Kim Sneppen - Publications

Affiliations: 
Physics Niels Bohr Institute 

146 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kirkegaard JB, Mathiesen J, Sneppen K. Superspreading of airborne pathogens in a heterogeneous world. Scientific Reports. 11: 11191. PMID 34045593 DOI: 10.1038/s41598-021-90666-w  0.4
2021 Nickels JF, Edwards AK, Charlton SJ, Mortensen AM, Hougaard SCL, Trusina A, Sneppen K, Thon G. Establishment of heterochromatin in domain-size-dependent bursts. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33827924 DOI: 10.1073/pnas.2022887118  0.4
2021 Eilersen A, Sneppen K. SARS-CoV-2 superspreading in cities vs the countryside. Apmis : Acta Pathologica, Microbiologica, Et Immunologica Scandinavica. PMID 33622024 DOI: 10.1111/apm.13120  0.84
2020 Eilersen A, Sneppen K. Cost-benefit of limited isolation and testing in COVID-19 mitigation. Scientific Reports. 10: 18543. PMID 33122753 DOI: 10.1038/s41598-020-75640-2  0.84
2020 Eriksen RS, Mitarai N, Sneppen K. On Phage Adsorption to Bacterial Chains. Biophysical Journal. 119: 1896-1904. PMID 33069271 DOI: 10.1016/j.bpj.2020.09.027  0.32
2020 Eilersen A, Sneppen K. The uneasy coexistence of predators and pathogens. The European Physical Journal. E, Soft Matter. 43: 42. PMID 32617692 DOI: 10.1140/Epje/I2020-11966-7  0.84
2020 Kirkegaard JB, Sneppen K. Optimal Transport Flows for Distributed Production Networks. Physical Review Letters. 124: 208101. PMID 32501061 DOI: 10.1103/Physrevlett.124.208101  0.4
2020 Eilersen A, Jensen MH, Sneppen K. Chaos in disease outbreaks among prey. Scientific Reports. 10: 3907. PMID 32127626 DOI: 10.1038/S41598-020-60945-Z  0.96
2020 Eriksen RS, Mitarai N, Sneppen K. Sustainability of spatially distributed bacteria-phage systems. Scientific Reports. 10: 3154. PMID 32081858 DOI: 10.1038/S41598-020-59635-7  0.32
2020 Nielsen BF, Nissen SB, Sneppen K, Mathiesen J, Trusina A. Model to Link Cell Shape and Polarity with Organogenesis. Iscience. 23: 100830. PMID 31986479 DOI: 10.1016/J.Isci.2020.100830  0.4
2019 Kirkegaard JB, Nielsen BF, Trusina A, Sneppen K. Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks. Journal of the Royal Society, Interface. 16: 20190517. PMID 31640503 DOI: 10.1098/Rsif.2019.0517  0.4
2019 Eilersen A, Sneppen K. Applying allometric scaling to predator-prey systems. Physical Review. E. 99: 022405. PMID 30934339 DOI: 10.1103/Physreve.99.022405  0.84
2019 Pedersen S, Terkelsen TB, Eriksen M, Hauge MK, Lund CC, Sneppen K, Mitarai N. Fast Translation within the First 45 Codons Decreases mRNA Stability and Increases Premature Transcription Termination in E. coli. Journal of Molecular Biology. PMID 30690030 DOI: 10.1016/J.Jmb.2019.01.026  0.32
2018 Nissen SB, Rønhild S, Trusina A, Sneppen K. Theoretical tool bridging cell polarities with development of robust morphologies. Elife. 7. PMID 30477635 DOI: 10.7554/Elife.38407  0.4
2018 Haerter JO, Mitarai N, Sneppen K. Theory of invasion extinction dynamics in minimal food webs. Physical Review. E. 97: 022404. PMID 29548095 DOI: 10.1103/Physreve.97.022404  0.32
2018 Nissen SB, Rønhild S, Trusina A, Sneppen K. Author response: Theoretical tool bridging cell polarities with development of robust morphologies Elife. DOI: 10.7554/Elife.38407.033  0.4
2018 Sneppen K, Bornholdt S. Globalization in a nutshell Physical Review E. 98: 42314. DOI: 10.1103/Physreve.98.042314  0.4
2017 Haerter JO, Mitarai N, Sneppen K. Existence and construction of large stable food webs. Physical Review. E. 96: 032406. PMID 29346992 DOI: 10.1103/Physreve.96.032406  0.32
2017 Eriksen RS, Svenningsen SL, Sneppen K, Mitarai N. A growing microcolony can survive and support persistent propagation of virulent phages. Proceedings of the National Academy of Sciences of the United States of America. PMID 29259110 DOI: 10.1073/Pnas.1708954115  0.32
