Molly Hammell, Ph.D. - Publications

Affiliations: 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
Area:
gene regulatory networks, bioinformatics
Website:
http://www.cshl.edu/Faculty/molly-hammell

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Stein CB, Genzor P, Mitra S, Elchert AR, Ipsaro JJ, Benner L, Sobti S, Su Y, Hammell M, Joshua-Tor L, Haase AD. Decoding the 5' nucleotide bias of PIWI-interacting RNAs. Nature Communications. 10: 828. PMID 30783109 DOI: 10.1038/S41467-019-08803-Z  0.328
2018 O'Neill K, Liao WW, Patel A, Hammell MG. TEsmall Identifies Small RNAs Associated With Targeted Inhibitor Resistance in Melanoma. Frontiers in Genetics. 9: 461. PMID 30349559 DOI: 10.3389/fgene.2018.00461  0.378
2018 Jin Y, Hammell M. Analysis of RNA-Seq Data Using TEtranscripts. Methods in Molecular Biology (Clifton, N.J.). 1751: 153-167. PMID 29508296 DOI: 10.1007/978-1-4939-7710-9_11  0.32
2017 Krug L, Chatterjee N, Borges-Monroy R, Hearn S, Liao WW, Morrill K, Prazak L, Rozhkov N, Theodorou D, Hammell M, Dubnau J. Retrotransposon activation contributes to neurodegeneration in a Drosophila TDP-43 model of ALS. Plos Genetics. 13: e1006635. PMID 28301478 DOI: 10.1371/Journal.Pgen.1006635  0.309
2017 Chio IIC, Jafarnejad SM, Ponz-Sarvise M, Park Y, Rivera K, Palm W, Ohlund D, Hammell M, Crawford H, Schmidt E, Thompson C, Pappin D, Sonenberg N, Tuveson D. Abstract PR03: NRF2 promotes tumor maintenance by modulating mRNA translation in pancreatic cancer Cancer Research. 77. DOI: 10.1158/1538-7445.Transcontrol16-Pr03  0.345
2016 Chio II, Jafarnejad SM, Ponz-Sarvise M, Park Y, Rivera K, Palm W, Wilson J, Sangar V, Hao Y, Öhlund D, Wright K, Filippini D, Lee EJ, Da Silva B, Schoepfer C, ... ... Hammell M, et al. NRF2 Promotes Tumor Maintenance by Modulating mRNA Translation in Pancreatic Cancer. Cell. PMID 27477511 DOI: 10.1016/J.Cell.2016.06.056  0.304
2016 Chio IIC, Jafarnejad SM, Ponz-Sarvise M, Rivera K, Öhlund D, Sangar V, Wright K, Fillippi D, Hao Y, Wilkinson JE, Tiriac H, Hammell M, Schmidt E, Park Y, Pappin D, et al. Abstract PR04: Nrf2 promotes mRNA translation in pancreatic cancer Cancer Research. 76. DOI: 10.1158/1538-7445.Panca16-Pr04  0.341
2015 Tajima K, Yae T, Javaid S, Tam O, Comaills V, Morris R, Wittner BS, Liu M, Engstrom A, Takahashi F, Black JC, Ramaswamy S, Shioda T, Hammell M, Haber DA, et al. SETD1A modulates cell cycle progression through a miRNA network that regulates p53 target genes. Nature Communications. 6: 8257. PMID 26394836 DOI: 10.1038/Ncomms9257  0.511
2015 Petsch K, Manzotti PS, Tam OH, Meeley R, Hammell M, Consonni G, Timmermans MC. Novel DICER-LIKE1 siRNAs Bypass the Requirement for DICER-LIKE4 in Maize Development. The Plant Cell. 27: 2163-77. PMID 26209554 DOI: 10.1105/Tpc.15.00194  0.392
2015 Wasik KA, Tam OH, Knott SR, Falciatori I, Hammell M, Vagin VV, Hannon GJ. RNF17 blocks promiscuous activity of PIWI proteins in mouse testes. Genes & Development. 29: 1403-15. PMID 26115953 DOI: 10.1101/Gad.265215.115  0.336
