| Year |
Citation |
Score |
| 2019 |
Zhang J, Gelman IH, Katsuta E, Liang Y, Wang X, Li J, Qu J, Yan L, Takabe K, Hochwald SN. Glucose drives growth factor-independent esophageal cancer proliferation via phosphohistidine-FAK signaling. Cellular and Molecular Gastroenterology and Hepatology. PMID 30836148 DOI: 10.1016/j.jcmgh.2019.02.009 |
0.36 |
|
| 2018 |
Kafková L, Tu C, Pazzo KL, Smith KP, Debler EW, Paul KS, Qu J, Read LK. Trypanosoma brucei PRMT1 Is a Nucleic Acid Binding Protein with a Role in Energy Metabolism and the Starvation Stress Response. Mbio. 9. PMID 30563898 DOI: 10.1128/mBio.02430-18 |
0.36 |
|
| 2018 |
Zhu X, Shen X, Qu J, Straubinger RM, Jusko WJ. Multi-Scale Network Model Supported by Proteomics for Analysis of Combined Gemcitabine and Birinapant Effects in Pancreatic Cancer Cells. Cpt: Pharmacometrics & Systems Pharmacology. PMID 30084546 DOI: 10.1002/psp4.12320 |
0.68 |
|
| 2018 |
Shen S, An B, Wang X, Hilchey SP, Li J, Cao J, Tian Y, Hu C, Jin L, Ng A, Tu C, Qu M, ZAnd M, Qu J. A Surfactant Cocktail-Aided Extraction/Precipitation/On-Pellet Digestion (SEPOD) Strategy Enables Rapid, Efficient and Reproducible Sample Preparation for Large-Scale Quantitative Proteomics. Analytical Chemistry. PMID 30078316 DOI: 10.1021/acs.analchem.8b02172 |
0.36 |
|
| 2018 |
Tu C, Fiandalo MV, Pop E, Stocking JJ, Azabdaftari G, Li J, Wei H, Ma D, Qu J, Mohler JL, Tang L, Wu Y. Proteomic Analysis of Charcoal-Stripped Fetal Bovine Serum Reveals Changes in the Insulin-Like Growth Factor Signaling Pathway. Journal of Proteome Research. PMID 30014700 DOI: 10.1021/acs.jproteome.8b00135 |
0.36 |
|
| 2018 |
Shen X, Shen S, Li J, Hu Q, Nie L, Tu C, Wang X, Poulsen DJ, Orsburn BC, Wang J, Qu J. IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts. Proceedings of the National Academy of Sciences of the United States of America. PMID 29743190 DOI: 10.1073/pnas.1800541115 |
0.36 |
|
| 2018 |
Zhu X, Shen X, Qu J, Straubinger RM, Jusko WJ. Proteomic Analysis of Combined Gemcitabine and Birinapant in Pancreatic Cancer Cells. Frontiers in Pharmacology. 9: 84. PMID 29520231 DOI: 10.3389/fphar.2018.00084 |
0.68 |
|
| 2018 |
Caceres T, Thakur A, Price OM, Ippolito N, Li J, Qu J, Acevedo O, Hevel JM. Phe 71 in type III Trypanosomal protein arginine methyltransferase 7 (TbPRMT7) restricts the enzyme to monomethylation. Biochemistry. PMID 29378138 DOI: 10.1021/acs.biochem.7b01265 |
0.36 |
|
| 2018 |
Ackerman SD, Luo R, Poitelon Y, Mogha A, Harty BL, D'Rozario M, Sanchez NE, Lakkaraju AKK, Gamble P, Li J, Qu J, MacEwan MR, Ray WZ, Aguzzi A, Feltri ML, et al. GPR56/ADGRG1 regulates development and maintenance of peripheral myelin. The Journal of Experimental Medicine. PMID 29367382 DOI: 10.1084/jem.20161714 |
0.36 |
|
| 2018 |
Wang X, Niu J, Li J, Shen X, Shen S, Straubinger RM, Qu J. Temporal Effects of Combined Birinapant and Paclitaxel on Pancreatic Cancer Cells Investigated via Large-scale, Ion-Current-Based Quantitative Proteomics (IonStar). Molecular & Cellular Proteomics : McP. PMID 29358341 DOI: 10.1074/mcp.RA117.000519 |
0.68 |
|
| 2017 |