2017 Nissen SB, Perera M, Gonzalez JM, Morgani SM, Jensen MH, Sneppen K, Brickman JM, Trusina A. Four simple rules that are sufficient to generate the mammalian blastocyst. Plos Biology. 15: e2000737. PMID 28700688 DOI: 10.1371/Journal.Pbio.2000737  0.96
2017 Eriksen M, Sneppen K, Pedersen S, Mitarai N. Occlusion of the Ribosome Binding Site Connects the Translational Initiation Frequency, mRNA Stability and Premature Transcription Termination. Frontiers in Microbiology. 8: 362. PMID 28382022 DOI: 10.3389/Fmicb.2017.00362  0.32
2016 Mitarai N, Gunnarson I, Pedersen BN, Rosiek CA, Sneppen K. Three is much more than two in coarsening dynamics of cyclic competitions. Physical Review. E. 93: 042408. PMID 27176330 DOI: 10.1103/Physreve.93.042408  0.32
2016 Obersriebnig MJ, Pallesen EM, Sneppen K, Trusina A, Thon G. Nucleation and spreading of a heterochromatic domain in fission yeast. Nature Communications. 7: 11518. PMID 27167753 DOI: 10.1038/Ncomms11518  0.4
2016 Tian C, Roghanian M, Jørgensen MG, Sneppen K, Sørensen MA, Gerdes K, Mitarai N. Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Encoded mRNases. Journal of Bacteriology. PMID 27137501 DOI: 10.1128/Jb.00062-16  0.32
2016 Cao B, Christophersen L, Kolpen M, Jensen PØ, Sneppen K, Høiby N, Moser C, Sams T. Diffusion Retardation by Binding of Tobramycin in an Alginate Biofilm Model. Plos One. 11: e0153616. PMID 27100887 DOI: 10.1371/Journal.Pone.0153616  0.96
2016 Mitarai N, Brown S, Sneppen K. Population Dynamics of Phage and Bacteria in Spatially Structured Habitats Using Phage λ and Escherichia coli. Journal of Bacteriology. 198: 1783-93. PMID 27068593 DOI: 10.1128/Jb.00965-15  0.32
2016 Lövkvist C, Dodd IB, Sneppen K, Haerter JO. DNA methylation in human epigenomes depends on local topology of CpG sites. Nucleic Acids Research. PMID 26932361 DOI: 10.1093/Nar/Gkw124  0.96
2016 Sormani G, Haerter JO, Lövkvist C, Sneppen K. Stabilization of epigenetic states of CpG islands by local cooperation. Molecular Biosystems. PMID 26923344 DOI: 10.1039/C6Mb00044D  0.96
2016 Haerter JO, Mitarai N, Sneppen K. Food Web Assembly Rules for Generalized Lotka-Volterra Equations. Plos Computational Biology. 12: e1004727. PMID 26828363 DOI: 10.1371/Journal.Pcbi.1004727  0.96
2015 Mitarai N, Semsey S, Sneppen K. Dynamic competition between transcription initiation and repression: Role of nonequilibrium steps in cell-to-cell heterogeneity. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 022710. PMID 26382435 DOI: 10.1103/Physreve.92.022710  0.32
2015 Sneppen K, Semsey S, Seshasayee AS, Krishna S. Restriction modification systems as engines of diversity. Frontiers in Microbiology. 6: 528. PMID 26082758 DOI: 10.3389/Fmicb.2015.00528  0.36
2014 Haerter JO, Mitarai N, Sneppen K. Phage and bacteria support mutual diversity in a narrowing staircase of coexistence. The Isme Journal. 8: 2317-26. PMID 24858781 DOI: 10.1038/Ismej.2014.80  0.96
2014 Mitarai N, Heinsalu E, Sneppen K. Speciation, diversification, and coexistence of sessile species that compete for space. Plos One. 9: e96665. PMID 24819515 DOI: 10.1371/Journal.Pone.0096665  0.32
2014 Haerter JO, Lövkvist C, Dodd IB, Sneppen K. Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states. Nucleic Acids Research. 42: 2235-44. PMID 24288373 DOI: 10.1093/Nar/Gkt1235  0.96
2013 Cataudella I, Sneppen K, Gerdes K, Mitarai N. Conditional cooperativity of toxin - antitoxin regulation can mediate bistability between growth and dormancy. Plos Computational Biology. 9: e1003174. PMID 24009488 DOI: 10.1371/Journal.Pcbi.1003174  0.32
2013 Juul J, Sneppen K, Mathiesen J. Labyrinthine clustering in a spatial rock-paper-scissors ecosystem. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 042702. PMID 23679446 DOI: 10.1103/Physreve.87.042702  0.32
