Barrett C. Foat - Publications

2007 Columbia University, New York, NY 

8 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2009 Foat BC, Stormo GD. Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs. Molecular Systems Biology. 5: 268. PMID 19401680 DOI: 10.1038/Msb.2009.24  1
2008 Foat BC, Tepper RG, Bussemaker HJ. TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors. Nucleic Acids Research. 36: D125-31. PMID 17947326 DOI: 10.1093/Nar/Gkm828  1
2007 Bussemaker HJ, Foat BC, Ward LD. Predictive modeling of genome-wide mRNA expression: from modules to molecules. Annual Review of Biophysics and Biomolecular Structure. 36: 329-47. PMID 17311525 DOI: 10.1146/Annurev.Biophys.36.040306.132725  1
2006 Foat BC, Morozov AV, Bussemaker HJ. Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. Bioinformatics (Oxford, England). 22: e141-9. PMID 16873464 DOI: 10.1093/Bioinformatics/Btl223  1
2005 Foat BC, Houshmandi SS, Olivas WM, Bussemaker HJ. Profiling condition-specific, genome-wide regulation of mRNA stability in yeast. Proceedings of the National Academy of Sciences of the United States of America. 102: 17675-80. PMID 16317069 DOI: 10.1073/Pnas.0503803102  1
2005 Boorsma A, Foat BC, Vis D, Klis F, Bussemaker HJ. T-profiler: scoring the activity of predefined groups of genes using gene expression data. Nucleic Acids Research. 33: W592-5. PMID 15980543 DOI: 10.1093/Nar/Gki484  1
2004 Gao F, Foat BC, Bussemaker HJ. Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data. Bmc Bioinformatics. 5: 31. PMID 15113405 DOI: 10.1186/1471-2105-5-31  1
2002 Zhang Y, Ma C, Delohery T, Nasipak B, Foat BC, Bounoutas A, Bussemaker HJ, Kim SK, Chalfie M. Identification of genes expressed in C. elegans touch receptor neurons. Nature. 418: 331-5. PMID 12124626 DOI: 10.1038/Nature00891  1
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