Gururaj S, Evely KM, Pryce KD, Li J, Qu J, Bhattacharjee A. Protein Kinase A induced internalization of Slack channels from the neuronal membrane occurs by Adaptor Protein-2/Clathrin mediated endocytosis. The Journal of Biological Chemistry. PMID 28982974 DOI: 10.1074/jbc.M117.804716 |
0.36 |
|
| 2017 |
Liu G, Cheng K, Lo CY, Li J, Qu J, Neelamegham S. A comprehensive, open-source platform for mass spectrometry based glycoproteomics data analysis. Molecular & Cellular Proteomics : McP. PMID 28887379 DOI: 10.1074/mcp.M117.068239 |
0.36 |
|
| 2017 |
Ma JH, Shen S, Wang JJ, He Z, Poon A, Li J, Qu J, Zhang SX. Comparative Proteomic Analysis of the Mitochondria-associated ER Membrane (MAM) in a Long-term Type 2 Diabetic Rodent Model. Scientific Reports. 7: 2062. PMID 28522876 DOI: 10.1038/s41598-017-02213-1 |
0.36 |
|
| 2017 |
Shen X, Shen S, Li J, Hu Q, Nie L, Tu C, Wang X, Orsburn B, Wang J, Qu J. An IonStar experimental strategy for MS1 ion current-based quantification using ultra-high-field Orbitrap: reproducible, in-depth and accurate protein measurement in larger cohorts. Journal of Proteome Research. PMID 28412812 DOI: 10.1021/acs.jproteome.7b00061 |
0.36 |
|
| 2016 |
Tu C, Mojica W, Straubinger RM, Li J, Shen S, Qu M, Nie L, Roberts R, An B, Qu J. Quantitative proteomic profiling of paired cancerous and normal colon epithelial cells isolated freshly from colorectal cancer patients. Proteomics. Clinical Applications. PMID 27943637 DOI: 10.1002/prca.201600155 |
0.68 |
|
| 2016 |
Tu C, Bu Y, Vujcic M, Shen S, Li J, Qu M, Hangauer DG, Clements JL, Qu J. Ion Current-based Proteomic Profiling in Understanding the Inhibitory Effect of Tumor Necrosis Factor Alpha on Myogenic Differentiation. Journal of Proteome Research. PMID 27480135 DOI: 10.1021/acs.jproteome.6b00321 |
0.36 |
|
| 2016 |
Tu C, Li J, Shen S, Sheng Q, Shyr Y, Qu J. Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument. Plos One. 11: e0160160. PMID 27472422 DOI: 10.1371/journal.pone.0160160 |
0.36 |
|
| 2016 |
Li YW, Guo J, Shen H, Li J, Yang N, Frangou C, Wilson KE, Zhang Y, Mussell AL, Sudol M, Farooq A, Qu J, Zhang J. Phosphorylation of Tyr188 in the WW domain of YAP1 plays an essential role in YAP1-induced cellular transformation. Cell Cycle (Georgetown, Tex.). 0. PMID 27428284 DOI: 10.1080/15384101.2016.1207836 |
0.68 |
|
| 2016 |
Qu M, An B, Shen S, Zhang M, Shen X, Duan X, Balthasar JP, Qu J. Qualitative and quantitative characterization of protein biotherapeutics with liquid chromatography mass spectrometry. Mass Spectrometry Reviews. PMID 27097288 DOI: 10.1002/mas.21500 |
0.68 |
|
| 2016 |
Shen S, Jiang X, Li J, Straubinger RM, Suarez M, Tu C, Duan X, Thompson AC, Qu J. Large-Scale, Ion-Current-Based Proteomic Investigation of the Rat Striatal Proteome in a Model of Short- and Long-Term Cocaine Withdrawal. Journal of Proteome Research. PMID 27018876 DOI: 10.1021/acs.jproteome.6b00137 |
0.68 |
|
| 2015 |
Shen S, Li J, Hilchey S, Shen X, Tu C, Qiu X, Ng A, Ghaemmaghami S, Wu H, ZAnd M, Qu J. An Ion-Current-Based Temporal Proteomic Profiling of Influenza A Virus Infected Mouse Lungs Revealed Underlying Mechanisms of Altered Integrity of the Lung Microvascular Barrier. Journal of Proteome Research. PMID 26650791 DOI: 10.1021/acs.jproteome.5b00927 |