2013 Pigolotti S, Lizana L, Otzen D, Sneppen K. Quality control system response to stochastic growth of amyloid fibrils. Febs Letters. 587: 1405-10. PMID 23524241 DOI: 10.1016/J.Febslet.2013.03.018  0.4
2012 Mitarai N, Mathiesen J, Sneppen K. Emergence of diversity in a model ecosystem. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 011929. PMID 23005473 DOI: 10.1103/Physreve.86.011929  0.32
2012 Sneppen K, Mitarai N. Multistability with a metastable mixed state. Physical Review Letters. 109: 100602. PMID 23005273 DOI: 10.1103/Physrevlett.109.100602  0.32
2012 Juul J, Sneppen K, Mathiesen J. Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 061924. PMID 23005144 DOI: 10.1103/Physreve.85.061924  0.32
2012 Dybiec B, Mitarai N, Sneppen K. Information spreading and development of cultural centers. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 056116. PMID 23004830 DOI: 10.1103/Physreve.85.056116  0.32
2012 Haerter JO, Sneppen K. Spatial structure and Lamarckian adaptation explain extreme genetic diversity at CRISPR locus. Mbio. 3: e00126-12. PMID 22807565 DOI: 10.1128/Mbio.00126-12  0.96
2012 Heilmann S, Sneppen K, Krishna S. Coexistence of phage and bacteria on the boundary of self-organized refuges. Proceedings of the National Academy of Sciences of the United States of America. 109: 12828-33. PMID 22807479 DOI: 10.1073/Pnas.1200771109  0.36
2012 Cataudella I, Trusina A, Sneppen K, Gerdes K, Mitarai N. Conditional cooperativity in toxin-antitoxin regulation prevents random toxin activation and promotes fast translational recovery. Nucleic Acids Research. 40: 6424-34. PMID 22495927 DOI: 10.1093/Nar/Gks297  0.4
2012 Bernhardsson S, Mitarai N, Sneppen K. Protein localization with flexible DNA or RNA. Plos One. 7: e29218. PMID 22347995 DOI: 10.1371/Journal.Pone.0029218  0.96
2012 Inoue M, Trusina A, Mitarai N, Sneppen K. 2C1424 Conflicted dissociation constant in two reaction mechanisms for heat shock response(Mathematical Biology,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 52. DOI: 10.2142/Biophys.52.S42_3  0.4
2011 Mathiesen J, Mitarai N, Sneppen K, Trusina A. Ecosystems with mutually exclusive interactions self-organize to a state of high diversity. Physical Review Letters. 107: 188101. PMID 22107676 DOI: 10.1103/Physrevlett.107.188101  0.4
2011 Haerter JO, Trusina A, Sneppen K. Targeted bacterial immunity buffers phage diversity. Journal of Virology. 85: 10554-60. PMID 21813617 DOI: 10.1128/Jvi.05222-11  0.96
2011 Lizana L, Mitarai N, Sneppen K, Nakanishi H. Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 066116. PMID 21797450 DOI: 10.1103/Physreve.83.066116  0.4
2011 Bendtsen KM, Erdossy J, Csiszovszki Z, Svenningsen SL, Sneppen K, Krishna S, Semsey S. Direct and indirect effects in the regulation of overlapping promoters. Nucleic Acids Research. 39: 6879-85. PMID 21609952 DOI: 10.1093/Nar/Gkr390  0.96
2011 Pedersen M, Nissen S, Mitarai N, Svenningsen SL, Sneppen K, Pedersen S. The functional half-life of an mRNA depends on the ribosome spacing in an early coding region Journal of Molecular Biology. 407: 35-44. PMID 21255584 DOI: 10.1016/J.Jmb.2011.01.025  0.96
2011 Bornholdt S, Jensen MH, Sneppen K. Emergence and decline of scientific paradigms Physical Review Letters. 106. DOI: 10.1103/PhysRevLett.106.058701  0.96
2010 Avlund M, Krishna S, Semsey S, Dodd IB, Sneppen K. Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise. Plos One. 5: e15037. PMID 21188148 DOI: 10.1371/Journal.Pone.0015037  0.36
2010 Sneppen K, Trusina A, Jensen MH, Bornholdt S. A minimal model for multiple epidemics and immunity spreading. Plos One. 5: e13326. PMID 20976185 DOI: 10.1371/Journal.Pone.0013326  0.96
