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N Pattabiraman - Publications

Affiliations: 
1990-1994 Lab for Structure of Matter U.S. Naval Research Laboratory, Washington, DC, United States 
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2005 Sivanesan D, Rajnarayanan RV, Doherty J, Pattabiraman N. In-silico Screening using Flexible Ligand Binding Pockets: A Molecular Dynamics-based Approach Journal of Computer-Aided Molecular Design. 19: 213-228. PMID 16163449 DOI: 10.1007/S10822-005-4788-9  0.348
2005 Akula N, Pattabiraman N. A systematic search method for the identification of tightly packed transmembrane parallel α-helices Journal of Biomolecular Structure & Dynamics. 22: 625-634. PMID 15842168 DOI: 10.1080/07391102.2005.10507030  0.397
2005 McGrath CF, Pattabiraman N, Kellogg GE, Lemcke T, Kunick C, Sausville EA, Zaharevitz DW, Gussio R. Homology model of the CDK1/cyclin B complex. Journal of Biomolecular Structure & Dynamics. 22: 493-502. PMID 15702922 DOI: 10.1080/07391102.2005.10531227  0.354
2003 Kuang D, Yao Y, Wang M, Pattabiraman N, Kotra LP, Hampson DR. Molecular similarities in the ligand binding pockets of an odorant receptor and the metabotropic glutamate receptors. The Journal of Biological Chemistry. 278: 42551-9. PMID 12912984 DOI: 10.1074/Jbc.M307120200  0.3
2003 Pattabiraman N. Role of residue packing in protein folding Trends in Analytical Chemistry. 22: 554-560. DOI: 10.1016/S0165-9936(03)00906-3  0.362
2002 Pattabiraman N. Analysis of ligand-macromolecule contacts: computational methods. Current Medicinal Chemistry. 9: 609-621. PMID 11945127 DOI: 10.2174/0929867024606957  0.326
2001 Garavelli JS, Hou Z, Pattabiraman N, Stephens RM. The RESID Database of protein structure modifications and the NRL-3D Sequence-Structure Database. Nucleic Acids Research. 29: 199-201. PMID 11125090 DOI: 10.1093/Nar/29.1.199  0.354
2000 Pattabiraman N, Matthews JH, Ward KB, Mantile-Selvaggi G, Miele L, Mukherjee AB. Crystal structure analysis of recombinant human uteroglobin and molecular modeling of ligand binding Annals of the New York Academy of Sciences. 923: 113-127. PMID 11193750 DOI: 10.1111/J.1749-6632.2000.Tb05523.X  0.665
1999 Balschi JA, Renugopalakrishan V, Collette TW, Dobbs JC, Carreira LA, Pattabiraman N, Langridge R, Sorensen KR, Huang SG, MacElroy RD. Molecular conformations of dermorphin: A unique non-nervous tissue μ- agonist Neuroscience Research Communications. 25: 13-24. DOI: 10.1002/(Sici)1520-6769(199907/08)25:1<13::Aid-Nrc2>3.0.Co;2-T  0.309
1998 Gussio R, Pattabiraman N, Kellogg GE, Zaharevitz DW. Use of 3D QSAR methodology for data mining the National Cancer Institute Repository of Small Molecules: application to HIV-1 reverse transcriptase inhibition. Methods (San Diego, Calif.). 14: 255-63. PMID 9571082 DOI: 10.1006/Meth.1998.0582  0.328
1996 Gussio R, Pattabiraman N, Zaharevitz DW, Kellogg GE, Topol IA, Rice WG, Schaeffer CA, Erickson JW, Burt SK. All-atom models for the non-nucleoside binding site of HIV-1 reverse transcriptase complexed with inhibitors: a 3D QSAR approach. Journal of Medicinal Chemistry. 39: 1645-50. PMID 8648604 DOI: 10.1021/Jm9508088  0.362
1995 Pattabiraman N, Ward KB, Fleming PJ. Occluded molecular surface: Analysis of protein packing Journal of Molecular Recognition. 8: 334-344. PMID 9052974 DOI: 10.1002/Jmr.300080603  0.651
1994 Le S, Pattabiraman N, Maizel JV. RNA tertiary structure of the HIV RRE domain II containing non-Watson-Crick base pairs GG and GA: molecular modeling studies Nucleic Acids Research. 22: 3966-3976. PMID 7937119 DOI: 10.1093/Nar/22.19.3966  0.308
1994 Matthews JH, Pattabiraman N, Ward KB, Mantile G, Miele L, Mukherjee AB. Crystallization and characterization of the recombinant human Clara cell 10-kDa protein Proteins: Structure, Function and Genetics. 20: 191-196. PMID 7846028 DOI: 10.1002/Prot.340200209  0.623
1993 Zhou N, Germann MW, Van De Sande JH, Pattabiraman N, Vogel HJ. Solution structure of the parallel-stranded hairpin d(T8〈〉C4A8) as determined by two-dimensional NMR Biochemistry. 32: 646-656. PMID 8380706 DOI: 10.1021/Bi00053A033  0.324
1991 Pattabiraman N, Ward KB. Crepe-ribbon representation for protein structures: comparison of phospholipases A2 Journal of Molecular Graphics. 9: 3-10. PMID 2018754 DOI: 10.1016/0263-7855(91)80026-V  0.659
