jproteome.0c00983 |
0.63 |
|
| 2021 |
Marissen R, Palmblad M. mzRecal: universal MS1 recalibration in mzML using identified peptides in mzIdentML as internal calibrants. Bioinformatics (Oxford, England). PMID 33538780 DOI: 10.1093/bioinformatics/btab056 |
0.36 |
|
| 2020 |
Lippold S, de Ru AH, Nouta J, van Veelen PA, Palmblad M, Wuhrer M, de Haan N. Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification. Beilstein Journal of Organic Chemistry. 16: 3038-3051. PMID 33363672 DOI: 10.3762/bjoc.16.253 |
0.363 |
|
| 2020 |
Hoopmann MR, Kusebauch U, Palmblad M, Bandeira N, Shteynberg DD, He L, Xia B, Stoychev SH, Omenn GS, Weintraub ST, Moritz RL. Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project. Journal of Proteome Research. PMID 33166149 DOI: 10.1021/acs.jproteome.0c00648 |
0.345 |
|
| 2020 |
Mohammed Y, Palmblad M. Using the Object-Oriented PowerShell for Simple Proteomics Data Analysis. Methods in Molecular Biology (Clifton, N.J.). 2051: 389-405. PMID 31552639 DOI: 10.1007/978-1-4939-9744-2_17 |
0.649 |
|
| 2020 |
Henneman A, Palmblad M. Retention Time Prediction and Protein Identification. Methods in Molecular Biology (Clifton, N.J.). 2051: 115-132. PMID 31552626 DOI: 10.1007/978-1-4939-9744-2_4 |
0.335 |
|
| 2019 |
Ison J, Ménager H, Brancotte B, Jaaniso E, Salumets A, Raček T, Lamprecht AL, Palmblad M, Kalaš M, Chmura P, Hancock JM, Schwämmle V, Ienasescu HI. Community curation of bioinformatics software and data resources. Briefings in Bioinformatics. PMID 31624831 DOI: 10.1093/Bib/Bbz075 |
0.653 |
|
| 2019 |
Tsiamis V, Ienasescu HI, Gabrielaitis D, Palmblad M, Schwämmle V, Ison J. A Thousand and One Software for Proteomics: Tales of the Toolmakers of Science. Journal of Proteome Research. PMID 31429284 DOI: 10.1021/Acs.Jproteome.9B00219 |
0.679 |
|
| 2019 |
Belghit I, Lock EJ, Fumière O, Lecrenier MC, Renard P, Dieu M, Berntssen MHG, Palmblad M, Rasinger JD. Species-Specific Discrimination of Insect Meals for Aquafeeds by Direct Comparison of Tandem Mass Spectra. Animals : An Open Access Journal From Mdpi. 9. PMID 31067722 DOI: 10.3390/Ani9050222 |
0.756 |
|
| 2019 |
Palmblad M. Combining Text Mining and Computational Chemistry Visually and Semantically Enriches Analytical Chemistry Literature Searches. Analytical Chemistry. PMID 30835438 DOI: 10.1021/Acs.Analchem.8B05818 |
0.367 |
|
| 2018 |
Palmblad M, Lamprecht AL, Ison J, Schwämmle V. Automated workflow composition in mass spectrometry based proteomics. Bioinformatics (Oxford, England). PMID 30060113 DOI: 10.1093/Bioinformatics/Bty646 |
0.696 |
|
| 2018 |
Mohammed Y, Palmblad M. Visualization and application of amino acid retention coefficients obtained from modeling of peptide retention. Journal of Separation Science. PMID 30047222 DOI: 10.1002/Jssc.201800488 |
0.692 |
|
| 2018 |
Lee JY, Choi H, Colangelo CM, Davis D, Hoopmann MR, Käll L, Lam H, Payne SH, Perez-Riverol Y, The M, Wilson R, Weintraub ST, Palmblad M. ABRF Proteome Informatics Research Group (iPRG) 2016 Study: Inferring Proteoforms from Bottom-up Proteomics Data. Journal of Biomolecular Techniques : Jbt. PMID 29977167 DOI: 10.7171/Jbt.18-2902-003 |
0.416 |
|
| 2018 |
The M, Edfors F, Perez-Riverol Y, Payne SH, Hoopmann MR, Palmblad M, Forsström B, Käll L. A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms. Journal of Proteome Research. PMID 29631402 DOI: 10.1021/Acs.Jproteome.7B00899 |