2010 Sneppen K, Pedersen S, Krishna S, Dodd I, Semsey S. Economy of operon formation: cotranscription minimizes shortfall in protein complexes. Mbio. 1. PMID 20877578 DOI: 10.1128/Mbio.00177-10  0.36
2010 Mathiesen J, Jamtveit B, Sneppen K. Organizational structure and communication networks in a university environment. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 016104. PMID 20866686 DOI: 10.1103/Physreve.82.016104  0.32
2010 Micheelsen MA, Mitarai N, Sneppen K, Dodd IB. Theory for the stability and regulation of epigenetic landscapes. Physical Biology. 7: 026010. PMID 20526030 DOI: 10.1088/1478-3975/7/2/026010  0.32
2010 Lizana L, Rosvall M, Sneppen K. Time walkers and spatial dynamics of aging information. Physical Review Letters. 104: 040603. PMID 20366697 DOI: 10.1103/Physrevlett.104.040603  0.4
2010 Sneppen K, Krishna S, Semsey S. Simplified models of biological networks. Annual Review of Biophysics. 39: 43-59. PMID 20192769 DOI: 10.1146/Annurev.Biophys.093008.131241  0.36
2010 Heilmann S, Sneppen K, Krishna S. Sustainability of virulence in a phage-bacterial ecosystem. Journal of Virology. 84: 3016-22. PMID 20071588 DOI: 10.1128/Jvi.02326-09  0.36
2010 Lizana L, Rosvall M, Sneppen K. Time walkers and spatial dynamics of aging information Physical Review Letters. 104. DOI: 10.1103/PhysRevLett.104.040603  0.96
2009 Avlund M, Dodd IB, Sneppen K, Krishna S. Minimal gene regulatory circuits that can count like bacteriophage lambda. Journal of Molecular Biology. 394: 681-93. PMID 19796646 DOI: 10.1016/J.Jmb.2009.09.053  0.36
2009 Avlund M, Dodd IB, Semsey S, Sneppen K, Krishna S. Why do phage play dice? Journal of Virology. 83: 11416-20. PMID 19740995 DOI: 10.1128/Jvi.01057-09  0.36
2009 Semsey S, Benjamin JA, Mitarai N, Krishna S, Csiszovszki Z, Sneppen K, Massé E. Dynamics of the recovery from sRNA-mediated gene silencing. Cell Cycle (Georgetown, Tex.). 8: 2863-4. PMID 19729996 DOI: 10.4161/Cc.8.18.9400  0.36
2009 Krishna S, Orosz L, Sneppen K, Adhya S, Semsey S. Relation of intracellular signal levels and promoter activities in the gal regulon of Escherichia coli. Journal of Molecular Biology. 391: 671-8. PMID 19559028 DOI: 10.1016/J.Jmb.2009.06.043  0.36
2009 Mitarai N, Benjamin JA, Krishna S, Semsey S, Csiszovszki Z, Massé E, Sneppen K. Dynamic features of gene expression control by small regulatory RNAs. Proceedings of the National Academy of Sciences of the United States of America. 106: 10655-9. PMID 19541626 DOI: 10.1073/Pnas.0901466106  0.36
2009 Maslov S, Krishna S, Pang TY, Sneppen K. Toolbox model of evolution of prokaryotic metabolic networks and their regulation. Proceedings of the National Academy of Sciences of the United States of America. 106: 9743-8. PMID 19482938 DOI: 10.1073/Pnas.0903206106  0.36
2009 Semsey S, Krishna S, Erdossy J, Horváth P, Orosz L, Sneppen K, Adhya S. Dominant negative autoregulation limits steady-state repression levels in gene networks. Journal of Bacteriology. 191: 4487-91. PMID 19429616 DOI: 10.1128/Jb.00056-09  0.36
2009 Sneppen K, Lizana L, Jensen MH, Pigolotti S, Otzen D. Modeling proteasome dynamics in Parkinson's disease. Physical Biology. 6: 036005. PMID 19411740 DOI: 10.1088/1478-3975/6/3/036005  0.96
2009 Werner M, Semsey S, Sneppen K, Krishna S. Dynamics of uptake and metabolism of small molecules in cellular response systems. Plos One. 4: e4923. PMID 19290058 DOI: 10.1371/Journal.Pone.0004923  0.36
2009 Bornholdt S, Sneppen K, Westphal H. Longevity of orders is related to the longevity of their constituent genera rather than genus richness. Theory in Biosciences = Theorie in Den Biowissenschaften. 128: 75-83. PMID 19101746 DOI: 10.1007/S12064-008-0053-9  0.4
2009 Rosvall M, Sneppen K. Reinforced communication and social navigation generate groups in model networks Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 79. DOI: 10.1103/PhysRevE.79.026111  0.96