1990 Feuerstein BG, Pattabiraman N, Marton LJ. Molecular mechanics of the interactions of spermine with DNA: DNA bending as a result of ligand binding Nucleic Acids Research. 18: 1271-1282. PMID 2320418 DOI: 10.1093/Nar/18.5.1271  0.316
1990 Ward KB, Pattabiraman N. Comparative anatomy of phospholipase A2 structures Advances in Experimental Medicine and Biology. 279: 23-36. PMID 2096696 DOI: 10.1007/978-1-4613-0651-1_2  0.623
1989 Feuerstein BG, Pattabiraman N, Marton LJ. Molecular dynamics of spermine-DNA 1nteractioas sequence specificity and DNA bending for a simple ligand Nucleic Acids Research. 17: 6883-6892. PMID 2780313 DOI: 10.1093/Nar/17.17.6883  0.346
1989 Renugopalakrishnan V, Pattabiraman N, Prabhakaran M, Strawich E, Glimcher MJ. Tooth enamel protein, amelogenin, has a probable β-spiral internal channel, Gln112-Leu138, within a single polypeptide chain: Preliminary molecular mechanics and dynamics studies Biopolymers. 28: 297-303. PMID 2720110 DOI: 10.1002/Bip.360280130  0.331
1989 Bansal M, Pattabiraman N. Molecular mechanics studies on poly(purine) · poly(pyrimidine) sequences in DNA: Polymorphism and local variability Biopolymers. 28: 531-548. PMID 2713451 DOI: 10.1002/Bip.360280202  0.341
1988 Devarajan S, Pattabiraman N, Shafer RH. Effect of discrete distribution of ions on B- and Z-DNA: a theoretical investigation. Biopolymers. 27: 187-200. PMID 3359002 DOI: 10.1002/Bip.360270203  0.308
1988 Bhatnagar RS, Pattabiraman N, Sorensen KR, Langridge R, MacElroy RD, Renugopalakrishnan V. Inter-chain proline:proline contacts contribute to the stability of the triple helical conformation. Journal of Biomolecular Structure & Dynamics. 6: 223-33. PMID 3271521 DOI: 10.1080/07391102.1988.10507709  0.334
1988 Gaber BP, Nagumo M, Light WR, Chandrasekhar I, Pattabiraman N. Molecular modeling of the phospholipid bilayer. Advances in Experimental Medicine and Biology. 238: 1-11. PMID 3250235 DOI: 10.1007/978-1-4684-7908-9_1  0.311
1988 Namboordiri K, Pattabiraman N, Lowrey A, Gaber B. Automated protein structure data bank similarity searches and their use in molecular modeling with MIDAS Journal of Molecular Graphics. 6: 211-212. DOI: 10.1016/S0263-7855(98)80014-3  0.351
1987 Pattabiraman N, Rao SN, Scott K, Langridge R, Kollman PA. Molecular mechanical studies on left- and right-handed B-DNA. Biopolymers. 26: 403-14. PMID 3567319 DOI: 10.1002/Bip.360260308  0.3
1987 Zhou N, Bianucci AM, Pattabiraman N, James TL. Solution structure of [d(GGTATACC)]2: Wrinkled D structure of the TATA moiety Biochemistry. 26: 7905-7913. PMID 3427113 DOI: 10.1021/Bi00398A055  0.349
1986 Suzuki EI, Pattabiraman N, Zon G, James TL. Solution structure of [d(A-T)5]2 via complete relaxation matrix analysis of two-dimensional nuclear overhauser effect spectra and molecular mechanics calculations: Evidence for a hydration tunnel Biochemistry®. 25: 6854-6865. PMID 3801398 DOI: 10.1021/Bi00370A019  0.334
1986 Feuerstein BG, Pattabiraman N, Marton LJ. Spermine-DNA interactions: A theoretical study Proceedings of the National Academy of Sciences of the United States of America. 83: 5948-5952. PMID 3461466 DOI: 10.1073/Pnas.83.16.5948  0.305
1986 Pattabiraman N, Sorensen KR, Langridge R, Bhatnagar RS, Renugopalakrishnan V, Rapaka RS. Molecular mechanics studies of dermorphin. Biochemical and Biophysical Research Communications. 140: 342-9. PMID 2877661 DOI: 10.1016/0006-291X(86)91096-X  0.309
1986 Haasnoot CA, Hilbers CW, van der Marel GA, van Boom JH, Singh UC, Pattabiraman N, Kollman PA. On loop folding in nucleic acid hairpin-type structures. Journal of Biomolecular Structure & Dynamics. 3: 843-57. PMID 2482747 DOI: 10.1080/07391102.1986.10508468  0.342
1980 Pattabiraman N, Rao SN, Sasisekharan V. Is 3'-nucleotide rigid? Nature. 284: 187-189. PMID 7360246 DOI: 10.1038/284187A0  0.376
1978 Sasisekharan V, Pattabiraman N. Structure of DNA predicted from stereochemistry of nucleoside derivatives. Nature. 275: 159-162. PMID 692688 DOI: 10.1038/275159A0  0.354
1978 Sasisekharan V, Pattabiraman N, Gupta G. Some implications of an alternative structure for DNA. Proceedings of the National Academy of Sciences of the United States of America. 75: 4092-4096. PMID 279899 DOI: 10.1073/Pnas.75.9.4092  0.325
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