0.407 |
|
| 2018 |
Palmblad M, van Eck NJ. Bibliometric Analyses Reveal Patterns of Collaboration between ASMS Members. Journal of the American Society For Mass Spectrometry. 29: 447-454. PMID 29305796 DOI: 10.1007/S13361-017-1846-1 |
0.671 |
|
| 2018 |
Travin D, Popov I, Guler AT, Medvedev D, van der Plas-Duivesteijn S, Varela M, Kolder ICRM, Meijer AH, Spaink HP, Palmblad M. COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies. Journal of Proteome Research. 17: 739-744. PMID 29083911 DOI: 10.1021/Acs.Jproteome.7B00615 |
0.77 |
|
| 2017 |
Mohammed Y, van Vlijmen BJ, Yang J, Percy AJ, Palmblad M, Borchers CH, Rosendaal FR. Multiplexed targeted proteomic assay to assess coagulation factor concentrations and thrombosis-associated cancer. Blood Advances. 1: 1080-1087. PMID 29296750 DOI: 10.1182/Bloodadvances.2017007955 |
0.679 |
|
| 2017 |
Hussaarts L, Kaisar MMM, Guler AT, Dalebout H, Everts B, Deelder AM, Palmblad M, Yazdanbakhsh M. Human Dendritic Cells with Th2-Polarizing Capacity: Analysis Using Label-Free Quantitative Proteomics. International Archives of Allergy and Immunology. 174: 170-182. PMID 29130972 DOI: 10.1159/000479512 |
0.733 |
|
| 2017 |
Vizcaíno JA, Walzer M, Jiménez RC, Bittremieux W, Bouyssié D, Carapito C, Corrales F, Ferro M, Heck AJR, Horvatovich P, Hubalek M, Lane L, Laukens K, Levander F, Lisacek F, ... ... Palmblad M, et al. A community proposal to integrate proteomics activities in ELIXIR. F1000research. 6. PMID 28713550 DOI: 10.12688/F1000Research.11751.1 |
0.645 |
|
| 2016 |
Mohammed Y, Palmblad M. Visualizing and comparing results of different peptide identification methods. Briefings in Bioinformatics. PMID 28011752 DOI: 10.1093/Bib/Bbw115 |
0.717 |
|
| 2016 |
Choi M, Eren-Dogu ZF, Colangelo CM, Cottrell JS, Hoopmann MR, Kapp EA, Kim S, Lam H, Neubert TA, Palmblad M, Phinney BS, Weintraub ST, MacLean B, Vitek O. ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of differentially abundant proteins in label-free quantitative LC-MS/MS experiments. Journal of Proteome Research. PMID 27990823 DOI: 10.1021/Acs.Jproteome.6B00881 |
0.422 |
|
| 2016 |
Kilgour DP, Hughes S, Kilgour SL, Mackay CL, Palmblad M, Tran BQ, Goo YA, Ernst RK, Clarke DJ, Goodlett DR. Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 27924495 DOI: 10.1007/S13361-016-1549-Z |
0.382 |
|
| 2016 |
Kolder IC, van der Plas-Duivesteijn SJ, Tan G, Wiegertjes GF, Forlenza M, Guler AT, Travin DY, Nakao M, Moritomo T, Irnazarow I, den Dunnen JT, Anvar SY, Jansen HJ, Dirks RP, Palmblad M, et al. A full-body transcriptome and proteome resource for the European common carp. Bmc Genomics. 17: 701. PMID 27590662 DOI: 10.1186/S12864-016-3038-Y |
0.771 |
|
| 2016 |
Rasinger JD, Marbaix H, Dieu M, Fumière O, Mauro S, Palmblad M, Raes M, Berntssen MH. Species and tissues specific differentiation of processed animal proteins in aquafeeds using proteomics tools. Journal of Proteomics. PMID 27268957 DOI: 10.1016/J.Jprot.2016.05.036 |
0.373 |
|
| 2016 |
Guler AT, Waaijer CJ, Palmblad M. Scientific workflows for bibliometrics. Scientometrics. 107: 385-398. PMID 27122644 DOI: 10.1007/S11192-016-1885-6 |
0.776 |
|
| 2016 |
Yılmaz Ş, Victor B, Hulstaert N, Vandermarliere E, Barsnes H, Degroeve S, Gupta S, Sticker A, Gabriël S, Dorny P, Palmblad M, Martens L. A pipeline for differential proteomics in unsequenced species. Journal of Proteome Research. PMID 27089233 DOI: 10.1021/Acs.Jproteome.6B00140 |