0.68 |
|
| 2015 |
Shen X, Nair B, Mahajan SD, Jiang X, Li J, Shen S, Tu C, Hsiao CB, Schwartz SA, Qu J. New Insights into the Disease Progression Control Mechanisms by Comparing Long-Term-Nonprogressors versus Normal-Progressors among HIV-1-Positive Patients Using an Ion Current-Based MS1 Proteomic Profiling. Journal of Proteome Research. PMID 26484939 DOI: 10.1021/acs.jproteome.5b00621 |
0.68 |
|
| 2015 |
Tu C, Sheng Q, Li J, Ma D, Shen X, Wang X, Shyr Y, Yi Z, Qu J. Optimization of search engines and post-processing approaches to maximize peptide/protein identification for high-resolution mass data. Journal of Proteome Research. PMID 26390080 DOI: 10.1021/acs.jproteome.5b00536 |
0.36 |
|
| 2015 |
Shen X, Hu Q, Li J, Wang J, Qu J. Experimental Null Method to Guide the Development of Technical Procedures and to Control False-Positive Discovery in Quantitative Proteomics. Journal of Proteome Research. 14: 4147-57. PMID 26051676 DOI: 10.1021/acs.jproteome.5b00200 |
0.36 |
|
| 2015 |
Lott K, Mukhopadhyay S, Li J, Wang J, Yao J, Sun Y, Qu J, Read LK. Arginine methylation of DRBD18 differentially impacts its opposing effects on the trypanosome transcriptome. Nucleic Acids Research. 43: 5501-23. PMID 25940618 DOI: 10.1093/nar/gkv428 |
0.68 |
|
| 2015 |
Morales Y, Nitzel DV, Price OM, Gui S, Li J, Qu J, Hevel JM. Redox Control of Protein Arginine Methyltransferase 1 (PRMT1) Activity. The Journal of Biological Chemistry. 290: 14915-26. PMID 25911106 DOI: 10.1074/jbc.M115.651380 |
0.68 |
|
| 2015 |
Tu C, Beharry KD, Shen X, Li J, Wang L, Aranda JV, Qu J. Proteomic profiling of the retinas in a neonatal rat model of oxygen-induced retinopathy with a reproducible ion-current-based MS1 approach. Journal of Proteome Research. 14: 2109-20. PMID 25780855 DOI: 10.1021/pr501238m |
0.36 |
|
| 2015 |
Kamisoglu K, Sukumaran S, Nouri-Nigjeh E, Tu C, Li J, Shen X, Duan X, Qu J, Almon RR, DuBois DC, Jusko WJ, Androulakis IP. Tandem analysis of transcriptome and proteome changes after a single dose of corticosteroid: a systems approach to liver function in pharmacogenomics. Omics : a Journal of Integrative Biology. 19: 80-91. PMID 25611119 DOI: 10.1089/omi.2014.0130 |
0.68 |
|
| 2014 |
Zhang T, Price JC, Nouri-Nigjeh E, Li J, Hellerstein MK, Qu J, Ghaemmaghami S. Kinetics of precursor labeling in stable isotope labeling in cell cultures (SILAC) experiments. Analytical Chemistry. 86: 11334-41. PMID 25301408 DOI: 10.1021/ac503067a |
0.68 |
|
| 2014 |
Tu C, Sheng Q, Li J, Shen X, Zhang M, Shyr Y, Qu J. ICan: an optimized ion-current-based quantification procedure with enhanced quantitative accuracy and sensitivity in biomarker discovery. Journal of Proteome Research. 13: 5888-97. PMID 25285707 DOI: 10.1021/pr5008224 |
0.36 |
|
| 2014 |
An B, Zhang M, Qu J. Toward sensitive and accurate analysis of antibody biotherapeutics by liquid chromatography coupled with mass spectrometry. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 42: 1858-66. PMID 25185260 DOI: 10.1124/dmd.114.058917 |