2008 Nakanishi H, Mitarai N, Sneppen K. Dynamical analysis on gene activity in the presence of repressors and an interfering promoter. Biophysical Journal. 95: 4228-40. PMID 18658208 DOI: 10.1529/Biophysj.108.132894  0.32
2008 Mitarai N, Sneppen K, Pedersen S. Ribosome collisions and translation efficiency: optimization by codon usage and mRNA destabilization. Journal of Molecular Biology. 382: 236-45. PMID 18619977 DOI: 10.1016/J.Jmb.2008.06.068  0.32
2008 Mitarai N, Dodd IB, Crooks MT, Sneppen K. The generation of promoter-mediated transcriptional noise in bacteria. Plos Computational Biology. 4: e1000109. PMID 18617999 DOI: 10.1371/Journal.Pcbi.1000109  0.32
2008 Axelsen JB, Bernhardsson S, Sneppen K. One hub-one process: a tool based view on regulatory network topology. Bmc Systems Biology. 2: 25. PMID 18318890 DOI: 10.1186/1752-0509-2-25  0.96
2008 Mitarai N, Sneppen K, Pedersen S. 1P-124 Ribosome collisions in translation process and translation efficiency(The 46th Annual Meeting of the Biophysical Society of Japan) Seibutsu Butsuri. 48. DOI: 10.2142/Biophys.48.S40_4  0.32
2008 Nakanishi H, Mitarai N, Sneppen K. 1P-123 Dynamical Analysis on Gene Activity in the Presence of Repressors and an Interfering Promoter(The 46th Annual Meeting of the Biophysical Society of Japan) Biophysics. 48. DOI: 10.2142/Biophys.48.S40_3  0.32
2008 Jensen MH, Sneppen K, Angheluta L. Kolmogorov scaling from random force fields Epl. 84. DOI: 10.1209/0295-5075/84/10011  0.96
2007 Krishna S, Semsey S, Sneppen K. Combinatorics of feedback in cellular uptake and metabolism of small molecules. Proceedings of the National Academy of Sciences of the United States of America. 104: 20815-9. PMID 18093927 DOI: 10.1073/Pnas.0706231105  0.36
2007 Mitarai N, Andersson AM, Krishna S, Semsey S, Sneppen K. Efficient degradation and expression prioritization with small RNAs. Physical Biology. 4: 164-71. PMID 17928655 DOI: 10.1088/1478-3975/4/3/003  0.36
2007 Tiana G, Krishna S, Pigolotti S, Jensen MH, Sneppen K. Oscillations and temporal signalling in cells. Physical Biology. 4: R1-17. PMID 17664651 DOI: 10.1088/1478-3975/4/2/R01  0.96
2007 Semsey S, Krishna S, Sneppen K, Adhya S. Signal integration in the galactose network of Escherichia coli. Molecular Microbiology. 65: 465-76. PMID 17630975 DOI: 10.1111/J.1365-2958.2007.05798.X  0.36
2007 Dodd IB, Shearwin KE, Sneppen K. Modelling Transcriptional Interference and DNA Looping in Gene Regulation Journal of Molecular Biology. 369: 1200-1213. PMID 17498740 DOI: 10.1016/J.Jmb.2007.04.041  0.96
2007 Krishna S, Maslov S, Sneppen K. UV-induced mutagenesis in Escherichia coli SOS response: a quantitative model. Plos Computational Biology. 3: e41. PMID 17367202 DOI: 10.1371/Journal.Pcbi.0030041  0.36
2007 Rosvall M, Sneppen K. Networks and our limited information horizon International Journal of Bifurcation and Chaos. 17: 2509-2515. DOI: 10.1142/S0218127407018580  0.96
2006 Rosvall M, Dodd IB, Krishna S, Sneppen K. Network models of phage-bacteria coevolution. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 066105. PMID 17280119 DOI: 10.1103/Physreve.74.066105  0.36
2006 Axelsen JB, Bernhardsson S, Rosvall M, Sneppen K, Trusina A. Degree landscapes in scale-free networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 036119. PMID 17025720 DOI: 10.1103/Physreve.74.036119  0.4
2006 Semsey S, Andersson AM, Krishna S, Jensen MH, Massé E, Sneppen K. Genetic regulation of fluxes: iron homeostasis of Escherichia coli. Nucleic Acids Research. 34: 4960-7. PMID 16982641 DOI: 10.1093/Nar/Gkl627  0.96
2006 Krishna S, Jensen MH, Sneppen K. Minimal model of spiky oscillations in NF-kappaB signaling. Proceedings of the National Academy of Sciences of the United States of America. 103: 10840-5. PMID 16829571 DOI: 10.1073/Pnas.0604085103  0.96