0.77 |
|
| 2016 |
Nessen MA, van der Zwaan DJ, Greevers S, Dalebout H, Staats M, Kok E, Palmblad M. Authentication of closely related fish and derived fish products using tandem mass spectrometry and spectral library matching. Journal of Agricultural and Food Chemistry. PMID 27086584 DOI: 10.1021/Acs.Jafc.5B05322 |
0.436 |
|
| 2016 |
Ohana D, Dalebout H, Marissen RJ, Wulff T, Bergquist J, Deelder AM, Palmblad M. Identification of meat products by shotgun spectral matching. Food Chemistry. 203: 28-34. PMID 26948585 DOI: 10.1016/J.Foodchem.2016.01.138 |
0.785 |
|
| 2016 |
Plas-Duivesteijn SJ, Wulff T, Klychnikov O, Ohana D, Dalebout H, van Veelen PA, de Keijzer J, Nessen MA, van der Burgt YE, Deelder AM, Palmblad M. Differentiating samples and experimental protocols by direct comparison of tandem mass spectra. Rapid Communications in Mass Spectrometry : Rcm. 30: 731-8. PMID 26864526 DOI: 10.1002/Rcm.7494 |
0.809 |
|
| 2016 |
Palmblad M, Güler AT, Lamprecht A, Davidsen K, Ison J, Schwämmle V. Functional software annotation and automatic workflow generation for mass spectrometry data processing F1000research. 5. DOI: 10.7490/F1000Research.1113006.1 |
0.794 |
|
| 2016 |
Guler AT, Waaijer CJF, Mohammed Y, Palmblad M. Automating bibliometric analyses using Taverna scientific workflows: A tutorial on integrating Web Services Journal of Informetrics. 10: 830-841. DOI: 10.1016/J.Joi.2016.05.002 |
0.767 |
|
| 2016 |
Guler AT, Waaijer CJF, Palmblad M. Scientific workflows for bibliometrics Scientometrics. 107: 385-398. DOI: 10.1007/s11192-016-1885-6 |
0.766 |
|
| 2015 |
Nicolardi S, Bogdanov B, Deelder AM, Palmblad M, van der Burgt YE. Developments in FTICR-MS and Its Potential for Body Fluid Signatures. International Journal of Molecular Sciences. 16: 27133-44. PMID 26580595 DOI: 10.3390/Ijms161126012 |
0.722 |
|
| 2015 |
Jansen BC, Reiding KR, Bondt A, Hipgrave Ederveen AL, Palmblad M, Falck D, Wuhrer M. MassyTools: A High-Throughput Targeted Data Processing Tool for Relative Quantitation and Quality Control Developed for Glycomic and Glycoproteomic MALDI-MS. Journal of Proteome Research. PMID 26565759 DOI: 10.1021/Acs.Jproteome.5B00658 |
0.379 |
|
| 2015 |
Holl S, Mohammed Y, Zimmermann O, Palmblad M. Scientific workflow optimization for improved peptide and protein identification. Bmc Bioinformatics. 16: 284. PMID 26335531 DOI: 10.1186/S12859-015-0714-X |
0.688 |
|
| 2015 |
Waaijer CJ, Palmblad M. Bibliometric mapping: eight decades of analytical chemistry, with special focus on the use of mass spectrometry. Analytical Chemistry. 87: 4588-96. PMID 25745805 DOI: 10.1021/Ac5040314 |
0.379 |
|
| 2015 |
Nicolardi S, Switzar L, Deelder AM, Palmblad M, van der Burgt YE. Top-down MALDI-in-source decay-FTICR mass spectrometry of isotopically resolved proteins. Analytical Chemistry. 87: 3429-37. PMID 25719938 DOI: 10.1021/Ac504708Y |
0.714 |
|
| 2014 |
Nicolardi S, Deelder AM, Palmblad M, van der Burgt YE. Structural analysis of an intact monoclonal antibody by online electrochemical reduction of disulfide bonds and Fourier transform ion cyclotron resonance mass spectrometry. Analytical Chemistry. 86: 5376-82. PMID 24780057 DOI: 10.1021/Ac500383C |
0.695 |
|
| 2014 |