0.68 |
|
| 2014 |
Nouri-Nigjeh E, Sukumaran S, Tu C, Li J, Shen X, Duan X, DuBois DC, Almon RR, Jusko WJ, Qu J. Highly multiplexed and reproducible ion-current-based strategy for large-scale quantitative proteomics and the application to protein expression dynamics induced by methylprednisolone in 60 rats. Analytical Chemistry. 86: 8149-57. PMID 25072516 DOI: 10.1021/ac501380s |
0.68 |
|
| 2014 |
Browne RW, Weinstock-Guttman B, Zivadinov R, Horakova D, Bodziak ML, Tamaño-Blanco M, Badgett D, Tyblova M, Vaneckova M, Seidl Z, Krasensky J, Bergsland N, Ramasamy DP, Hagemeier J, Qu J, et al. Serum lipoprotein composition and vitamin D metabolite levels in clinically isolated syndromes: Results from a multi-center study. The Journal of Steroid Biochemistry and Molecular Biology. 143: 424-33. PMID 24950029 DOI: 10.1016/j.jsbmb.2014.06.007 |
0.68 |
|
| 2014 |
Shen X, Young R, Canty JM, Qu J. Quantitative proteomics in cardiovascular research: global and targeted strategies. Proteomics. Clinical Applications. 8: 488-505. PMID 24920501 DOI: 10.1002/prca.201400014 |
0.68 |
|
| 2014 |
Qu J, Young R, Page BJ, Shen X, Tata N, Li J, Duan X, Fallavollita JA, Canty JM. Reproducible ion-current-based approach for 24-plex comparison of the tissue proteomes of hibernating versus normal myocardium in swine models. Journal of Proteome Research. 13: 2571-84. PMID 24697261 DOI: 10.1021/pr5000472 |
0.68 |
|
| 2014 |
Tu C, Li J, Sheng Q, Zhang M, Qu J. Systematic assessment of survey scan and MS2-based abundance strategies for label-free quantitative proteomics using high-resolution MS data. Journal of Proteome Research. 13: 2069-79. PMID 24635752 DOI: 10.1021/pr401206m |
0.36 |
|
| 2014 |
Gui S, Gathiaka S, Li J, Qu J, Acevedo O, Hevel JM. A remodeled protein arginine methyltransferase 1 (PRMT1) generates symmetric dimethylarginine. The Journal of Biological Chemistry. 289: 9320-7. PMID 24478314 DOI: 10.1074/jbc.M113.535278 |
0.68 |
|
| 2014 |
Tu C, Mammen MJ, Li J, Shen X, Jiang X, Hu Q, Wang J, Sethi S, Qu J. Large-scale, ion-current-based proteomics investigation of bronchoalveolar lavage fluid in chronic obstructive pulmonary disease patients. Journal of Proteome Research. 13: 627-39. PMID 24188068 DOI: 10.1021/pr4007602 |
0.36 |
|
| 2013 |
O'Connell K, Li J, Engler F, Hennessy K, O'Neill F, Straubinger RM, Qu J, O'Connor R. Determination of the Proteomic Response to Lapatinib Treatment using a comprehensive and reproducible ion-current-based proteomics strategy. Journal of Proteomics and Genomics Research. 1: 27-42. PMID 29046878 DOI: 10.14302/issn.2326-0793.jpgr-13-257 |
0.68 |
|
| 2013 |
Tu C, Li J, Jiang X, Sheflin LG, Pfeffer BA, Behringer M, Fliesler SJ, Qu J. Ion-current-based proteomic profiling of the retina in a rat model of Smith-Lemli-Opitz syndrome. Molecular & Cellular Proteomics : McP. 12: 3583-98. PMID 23979708 DOI: 10.1074/mcp.M113.027847 |
0.36 |
|
| 2013 |
Lott K, Li J, Fisk JC, Wang H, Aletta JM, Qu J, Read LK. Global proteomic analysis in trypanosomes reveals unique proteins and conserved cellular processes impacted by arginine methylation. Journal of Proteomics. 91: 210-25. PMID 23872088 DOI: 10.1016/j.jprot.2013.07.010 |