2006 Krishna S, Andersson AM, Semsey S, Sneppen K. Structure and function of negative feedback loops at the interface of genetic and metabolic networks. Nucleic Acids Research. 34: 2455-62. PMID 16684993 DOI: 10.1093/Nar/Gkl140  0.36
2006 Rosvall M, Sneppen K. Self-assembly of information in networks Europhysics Letters. 74: 1109-1115. DOI: 10.1209/Epl/I2006-10064-2  0.96
2006 Sneppen K, Rosvall M. A communication perspective on network topologies Progress of Theoretical Physics Supplement. 103-118. DOI: 10.1143/Ptps.165.103  0.96
2006 Rosvall M, Dodd IB, Krishna S, Sneppen K. Network models of phage-bacteria coevolution Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 74. DOI: 10.1103/PhysRevE.74.066105  0.96
2006 Axelsen JB, Bernhardsson S, Rosvall M, Sneppen K, Trusina A. Degree landscapes in scale-free networks Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 74. DOI: 10.1103/PhysRevE.74.036119  0.96
2006 Rosvall M, Sneppen K. Modeling self-organization of communication and topology in social networks Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 74. DOI: 10.1103/PhysRevE.74.016108  0.96
2005 Trusina A, Sneppen K, Dodd IB, Shearwin KE, Egan JB. Functional alignment of regulatory networks: a study of temperate phages. Plos Computational Biology. 1: e74. PMID 16477325 DOI: 10.1371/Journal.Pcbi.0010074  0.96
2005 Trusina A, Rosvall M, Sneppen K. Communication boundaries in networks Physical Review Letters. 94. PMID 16090509 DOI: 10.1103/Physrevlett.94.238701  0.96
2005 Rosvall M, Trusina A, Minnhagen P, Sneppen K. Networks and cities: an information perspective. Physical Review Letters. 94: 028701. PMID 15698238 DOI: 10.1103/Physrevlett.94.028701  0.96
2005 Sneppen K, Dodd IB, Shearwin KE, Palmer AC, Schubert RA, Callen BP, Egan JB. A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli Journal of Molecular Biology. 346: 399-409. PMID 15670592 DOI: 10.1016/J.Jmb.2004.11.075  0.96
2005 Trusma A, Sneppen K, Dodd IB, Shearwin KE, Barry Egan J. Functional Alignment of Regulatory Networks: A Study of Temperate Phages Plos Computational Biology. 1: 0599-0603. DOI: 10.1371/journal.pcbi.0010074  0.96
2005 Sneppen K, Trusina A, Rosvall M. Hide-and-seek on complex networks Europhysics Letters. 69: 853-859. DOI: 10.1209/Epl/I2004-10422-0  0.96
2005 Kim BJ, Trusina A, Minnhagen P, Sneppen K. Self organized scale-free networks from merging and regeneration European Physical Journal B. 43: 369-372. DOI: 10.1140/Epjb/E2005-00065-Y  0.4
2005 Rosvall M, Grönlund A, Minnhagen P, Sneppen K. Searchability of networks Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 72. DOI: 10.1103/PhysRevE.72.046117  0.96
2005 Rosvall M, Minnhagen P, Sneppen K. Navigating networks with limited information Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 71. DOI: 10.1103/PhysRevE.71.066111  0.96
2005 Sneppen K, Trusina A, Rosvall M. Measuring information networks Pramana - Journal of Physics. 64: 1121-1125. DOI: 10.1007/Bf02704173  0.96
2004 Eriksen KA, Hörnquist M, Sneppen K. Visualization of large-scale correlations in gene expressions. Functional & Integrative Genomics. 4: 241-5. PMID 15338442 DOI: 10.1007/S10142-004-0114-1  0.96
2004 Maslov S, Sneppen K, Eriksen KA, Yan KK. Upstream plasticity and downstream robustness in evolution of molecular networks. Bmc Evolutionary Biology. 4: 9. PMID 15070432 DOI: 10.1186/1471-2148-4-9  0.96
2004 Fygenson DK, Needleman DJ, Sneppen K. Variability-based sequence alignment identifies residues responsible for functional differences in alpha and beta tubulin. Protein Science : a Publication of the Protein Society. 13: 25-31. PMID 14691218 DOI: 10.1110/Ps.03225304  0.96