Mohammed Y, Domański D, Jackson AM, Smith DS, Deelder AM, Palmblad M, Borchers CH. PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments. Journal of Proteomics. 106: 151-61. PMID 24769191 DOI: 10.1016/J.Jprot.2014.04.018 |
0.699 |
|
| 2014 |
van der Plas-Duivesteijn SJ, Mohammed Y, Dalebout H, Meijer A, Botermans A, Hoogendijk JL, Henneman AA, Deelder AM, Spaink HP, Palmblad M. Identifying proteins in zebrafish embryos using spectral libraries generated from dissected adult organs and tissues. Journal of Proteome Research. 13: 1537-44. PMID 24460240 DOI: 10.1021/Pr4010585 |
0.768 |
|
| 2014 |
Cynthia Martin F, Hiller M, Spitali P, Oonk S, Dalebout H, Palmblad M, Chaouch A, Guglieri M, Straub V, Lochmüller H, Niks EH, Verschuuren JJ, Aartsma-Rus A, Deelder AM, van der Burgt YE, et al. Fibronectin is a serum biomarker for Duchenne muscular dystrophy. Proteomics. Clinical Applications. 8: 269-78. PMID 24458521 DOI: 10.1002/Prca.201300072 |
0.629 |
|
| 2014 |
Yılmaz Ş, Victor B, Hulstaert N, Gonnelli G, Dorny P, Palmblad M, Martens L. Comparing fragmentation spectra from two parasitic worm species to discover unique peptides F1000research. 5. DOI: 10.7490/F1000Research.1094933.1 |
0.782 |
|
| 2014 |
Holl S, Zimmermann O, Palmblad M, Mohammed Y, Hofmann-Apitius M. A new optimization phase for scientific workflow management systems Future Generation Computer Systems. 36: 352-362. DOI: 10.1016/J.Future.2013.09.005 |
0.633 |
|
| 2014 |
Nicolardi S, Bladergroen MR, Deelder AM, Tollenaar RAEM, Palmblad M, Mesker W, van der Burgt YEM. SPE-MALDI Profiling of Serum Peptides and Proteins by Ultrahigh Resolution FTICR-MS Chromatographia. 78: 445-449. DOI: 10.1007/S10337-014-2812-8 |
0.45 |
|
| 2013 |
Palmblad M, Henkel CV, Dirks RP, Meijer AH, Deelder AM, Spaink HP. Parallel deep transcriptome and proteome analysis of zebrafish larvae. Bmc Research Notes. 6: 428. PMID 24156766 DOI: 10.1186/1756-0500-6-428 |
0.601 |
|
| 2013 |
Wulff T, Nielsen ME, Deelder AM, Jessen F, Palmblad M. Authentication of fish products by large-scale comparison of tandem mass spectra. Journal of Proteome Research. 12: 5253-9. PMID 24032411 DOI: 10.1021/Pr4006525 |
0.441 |
|
| 2013 |
Victor B, Dorny P, Kanobana K, Polman K, Lindh J, Deelder AM, Palmblad M, Gabriël S. Use of expressed sequence tags as an alternative approach for the identification of Taenia solium metacestode excretion/secretion proteins. Bmc Research Notes. 6: 224. PMID 23742691 DOI: 10.1186/1756-0500-6-224 |
0.757 |
|
| 2013 |
Jónasdóttir HS, Nicolardi S, Jonker W, Derks R, Palmblad M, Ioan-Facsinay A, Toes R, van der Burgt YE, Deelder AM, Mayboroda OA, Giera M. Detection and structural elucidation of esterified oxylipids in human synovial fluid by electrospray ionization-fourier transform ion-cyclotron mass spectrometry and liquid chromatography-ion trap-MS(3): detection of esterified hydroxylated docosapentaenoic acid containing phospholipids. Analytical Chemistry. 85: 6003-10. PMID 23678963 DOI: 10.1021/Ac400826Z |
0.696 |
|
| 2013 |
Mohammed Y, Palmblad M. Simple proteomics data analysis in the object-oriented PowerShell. Methods in Molecular Biology (Clifton, N.J.). 1007: 379-91. PMID 23666736 DOI: 10.1007/978-1-62703-392-3_17 |
0.645 |
|
| 2013 |
Henneman AA, Palmblad M. Retention time prediction and protein identification. Methods in Molecular Biology (Clifton, N.J.). 1007: 101-18. PMID 23666723 DOI: 10.1007/978-1-62703-392-3_4 |
0.445 |
|
| 2013 |