0.68 |
|
| 2013 |
Weinstock-Guttman B, Zivadinov R, Horakova D, Havrdova E, Qu J, Shyh G, Lakota E, O'Connor K, Badgett D, Tamaño-Blanco M, Tyblova M, Hussein S, Bergsland N, Willis L, Krasensky J, et al. Lipid profiles are associated with lesion formation over 24 months in interferon-β treated patients following the first demyelinating event. Journal of Neurology, Neurosurgery, and Psychiatry. 84: 1186-91. PMID 23595944 DOI: 10.1136/jnnp-2012-304740 |
0.68 |
|
| 2013 |
Lo CY, Antonopoulos A, Gupta R, Qu J, Dell A, Haslam SM, Neelamegham S. Competition between core-2 GlcNAc-transferase and ST6GalNAc-transferase regulates the synthesis of the leukocyte selectin ligand on human P-selectin glycoprotein ligand-1. The Journal of Biological Chemistry. 288: 13974-87. PMID 23548905 DOI: 10.1074/jbc.M113.463653 |
0.68 |
|
| 2013 |
Zivadinov R, Treu CN, Weinstock-Guttman B, Turner C, Bergsland N, O'Connor K, Dwyer MG, Carl E, Ramasamy DP, Qu J, Ramanathan M. Interdependence and contributions of sun exposure and vitamin D to MRI measures in multiple sclerosis. Journal of Neurology, Neurosurgery, and Psychiatry. 84: 1075-81. PMID 23385850 DOI: 10.1136/jnnp-2012-304661 |
0.68 |
|
| 2013 |
Horakova D, Zivadinov R, Weinstock-Guttman B, Havrdova E, Qu J, Tamaño-Blanco M, Badgett D, Tyblova M, Bergsland N, Hussein S, Willis L, Krasensky J, Vaneckova M, Seidl Z, Lelkova P, et al. Environmental factors associated with disease progression after the first demyelinating event: results from the multi-center SET study. Plos One. 8: e53996. PMID 23320113 DOI: 10.1371/journal.pone.0053996 |
0.68 |
|
| 2013 |
Fisk JC, Li J, Wang H, Aletta JM, Qu J, Read LK. Proteomic analysis reveals diverse classes of arginine methylproteins in mitochondria of trypanosomes. Molecular & Cellular Proteomics : McP. 12: 302-11. PMID 23152538 DOI: 10.1074/mcp.M112.022533 |
0.68 |
|
| 2012 |
Jackson CA, Yadav N, Min S, Li J, Milliman EJ, Qu J, Chen YC, Yu MC. Proteomic analysis of interactors for yeast protein arginine methyltransferase Hmt1 reveals novel substrate and insights into additional biological roles. Proteomics. 12: 3304-14. PMID 22997150 DOI: 10.1002/pmic.201200132 |
0.36 |
|
| 2012 |
Tu C, Li J, Bu Y, Hangauer D, Qu J. An ion-current-based, comprehensive and reproducible proteomic strategy for comparative characterization of the cellular responses to novel anti-cancer agents in a prostate cell model. Journal of Proteomics. 77: 187-201. PMID 22982362 DOI: 10.1016/j.jprot.2012.08.020 |
0.36 |
|
| 2012 |
Jamesdaniel S, Coling D, Hinduja S, Ding D, Li J, Cassidy L, Seigel GM, Qu J, Salvi R. Cisplatin-induced ototoxicity is mediated by nitroxidative modification of cochlear proteins characterized by nitration of Lmo4. The Journal of Biological Chemistry. 287: 18674-86. PMID 22493493 DOI: 10.1074/jbc.M111.297960 |
0.68 |
|
| 2010 |
Cao J, Gonzalez-Covarrubias V, Covarrubias VM, Straubinger RM, Wang H, Duan X, Yu H, Qu J, Blanco JG. A rapid, reproducible, on-the-fly orthogonal array optimization method for targeted protein quantification by LC/MS and its application for accurate and sensitive quantification of carbonyl reductases in human liver. Analytical Chemistry. 82: 2680-9. PMID 20218584 DOI: 10.1021/ac902314m |
