Harold D. Kim, Ph.D. - Publications

Physics Georgia Institute of Technology, Atlanta, GA 
Biological physics, DNA packaging, Gene regulation

38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Jeong J, Kim HD. Determinants of cyclization-decyclization kinetics of short DNA with sticky ends. Nucleic Acids Research. PMID 32282905 DOI: 10.1093/nar/gkaa207  0.44
2019 Jeong J, Kim HD. Base-Pair Mismatch Can Destabilize Small DNA Loops through Cooperative Kinking. Physical Review Letters. 122: 218101. PMID 31283336 DOI: 10.1103/PhysRevLett.122.218101  0.44
2018 Broadwater DWB, Altman RB, Blanchard SC, Kim HD. ERASE: a novel surface reconditioning strategy for single-molecule experiments. Nucleic Acids Research. PMID 30462308 DOI: 10.1093/nar/gky1168  0.4
2016 Waters JT, Kim HD, Gumbart JC, Lu XJ, Harvey SC. DNA Scrunching in the Packaging of Viral Genomes. The Journal of Physical Chemistry. B. PMID 27214211 DOI: 10.1021/acs.jpcb.6b02149  0.92
2016 Waters JT, Kim HD. Force distribution in a semiflexible loop. Physical Review. E. 93: 043315. PMID 27176436 DOI: 10.1103/PhysRevE.93.043315  0.92
2016 Waters JT, Lu XJ, Galindo-Murillo R, Gumbart JC, Kim HD, Cheatham TE, Harvey SC. Transitions of Double-Stranded DNA Between the A- and B-Forms. The Journal of Physical Chemistry. B. PMID 27135262 DOI: 10.1021/acs.jpcb.6b02155  0.92
2016 Jeong J, Le TT, Kim HD. Single-molecule fluorescence studies on DNA looping. Methods (San Diego, Calif.). PMID 27064000 DOI: 10.1016/j.ymeth.2016.04.005  0.92
2015 Kim HD, Kim KH, Kim SJ, Kim TG. Fabrication of conducting-filament-embedded indium tin oxide electrodes: application to lateral-type gallium nitride light-emitting diodes. Optics Express. 23: 28775-83. PMID 26561146  0.32
2015 Ahn YB, Shin MS, Byun JS, Kim HD. The association of hypertension with periodontitis is highlighted in female adults; results from the Fourth Korea National Health and Nutrition Examination Survey (KNHANES IV). Journal of Clinical Periodontology. PMID 26461204 DOI: 10.1111/jcpe.12471  0.32
2015 Hong KW, Shin MS, Ahn YB, Lee HJ, Kim HD. Genomewide association study on chronic periodontitis in Korean population: results from the Yangpyeong health cohort. Journal of Clinical Periodontology. PMID 26212799 DOI: 10.1111/jcpe.12437  0.32
2015 Kang DO, Yu CW, Kim HD, Cho JY, Joo HJ, Choi RK, Park JS, Lee HJ, Kim JS, Park JH, Hong SJ, Lim DS. Triple antithrombotic therapy versus dual antiplatelet therapy in patients with atrial fibrillation undergoing drug-eluting stent implantation. Coronary Artery Disease. 26: 372-80. PMID 25768244 DOI: 10.1097/MCA.0000000000000242  0.32
2015 Shin HS, Han DH, Shin MS, Lee HJ, Kim MS, Kim HD. Korean version of child perceptions questionnaire and dental caries among Korean children. Plos One. 10: e0116011. PMID 25675410 DOI: 10.1371/journal.pone.0116011  0.32
2015 Waters JT, Kim HD. Calculation of a fluctuating entropic force by phase space sampling Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 92. DOI: 10.1103/PhysRevE.92.013308  0.92
2015 Chang YW, Fragkopoulos AA, Marquez SM, Kim HD, Angelini TE, Fernández-Nieves A. Biofilm formation in geometries with different surface curvature and oxygen availability New Journal of Physics. 17. DOI: 10.1088/1367-2630/17/3/033017  0.92
2014 Lee BR, Lee JH, Kim KH, Kim HD, Kim TG. Electrical and optical properties of poly(3,4-ethylenedioxythiophene) oxidized with poly(4-styrenesulfonate) and AuCl3-doped reduced graphene oxide/single-walled carbon nanotube films for ultraviolet light-emitting diodes. Journal of Nanoscience and Nanotechnology. 14: 9114-8. PMID 25971020  0.32
2014 Kim HK, Kim HD, Kim TG. High conductivity and ultraviolet band transparency of single-walled carbon nanotube films bridged with gold nanoparticles. Journal of Nanoscience and Nanotechnology. 14: 9092-6. PMID 25971016  0.32
2014 Kim HD, Yun MJ, Hong SM, Kim TG. Size-dependent resistive switching properties of the active region in nickel nitride-based crossbar array resistive random access memory. Journal of Nanoscience and Nanotechnology. 14: 9088-91. PMID 25971015 DOI: 10.1166/jnn.2014.10090  0.32
2014 Takeshita T, Matsuo K, Furuta M, Shibata Y, Fukami K, Shimazaki Y, Akifusa S, Han DH, Kim HD, Yokoyama T, Ninomiya T, Kiyohara Y, Yamashita Y. Distinct composition of the oral indigenous microbiota in South Korean and Japanese adults. Scientific Reports. 4: 6990. PMID 25384884 DOI: 10.1038/srep06990  0.32