Johansson Å, Enroth S, Palmblad M, Deelder AM, Bergquist J, Gyllensten U. Identification of genetic variants influencing the human plasma proteome. Proceedings of the National Academy of Sciences of the United States of America. 110: 4673-8. PMID 23487758 DOI: 10.1073/Pnas.1217238110 |
0.56 |
|
| 2013 |
Mostovenko E, Hassan C, Rattke J, Deelder AM, van Veelen PA, Palmblad M. Comparison of peptide and protein fractionation methods in proteomics Eupa Open Proteomics. 1: 30-37. DOI: 10.1016/J.Euprot.2013.09.001 |
0.787 |
|
| 2012 |
Mohammed Y, Mostovenko E, Henneman AA, Marissen RJ, Deelder AM, Palmblad M. Cloud parallel processing of tandem mass spectrometry based proteomics data. Journal of Proteome Research. 11: 5101-8. PMID 22916831 DOI: 10.1021/Pr300561Q |
0.805 |
|
| 2012 |
Victor B, Kanobana K, Gabriël S, Polman K, Deckers N, Dorny P, Deelder AM, Palmblad M. Proteomic analysis of Taenia solium metacestode excretion-secretion proteins. Proteomics. 12: 1860-9. PMID 22623400 DOI: 10.1002/Pmic.201100496 |
0.758 |
|
| 2012 |
de Bruin JS, Deelder AM, Palmblad M. Scientific workflow management in proteomics. Molecular & Cellular Proteomics : McP. 11: M111.010595. PMID 22411703 DOI: 10.1074/Mcp.M111.010595 |
0.765 |
|
| 2012 |
Palmblad M, Deelder AM. Molecular phylogenetics by direct comparison of tandem mass spectra. Rapid Communications in Mass Spectrometry : Rcm. 26: 728-32. PMID 22368051 DOI: 10.1002/Rcm.6162 |
0.405 |
|
| 2012 |
Victor B, Gabriël S, Kanobana K, Mostovenko E, Polman K, Dorny P, Deelder AM, Palmblad M. Partially sequenced organisms, decoy searches and false discovery rates. Journal of Proteome Research. 11: 1991-5. PMID 22339108 DOI: 10.1021/Pr201035R |
0.793 |
|
| 2012 |
Selman MH, Derks RJ, Bondt A, Palmblad M, Schoenmaker B, Koeleman CA, van de Geijn FE, Dolhain RJ, Deelder AM, Wuhrer M. Fc specific IgG glycosylation profiling by robust nano-reverse phase HPLC-MS using a sheath-flow ESI sprayer interface. Journal of Proteomics. 75: 1318-29. PMID 22120122 DOI: 10.1016/J.Jprot.2011.11.003 |
0.332 |
|
| 2012 |
Mostovenko E, Scott HC, Klychnikov O, Dalebout H, Deelder AM, Palmblad M. Protein fractionation for quantitative plasma proteomics by semi-selective precipitation Journal of Proteomics and Bioinformatics. 5: 217-221. DOI: 10.4172/Jpb.1000239 |
0.752 |
|
| 2011 |
Nicolardi S, Palmblad M, Hensbergen PJ, Tollenaar RA, Deelder AM, van der Burgt YE. Precision profiling and identification of human serum peptides using Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 25: 3457-63. PMID 22095492 DOI: 10.1002/Rcm.5246 |
0.709 |
|
| 2011 |
Mostovenko E, Deelder AM, Palmblad M. Protein expression dynamics during Escherichia coli glucose-lactose diauxie. Bmc Microbiology. 11: 126. PMID 21631920 DOI: 10.1186/1471-2180-11-126 |
0.73 |
|
| 2011 |
Martin FC, Oonk S, Hoen PAC’, Nadarajah VD, Chaouch A, Lochmüller H, Dalebout H, Burgt YEMd, Palmblad M, Deelder AM. P1.49 Mass spectrometry based clinical proteomics for biomarker discovery in Duchenne muscular dystrophy Neuromuscular Disorders. 21: 656-656. DOI: 10.1016/J.Nmd.2011.06.809 |
0.363 |
|
| 2010 |
Blanckenburg B, van der Burgt YE, Deelder AM, Palmblad M. "Lossless" compression of high resolution mass spectra of small molecules. Metabolomics : Official Journal of the Metabolomic Society. 6: 335-340. PMID 20676216 DOI: 10.1007/S11306-010-0202-2 |
0.675 |
|
| 2010 |