2015 Burke SL, Hammell M, Ambros V. Robust Distal Tip Cell Pathfinding in the Face of Temperature Stress Is Ensured by Two Conserved microRNAs in Caenorhabditis elegans. Genetics. PMID 26078280 DOI: 10.1534/Genetics.115.179184  0.559
2015 Goh WS, Falciatori I, Tam OH, Burgess R, Meikar O, Kotaja N, Hammell M, Hannon GJ. piRNA-directed cleavage of meiotic transcripts regulates spermatogenesis. Genes & Development. 29: 1032-44. PMID 25995188 DOI: 10.1101/Gad.260455.115  0.435
2014 Dotto MC, Petsch KA, Aukerman MJ, Beatty M, Hammell M, Timmermans MC. Genome-wide analysis of leafbladeless1-regulated and phased small RNAs underscores the importance of the TAS3 ta-siRNA pathway to maize development. Plos Genetics. 10: e1004826. PMID 25503246 DOI: 10.1371/Journal.Pgen.1004826  0.366
2014 Meikar O, Vagin VV, Chalmel F, Sõstar K, Lardenois A, Hammell M, Jin Y, Da Ros M, Wasik KA, Toppari J, Hannon GJ, Kotaja N. An atlas of chromatoid body components. Rna (New York, N.Y.). 20: 483-95. PMID 24554440 DOI: 10.1261/Rna.043729.113  0.349
2013 Rozhkov NV, Hammell M, Hannon GJ. Multiple roles for Piwi in silencing Drosophila transposons. Genes & Development. 27: 400-12. PMID 23392609 DOI: 10.1101/Gad.209767.112  0.37
2013 Paul S, Kuo A, Schalch T, Vogel H, Joshua-Tor L, McCombie WR, Gozani O, Hammell M, Mills AA. Chd5 requires PHD-mediated histone 3 binding for tumor suppression. Cell Reports. 3: 92-102. PMID 23318260 DOI: 10.1016/J.Celrep.2012.12.009  0.312
2012 Li W, Jin Y, Prazak L, Hammell M, Dubnau J. Transposable elements in TDP-43-mediated neurodegenerative disorders. Plos One. 7: e44099. PMID 22957047 DOI: 10.1371/Journal.Pone.0044099  0.343
2011 Karp X, Hammell M, Ow MC, Ambros V. Effect of life history on microRNA expression during C. elegans development. Rna (New York, N.Y.). 17: 639-51. PMID 21343388 DOI: 10.1261/Rna.2310111  0.569
2010 Hammell M. Computational methods to identify miRNA targets. Seminars in Cell & Developmental Biology. 21: 738-44. PMID 20079866 DOI: 10.1016/J.Semcdb.2010.01.004  0.537
2009 Hong X, Hammell M, Ambros V, Cohen SM. Immunopurification of Ago1 miRNPs selects for a distinct class of microRNA targets. Proceedings of the National Academy of Sciences of the United States of America. 106: 15085-90. PMID 19706460 DOI: 10.1073/Pnas.0908149106  0.645
2009 Zhang L, Hammell M, Kudlow BA, Ambros V, Han M. Systematic analysis of dynamic miRNA-target interactions during C. elegans development. Development (Cambridge, England). 136: 3043-55. PMID 19675127 DOI: 10.1242/Dev.039008  0.643
2008 Hammell M, Long D, Zhang L, Lee A, Carmack CS, Han M, Ding Y, Ambros V. mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts. Nature Methods. 5: 813-9. PMID 19160516 DOI: 10.1038/Nmeth.1247  0.645
2008 Martinez NJ, Ow MC, Barrasa MI, Hammell M, Sequerra R, Doucette-Stamm L, Roth FP, Ambros VR, Walhout AJ. A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity. Genes & Development. 22: 2535-49. PMID 18794350 DOI: 10.1101/Gad.1678608  0.638
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