0.68 |
|
| 2009 |
Duan X, Young R, Straubinger RM, Page B, Cao J, Wang H, Yu H, Canty JM, Qu J. A straightforward and highly efficient precipitation/on-pellet digestion procedure coupled with a long gradient nano-LC separation and Orbitrap mass spectrometry for label-free expression profiling of the swine heart mitochondrial proteome. Journal of Proteome Research. 8: 2838-50. PMID 19290621 DOI: 10.1021/pr900001t |
0.68 |
|
| 2009 |
Wang H, Straubinger RM, Aletta JM, Cao J, Duan X, Yu H, Qu J. Accurate localization and relative quantification of arginine methylation using nanoflow liquid chromatography coupled to electron transfer dissociation and orbitrap mass spectrometry. Journal of the American Society For Mass Spectrometry. 20: 507-19. PMID 19110445 DOI: 10.1016/j.jasms.2008.11.008 |
0.68 |
|
| 2008 |
Gaspar JR, Qu J, Straubinger NL, Straubinger RM. Highly selective and sensitive assay for paclitaxel accumulation by tumor cells based on selective solid phase extraction and micro-flow liquid chromatography coupled to mass spectrometry. The Analyst. 133: 1742-8. PMID 19082078 DOI: 10.1039/b806856a |
0.68 |
|
| 2008 |
Yu H, Straubinger RM, Cao J, Wang H, Qu J. Ultra-sensitive quantification of paclitaxel using selective solid-phase extraction in conjunction with reversed-phase capillary liquid chromatography/tandem mass spectrometry. Journal of Chromatography. A. 1210: 160-7. PMID 18834593 DOI: 10.1016/j.chroma.2008.09.052 |
0.68 |
|
| 2007 |
Straubinger RM, Krzyzanski W, Francoforte CM, Qu J. Applications of quantitative pharmacodynamic effect markers in drug target identification and therapy development. Anticancer Research. 27: 1237-46. PMID 17593615 |
0.68 |
|
| 2007 |
Drake EJ, Cao J, Qu J, Shah MB, Straubinger RM, Gulick AM. The 1.8 A crystal structure of PA2412, an MbtH-like protein from the pyoverdine cluster of Pseudomonas aeruginosa. The Journal of Biological Chemistry. 282: 20425-34. PMID 17502378 DOI: 10.1074/jbc.M611833200 |
0.68 |
|
| 2007 |
Qu J, Qu Y, Straubinger RM. Ultra-sensitive quantification of corticosteroids in plasma samples using selective solid-phase extraction and reversed-phase capillary high-performance liquid chromatography/tandem mass spectrometry. Analytical Chemistry. 79: 3786-93. PMID 17411010 DOI: 10.1021/ac062184r |
0.68 |
|
| 2006 |
Qu J, Jusko WJ, Straubinger RM. Utility of cleavable isotope-coded affinity-tagged reagents for quantification of low-copy proteins induced by methylprednisolone using liquid chromatography/tandem mass spectrometry. Analytical Chemistry. 78: 4543-52. PMID 16808464 DOI: 10.1021/ac0521697 |
0.68 |
|
| 2005 |
Qu J, Straubinger RM. Improved sensitivity for quantification of proteins using triply charged cleavable isotope-coded affinity tag peptides. Rapid Communications in Mass Spectrometry : Rcm. 19: 2857-64. PMID 16155978 DOI: 10.1002/rcm.2138 |
0.68 |
|
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