2014 Le TT, Kim HD. Probing the elastic limit of DNA bending. Nucleic Acids Research. 42: 10786-94. PMID 25122748 DOI: 10.1093/nar/gku735  0.92
2014 Kim SJ, Kim HD, Kim KH, Shin HW, Han IK, Kim TG. Fabrication of wide-bandgap transparent electrodes by using conductive filaments: performance breakthrough in vertical-type GaN LED. Scientific Reports. 4: 5827. PMID 25059757 DOI: 10.1038/srep05827  0.32
2014 Lee TH, Eun LY, Choi JY, Kwon HE, Lee YM, Kim HD, Kang SW. Myocardial atrophy in children with mitochondrial disease and Duchenne muscular dystrophy. Korean Journal of Pediatrics. 57: 232-9. PMID 25045366 DOI: 10.3345/kjp.2014.57.5.232  0.32
2014 Le TT, Kim HD. Studying DNA looping by single-molecule FRET. Journal of Visualized Experiments : Jove. e51667. PMID 24998459 DOI: 10.3791/51667  0.92
2014 Kim HD, Sukhbaatar M, Shin M, Ahn YB, Yoo WS. Validation of periodontitis screening model using sociodemographic, systemic, and molecular information in a Korean population. Journal of Periodontology. 85: 1676-83. PMID 24965062 DOI: 10.1902/jop.2014.140061  0.32
2014 Kim HD, Yun MJ, Lee JH, Kim KH, Kim TG. Transparent multi-level resistive switching phenomena observed in ITO/RGO/ITO memory cells by the sol-gel dip-coating method. Scientific Reports. 4: 4614. PMID 24714566 DOI: 10.1038/srep04614  0.32
2014 Lee TJ, Parikh RY, Weitz JS, Kim HD. Suppression of expression between adjacent genes within heterologous modules in yeast. G3 (Bethesda, Md.). 4: 109-16. PMID 24281423 DOI: 10.1534/g3.113.007922  0.92
2013 Le TT, Kim HD. Measuring shape-dependent looping probability of DNA. Biophysical Journal. 104: 2068-76. PMID 23663850 DOI: 10.1016/j.bpj.2013.03.029  0.92
2009 Kim HD, Shay T, O'Shea EK, Regev A. Transcriptional regulatory circuits: predicting numbers from alphabets. Science (New York, N.Y.). 325: 429-32. PMID 19628860 DOI: 10.1126/science.1171347  0.92
2008 Kim HD, O'Shea EK. A quantitative model of transcription factor-activated gene expression. Nature Structural & Molecular Biology. 15: 1192-8. PMID 18849996 DOI: 10.1038/nsmb.1500  0.92
2007 Lee TH, Blanchard SC, Kim HD, Puglisi JD, Chu S. The role of fluctuations in tRNA selection by the ribosome. Proceedings of the National Academy of Sciences of the United States of America. 104: 13661-5. PMID 17699629 DOI: 10.1073/pnas.0705988104  0.72
2007 Kim HD, Puglisi JD, Chu S. Fluctuations of transfer RNAs between classical and hybrid states. Biophysical Journal. 93: 3575-82. PMID 17693476 DOI: 10.1529/biophysj.107.109884  0.72
2007 Uemura S, Dorywalska M, Lee TH, Kim HD, Puglisi JD, Chu S. Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome. Nature. 446: 454-7. PMID 17377584 DOI: 10.1038/nature05625  0.72
2005 Mohanty U, Spasic A, Kim HD, Chu S. Ion atmosphere of three-way junction nucleic acid. The Journal of Physical Chemistry. B. 109: 21369-74. PMID 16853772 DOI: 10.1021/jp050005o  0.72
2005 Dorywalska M, Blanchard SC, Gonzalez RL, Kim HD, Chu S, Puglisi JD. Site-specific labeling of the ribosome for single-molecule spectroscopy. Nucleic Acids Research. 33: 182-9. PMID 15647501 DOI: 10.1093/nar/gki151  0.72
2004 Blanchard SC, Gonzalez RL, Kim HD, Chu S, Puglisi JD. tRNA selection and kinetic proofreading in translation. Nature Structural & Molecular Biology. 11: 1008-14. PMID 15448679 DOI: 10.1038/nsmb831  0.72
2004 Blanchard SC, Kim HD, Gonzalez RL, Puglisi JD, Chu S. tRNA dynamics on the ribosome during translation. Proceedings of the National Academy of Sciences of the United States of America. 101: 12893-8. PMID 15317937 DOI: 10.1073/pnas.0403884101  0.72
2002 Kim HD, Nienhaus GU, Ha T, Orr JW, Williamson JR, Chu S. Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. Proceedings of the National Academy of Sciences of the United States of America. 99: 4284-9. PMID 11929999 DOI: 10.1073/pnas.032077799  0.72
2000 Zhuang X, Ha T, Kim HD, Centner T, Labeit S, Chu S. Fluorescence quenching: A tool for single-molecule protein-folding study. Proceedings of the National Academy of Sciences of the United States of America. 97: 14241-4. PMID 11121030 DOI: 10.1073/pnas.97.26.14241  0.72
1999 Ha T, Zhuang X, Kim HD, Orr JW, Williamson JR, Chu S. Ligand-induced conformational changes observed in single RNA molecules. Proceedings of the National Academy of Sciences of the United States of America. 96: 9077-82. PMID 10430898 DOI: 10.1073/pnas.96.16.9077  0.72
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