2004 Sneppen K, Rosvall M, Trusina A, Minnhagen P. A simple model for self-organization of bipartite networks Europhysics Letters. 67: 349-354. DOI: 10.1209/Epl/I2004-10074-0  0.96
2004 Korsnes R, Souza SR, Donangelo R, Hansen A, Paczuski M, Sneppen K. Scaling in fracture and refreezing of sea ice Physica a: Statistical Mechanics and Its Applications. 331: 291-296. DOI: 10.1016/S0378-4371(03)00627-7  0.96
2004 Minnhagen P, Rosvall M, Sneppen K, Trusina A. Self-organization of structures and networks from merging and small-scale fluctuations Physica a: Statistical Mechanics and Its Applications. 340: 725-732. DOI: 10.1016/J.Physa.2004.05.019  0.96
2004 Alstrøm P, Bohr T, Christensen K, Flyvbjerg H, Jensen MH, Lautrup B, Sneppen K. Editorial: Complexity and criticality Physica a-Statistical Mechanics and Its Applications. 340. DOI: 10.1016/J.Physa.2004.05.001  0.96
2004 Simonsen I, Eriksen KA, Maslov S, Sneppen K. Diffusion on complex networks: A way to probe their large-scale topological structures Physica a: Statistical Mechanics and Its Applications. 336: 163-173. DOI: 10.1016/J.Physa.2004.01.021  0.96
2003 Ferkinghoff-Borg J, Jensen MH, Mathiesen J, Olesen P, Sneppen K. Competition between diffusion and fragmentation: an important evolutionary process of nature. Physical Review Letters. 91: 266103. PMID 14754071 DOI: 10.1103/Physrevlett.91.266103  0.96
2003 Baek K, Svenningsen S, Eisen H, Sneppen K, Brown S. Single-cell analysis of lambda immunity regulation. Journal of Molecular Biology. 334: 363-72. PMID 14623180 DOI: 10.1016/J.Jmb.2003.09.037  0.96
2003 Rosvall M, Sneppen K. Modeling dynamics of information networks. Physical Review Letters. 91: 178701. PMID 14611380 DOI: 10.1103/Physrevlett.91.178701  0.96
2003 Eriksen KA, Simonsen I, Maslov S, Sneppen K. Modularity and extreme edges of the internet. Physical Review Letters. 90: 148701. PMID 12731952 DOI: 10.1103/Physrevlett.90.148701  0.96
2003 Jensen MH, Sneppen K, Tiana G. Sustained oscillations and time delays in gene expression of protein Hes1 Febs Letters. 541: 176-177. PMID 12706840 DOI: 10.1016/S0014-5793(03)00279-5  0.96
2003 Hwa T, Marinari E, Sneppen K, Tang Lh. Localization of denaturation bubbles in random DNA sequences Proceedings of the National Academy of Sciences of the United States of America. 100: 4411-4416. PMID 12672955 DOI: 10.1073/Pnas.0736291100  0.96
2002 Aurell E, Sneppen K. Epigenetics as a first exit problem Physical Review Letters. 88: 481011-481014. PMID 11801174 DOI: 10.1103/Physrevlett.88.048101  0.96
2002 Tiana G, Jensen MH, Sneppen K. Time delay as a key to apoptosis induction in the p53 network European Physical Journal B. 29: 135-140. DOI: 10.1140/Epjb/E2002-00271-1  0.96
2002 Aurell E, Brown S, Johanson J, Sneppen K. Stability puzzles in phage λ Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 65: 051914/1-051914/9. DOI: 10.1103/PhysRevE.65.051914  0.96
2002 Bakk A, Dommersnes PG, Hansen A, Høye JS, Sneppen K, Jensen MH. Thermodynamics of proteins: Fast folders and sharp transitions Computer Physics Communications. 147: 307-312. DOI: 10.1016/S0010-4655(02)00293-X  0.96
2001 Borg J, Jensen MH, Sneppen K, Tiana G. Hydrogen bonds in polymer folding Physical Review Letters. 86: 1031-1033. DOI: 10.1103/Physrevlett.86.1031  0.96
2000 Hansen A, Jensen MH, Sneppen K, Zocchi G. Modeling molecular motors as folding-unfolding cycles Europhysics Letters. 50: 120-124. DOI: 10.1209/Epl/I2000-00101-8  0.96
1999 Bornholdt S, Sneppen K. Punctuated equilibrium in evolving genetic networks Computer Physics Communications. 615. DOI: 10.1016/S0010-4655(06)70022-4  0.4
1998 Bornholdt S, Sneppen K. Neutral Mutations And Punctuated Equilibrium In Evolving Genetic Networks Physical Review Letters. 81: 236-239. DOI: 10.1103/Physrevlett.81.236  0.4