Nicolardi S, Palmblad M, Dalebout H, Bladergroen M, Tollenaar RA, Deelder AM, van der Burgt YE. Quality control based on isotopic distributions for high-throughput MALDI-TOF and MALDI-FTICR serum peptide profiling. Journal of the American Society For Mass Spectrometry. 21: 1515-25. PMID 20541438 DOI: 10.1016/J.Jasms.2010.05.004 |
0.691 |
|
| 2010 |
Palmblad M, van der Burgt YE, Mostovenko E, Dalebout H, Deelder AM. A novel mass spectrometry cluster for high-throughput quantitative proteomics. Journal of the American Society For Mass Spectrometry. 21: 1002-11. PMID 20194034 DOI: 10.1016/J.Jasms.2010.02.001 |
0.812 |
|
| 2010 |
Selman MHJ, McDonnell LA, Palmblad M, Ruhaak RL, Deelder AM, Wuhrer M. Immunoglobulin G glycopeptide profiling by matrix-assisted laser desorption Ionization fourier transform Ion cyclotron resonance mass spectrometry Analytical Chemistry. 82: 1073-1081. PMID 20058878 DOI: 10.1021/Ac9024413 |
0.382 |
|
| 2010 |
Palmblad M, Drijfhout JW, Deelder AM. High resolution mass spectrometry for rapid characterization of combinatorial peptide libraries. Journal of Combinatorial Chemistry. 12: 65-8. PMID 19863106 DOI: 10.1021/Cc9001235 |
0.427 |
|
| 2009 |
Palmblad M, Tiss A, Cramer R. Mass spectrometry in clinical proteomics - from the present to the future. Proteomics. Clinical Applications. 3: 6-17. PMID 21136932 DOI: 10.1002/Prca.200800090 |
0.369 |
|
| 2009 |
Nevedomskaya E, Derks R, Deelder AM, Mayboroda OA, Palmblad M. Alignment of capillary electrophoresis-mass spectrometry datasets using accurate mass information. Analytical and Bioanalytical Chemistry. 395: 2527-33. PMID 19826795 DOI: 10.1007/S00216-009-3166-1 |
0.405 |
|
| 2009 |
Palmblad M, van der Burgt YE, Dalebout H, Derks RJ, Schoenmaker B, Deelder AM. Improving mass measurement accuracy in mass spectrometry based proteomics by combining open source tools for chromatographic alignment and internal calibration. Journal of Proteomics. 72: 722-4. PMID 19167529 DOI: 10.1016/J.Jprot.2008.12.011 |
0.722 |
|
| 2009 |
van der Burgt YE, Palmblad M, Dalebout H, Heeren RM, Deelder AM. Electron capture dissociation of peptide hormone changes upon opening of the tocin ring and complexation with transition metal cations. Rapid Communications in Mass Spectrometry : Rcm. 23: 31-8. PMID 19051230 DOI: 10.1002/Rcm.3849 |
0.66 |
|
| 2008 |
Bindschedler LV, Palmblad M, Cramer R. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Phytochemistry. 69: 1962-72. PMID 18538804 DOI: 10.1016/J.Phytochem.2008.04.007 |
0.37 |
|
| 2007 |
Palmblad M, Bindschedler LV, Cramer R. Quantitative proteomics using uniform (15)N-labeling, MASCOT, and the trans-proteomic pipeline. Proteomics. 7: 3462-9. PMID 17726679 DOI: 10.1002/Pmic.200700180 |
0.423 |
|
| 2007 |
Palmblad M, Mills DJ, Bindschedler LV, Cramer R. Chromatographic alignment of LC-MS and LC-MS/MS datasets by genetic algorithm feature extraction. Journal of the American Society For Mass Spectrometry. 18: 1835-43. PMID 17720530 DOI: 10.1016/J.Jasms.2007.07.018 |
0.414 |
|
| 2007 |
Palmblad M, Cramer R. Liquid matrix deposition on conductive hydrophobic surfaces for tuning and quantitation in UV-MALDI mass spectrometry. Journal of the American Society For Mass Spectrometry. 18: 693-7. PMID 17223354 DOI: 10.1016/J.Jasms.2006.11.013 |
0.373 |
|
| 2007 |
Palmblad M. Retention time prediction and protein identification. Methods in Molecular Biology (Clifton, N.J.). 367: 195-207. PMID 17185777 DOI: 10.1385/1-59745-275-0:195 |