1998 Flyvbjerg H, Hertz J, Jensen MH, Mouritsen OG, Sneppen K, Powell J. Physics of Biological Systems: From Molecules to Species Physics Today. 51: 55-56. DOI: 10.1063/1.882101  0.96
1997 Sams T, Sneppen K, Jensen MH, Ellegaard C, Christensen BE, Thrane U. Morphological Instabilities In A Growing Yeast Colony : Experiment And Theory Physical Review Letters. 79: 313-316. DOI: 10.1103/Physrevlett.79.313  0.96
1997 Markosová M, Jensen MH, Lauritsen KB, Sneppen K. Onset of criticality and transport in a driven diffusive system Physical Review E. 55: 2085-2088. DOI: 10.1103/Physreve.55.R2085  0.96
1997 Lauritsen KB, Sneppen K, Markošová M, Jensen MH. Directed percolation with an absorbing boundary Physica a-Statistical Mechanics and Its Applications. 247: 1-9. DOI: 10.1016/S0378-4371(97)00403-2  0.96
1995 Sneppen K, Bak P, Flyvbjerg H, Jensen MH. Evolution as a self-organized critical phenomenon Proceedings of the National Academy of Sciences of the United States of America. 92: 5209-5213. PMID 7761475 DOI: 10.1073/Pnas.92.11.5209  0.96
1995 Huber G, Jensen MH, Sneppen K. Distributions of self-interactions and voids in (1+1)-dimensional directed percolation Physical Review E. 52. DOI: 10.1103/Physreve.52.R2133  0.96
1995 Falk J, Sneppen K, Jensen MH. Self-organized critical dynamics of fronts: Intermittency and multiscaling Chaos, Solitons and Fractals. 5: 1847-1854. DOI: 10.1016/0960-0779(94)00188-V  0.96
1994 Sneppen K, Jensen MH. Multidiffusion in critical dynamics of strings and membranes Physical Review E. 49: 919-922. DOI: 10.1103/Physreve.49.919  0.96
1994 Falk J, Jensen MH, Sneppen K. Intermittent dynamics and self-organized depinning in propagating fronts Physical Review E. 49: 2804-2808. DOI: 10.1103/Physreve.49.2804  0.96
1994 Avdeichikov V, Bogdanov A, Lozhkin O, Murin Y, Zubkov M, Nybø K, ølberg E, Thorsteinsen TF, Bondorf J, Sneppen K, Berg M, Carlén L, Elmér R, Ghetti R, Jakobsson B, et al. Experimental isotopic effects in comparison to statistical prescriptions for fragment production in 32A MeV and 14A MeV 14N + 112,124Sn reactions Physica Scripta. 50: 624-627. DOI: 10.1088/0031-8949/50/6/004  0.96
1993 Flyvbjerg H, Sneppen K, Bak P. Mean field theory for a simple model of evolution. Physical Review Letters. 71: 4087-4090. PMID 10055150 DOI: 10.1103/Physrevlett.71.4087  0.4
1993 Bak P, Sneppen K. Punctuated equilibrium and criticality in a simple model of evolution. Physical Review Letters. 71: 4083-4086. PMID 10055149 DOI: 10.1103/Physrevlett.71.4083  0.4
1993 Sneppen K, Jensen MH. Colored activity in self-organized critical interface dynamics Physical Review Letters. 71: 101-104. DOI: 10.1103/Physrevlett.71.101  0.96
1993 Sneppen K, Jensen MH. Sneppen and Jensen reply Physical Review Letters. 70: 3833. DOI: 10.1103/Physrevlett.70.3833  0.96
1992 Procaccia I, Jensen MH, L’vov VS, Sneppen K, Zeitak R. Surface roughening and the long-wavelength properties of the Kuramoto-Sivashinsky equation. Physical Review A. 46: 3220-3224. PMID 9908489 DOI: 10.1103/Physreva.46.3220  0.96
1992 Sneppen K, Krug J, Jensen MH, Jayaprakash C, Bohr T. Dynamic scaling and crossover analysis for the Kuramoto-Sivashinsky equation. Physical Review. A. 46: R7351-R7354. PMID 9908164 DOI: 10.1103/Physreva.46.R7351  0.96
1992 Hennino T, Ramstein B, Bachelier D, Bohlen HG, Boyard JL, Ellegaard C, Gaarde C, Gosset J, Jourdain JC, Larsen JS, Lemaire MC, L'Hôte D, Morsch HP, Österlund M, Poitou J, ... ... Sneppen K, et al. Study of decay and absorption of the Δ resonance in nuclei with a 4π detector Physics Letters B. 283: 42-46. DOI: 10.1016/0370-2693(92)91423-7  0.96
1988 Randrup J, Robinson MM, Sneppen K. Fragment interactions in nuclear disassembly Physics Letters B. 208: 25-32. DOI: 10.1016/0370-2693(88)91197-5  0.96
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