0.325 |
|
| 2006 |
Palmblad M, Bindschedler LV, Gibson TM, Cramer R. Automatic internal calibration in liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry of protein digests Rapid Communications in Mass Spectrometry. 20: 3076-3080. PMID 16988928 DOI: 10.1002/Rcm.2707 |
0.449 |
|
| 2005 |
Palmblad M, Buchholz BA, Hillegonds DJ, Vogel JS. Neuroscience and accelerator mass spectrometry. Journal of Mass Spectrometry : Jms. 40: 154-9. PMID 15706618 DOI: 10.1002/Jms.734 |
0.325 |
|
| 2005 |
Palmblad M, Vogel JS. Quantitation of binding, recovery and desalting efficiency of peptides and proteins in solid phase extraction micropipette tips. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 814: 309-13. PMID 15639453 DOI: 10.1016/J.Jchromb.2004.10.052 |
0.381 |
|
| 2004 |
Nilsson S, Ramström M, Palmblad M, Axelsson O, Bergquist J. Explorative study of the protein composition of amniotic fluid by liquid chromatography electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Journal of Proteome Research. 3: 884-9. PMID 15359745 DOI: 10.1021/Pr0499545 |
0.571 |
|
| 2004 |
Palmblad M, Ramström M, Bailey CG, McCutchen-Maloney SL, Bergquist J, Zeller LC. Protein identification by liquid chromatography-mass spectrometry using retention time prediction. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 803: 131-5. PMID 15026006 DOI: 10.1016/J.Jchromb.2003.11.007 |
0.607 |
|
| 2004 |
Vogel JS, Ognibene T, Palmblad M, Reimer P. Counting Statistics and Ion Interval Density in AMS Radiocarbon. 46: 1103-1109. DOI: 10.1017/S0033822200033038 |
0.329 |
|
| 2003 |
Grant PG, Palmblad M, Murov S, Hillegonds DJ, Ueda DL, Vogel JS, Bench G. Alpha-particle energy loss measurement of microgram depositions of biomolecules. Analytical Chemistry. 75: 4519-24. PMID 14632059 DOI: 10.1021/Ac034170G |
0.31 |
|
| 2003 |
Johansson O, Borgström M, Lomoth R, Palmblad M, Bergquist J, Hammarström L, Sun L, Akermark B. Electron donor-acceptor dyads based on ruthenium(II) bipyridine and terpyridine complexes bound to naphthalenediimide. Inorganic Chemistry. 42: 2908-18. PMID 12716183 DOI: 10.1021/Ic020420K |
0.422 |
|
| 2003 |
Ramström M, Palmblad M, Markides KE, Håkansson P, Bergquist J. Protein identification in cerebrospinal fluid using packed capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry. Proteomics. 3: 184-90. PMID 12601811 DOI: 10.1002/Pmic.200390027 |
0.736 |
|
| 2003 |
Önnerud H, Palmblad M, Gellerstedt G. Investigation of lignin oligomers using electrospray ionisation mass spectrometry Holzforschung. 57: 37-43. DOI: 10.1515/Hf.2003.006 |
0.38 |
|
| 2003 |
Johansson O, Borgström M, Lomoth R, Palmblad M, Bergquist J, Hammarström L, Sun L, Åkermark B. Electron donor-acceptor dyads based on ruthenium(II) bipyridine and terpyridine complexes bound to naphthalenediimide Inorganic Chemistry. 42: 2908-2918. DOI: 10.1021/ic020420k |
0.332 |
|
| 2003 |
Palmblad M, Bergquist J. Identification and Characterization of Peptides and Proteins using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Journal of Chromatography Library. 68: 199-240. DOI: 10.1016/S0301-4770(03)80012-X |
0.629 |
|
| 2002 |
Wetterhall M, Palmblad M, Håkansson P, Markides KE, Bergquist J. Rapid analysis of tryptically digested cerebrospinal fluid using capillary electrophoresis-electrospray ionization-Fourier transform ion cyclotron resonance-mass spectrometry. Journal of Proteome Research. 1: 361-6. PMID 12645892 DOI: 10.1021/Pr025526S |
0.749 |
|
| 2002 |
Palmblad M, Ramström M, Markides KE, Håkansson P, Bergquist J. Prediction of chromatographic retention and protein identification in liquid chromatography/mass spectrometry. Analytical Chemistry. 74: 5826-30. PMID 12463368 DOI: 10.1021/Ac0256890 |
0.779 |
|
| 2002 |
Bergquist J, Palmblad M, Wetterhall M, Håkansson P, Markides KE. Peptide mapping of proteins in human body fluids using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Mass Spectrometry Reviews. 21: 2-15. PMID 12210611 DOI: 10.1002/Mas.10016 |
0.781 |
|
| 2002 |
Palmblad M, Tsybin YO, Ramström M, Bergquist J, Håkansson P. Liquid chromatography and electron-capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 16: 988-92. PMID 11968132 DOI: 10.1002/Rcm.667 |
0.776 |
|
| 2002 |
Palmblad M, Westlind-Danielsson A, Bergquist J. Oxidation of methionine 35 attenuates formation of amyloid beta -peptide 1-40 oligomers. The Journal of Biological Chemistry. 277: 19506-10. PMID 11912198 DOI: 10.1074/Jbc.M112218200 |
0.569 |
|
| 2002 |
Palmblad M, Buijs J, Håkansson P. Automatic analysis of hydrogen/deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions. Journal of the American Society For Mass Spectrometry. 12: 1153-62. PMID 11720389 DOI: 10.1016/S1044-0305(01)00301-4 |
0.66 |
|
| 2001 |
Ramström M, Palmblad M, Amirkhani A, Tsybin YO, Markides KE, Håkansson P, Bergquist J. Micro-capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry--a powerful tool for peptide and protein identification. Acta Biochimica Polonica. 48: 1101-1104. DOI: 10.18388/abp.2001_3871 |
0.542 |
|
| 2000 |
Palmblad M, Wetterhall M, Markides K, Håkansson P, Bergquist J. Analysis of enzymatically digested proteins and protein mixtures using a 9.4 Tesla Fourier transform ion cyclotron mass spectrometer. Rapid Communications in Mass Spectrometry : Rcm. 14: 1029-34. PMID 10861983 DOI: 10.1002/1097-0231(20000630)14:12<1029::Aid-Rcm984>3.0.Co;2-# |
0.734 |
|
| 2000 |
Håkansson K, Axelsson J, Palmblad M, Håkansson P. Mechanistic studies of multipole storage assisted dissociation. Journal of the American Society For Mass Spectrometry. 11: 210-7. PMID 10697816 DOI: 10.1016/S1044-0305(99)00144-0 |
0.72 |
|
| 2000 |
Palmblad M, Håkansson K, Håkansson P, Feng X, Cooper HJ, Giannakopulos AE, Green PS, Derrick PJ. A 9.4 T Fourier Transform Ion Cyclotron Resonance Mass Spectrometer: Description and Performance European Journal of Mass Spectrometry. 6: 267-275. DOI: 10.1255/Ejms.348 |
0.792 |
|
| 1999 |
Axelsson J, Hakansson K, Palmblad M, Hakansson P. A method to significantly lessen the sample contamination of the vacuum interface of an on-axis electrospray ion source by adding a mechanical shutter Rapid Communications in Mass Spectrometry : Rcm. 13: 1550. PMID 10407354 DOI: 10.1002/(Sici)1097-0231(19990730)13:14<1550::Aid-Rcm651>3.0.Co;2-O |
0.713 |
|
| 1999 |
Axelsson J, Palmblad M, Håkansson K, Håkansson P. Electron capture dissociation of substance P using a commercially available Fourier transform ion cyclotron resonance mass spectrometer. Rapid Communications in Mass Spectrometry : Rcm. 13: 474-7. PMID 10204243 DOI: 10.1002/(Sici)1097-0231(19990330)13:6<474::Aid-Rcm505>3.0.Co;2-1 |
0.735 |
|
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