Year |
Citation |
Score |
2022 |
Husser C, Vuilleumier S, Ryckelynck M. FluorMango, an RNA-Based Fluorogenic Biosensor for the Direct and Specific Detection of Fluoride. Small (Weinheim An Der Bergstrasse, Germany). e2205232. PMID 36436882 DOI: 10.1002/smll.202205232 |
0.42 |
|
2022 |
Husser C, Baudrey S, Ryckelynck M. High-Throughput Development and Optimization of RNA-Based Fluorogenic Biosensors of Small Molecules Using Droplet-Based Microfluidics. Methods in Molecular Biology (Clifton, N.J.). 2570: 243-269. PMID 36156788 DOI: 10.1007/978-1-0716-2695-5_19 |
0.361 |
|
2022 |
Fam KT, Pelletier R, Bouhedda F, Ryckelynck M, Collot M, Klymchenko AS. Rational Design of Self-Quenched Rhodamine Dimers as Fluorogenic Aptamer Probes for Live-Cell RNA Imaging. Analytical Chemistry. PMID 35486532 DOI: 10.1021/acs.analchem.1c04556 |
0.737 |
|
2022 |
Geraci I, Autour A, Pietruschka G, Shiian A, Borisova M, Mayer C, Ryckelynck M, Mayer G. Fluorogenic RNA-Based Biosensor to Sense the Glycolytic Flux in Mammalian Cells. Acs Chemical Biology. PMID 35427113 DOI: 10.1021/acschembio.2c00100 |
0.316 |
|
2021 |
Cubi R, Bouhedda F, Collot M, Klymchenko AS, Ryckelynck M. µIVC-Useq: a microfluidic-assisted high-throughput functionnal screening in tandem with next generation sequencing and artificial neural network to rapidly characterize RNA molecules. Rna (New York, N.Y.). PMID 33952671 DOI: 10.1261/rna.077586.120 |
0.375 |
|
2021 |
Bouhedda F, Cubi R, Baudrey S, Ryckelynck M. μIVC-Seq: A Method for Ultrahigh-Throughput Development and Functional Characterization of Small RNAs. Methods in Molecular Biology (Clifton, N.J.). 2300: 203-237. PMID 33792882 DOI: 10.1007/978-1-0716-1386-3_17 |
0.389 |
|
2020 |
Ryckelynck M. Development and Applications of Fluorogen/Light-Up RNA Aptamer Pairs for RNA Detection and More. Methods in Molecular Biology (Clifton, N.J.). 2166: 73-102. PMID 32710404 DOI: 10.1007/978-1-0716-0712-1_5 |
0.507 |
|
2020 |
Trachman RJ, Cojocaru R, Wu D, Piszczek G, Ryckelynck M, Unrau PJ, Ferré-D'Amaré AR. Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair. Structure (London, England : 1993). PMID 32386573 DOI: 10.1016/J.Str.2020.04.007 |
0.497 |
|
2020 |
Pernod K, Schaeffer L, Chicher J, Hok E, Rick C, Geslain R, Eriani G, Westhof E, Ryckelynck M, Martin F. The nature of the purine at position 34 in tRNAs of 4-codon boxes is correlated with nucleotides at positions 32 and 38 to maintain decoding fidelity. Nucleic Acids Research. PMID 32266934 DOI: 10.1093/Nar/Gkaa221 |
0.397 |
|
2019 |
Bouhedda F, Fam KT, Collot M, Autour A, Marzi S, Klymchenko A, Ryckelynck M. A dimerization-based fluorogenic dye-aptamer module for RNA imaging in live cells. Nature Chemical Biology. PMID 31636432 DOI: 10.1038/S41589-019-0381-8 |
0.74 |
|
2019 |
Ryckelynck M. Development and engineering of artificial RNAs. Methods (San Diego, Calif.). 161: 1-2. PMID 31195094 DOI: 10.1016/J.Ymeth.2019.06.009 |
0.388 |
|
2019 |
Trachman RJ, Autour A, Jeng SCY, Abdolahzadeh A, Andreoni A, Cojocaru R, Garipov R, Dolgosheina EV, Knutson JR, Ryckelynck M, Unrau PJ, Ferré-D'Amaré AR. Structure and functional reselection of the Mango-III fluorogenic RNA aptamer. Nature Chemical Biology. 15: 472-479. PMID 30992561 DOI: 10.2210/Pdb6E8S/Pdb |
0.445 |
|
2019 |
Autour A, Bouhedda F, Cubi R, Ryckelynck M. Optimization of fluorogenic RNA-based biosensors using droplet-based microfluidic ultrahigh-throughput screening. Methods (San Diego, Calif.). PMID 30902664 DOI: 10.1016/J.Ymeth.2019.03.015 |
0.409 |
|
2018 |
Trachman R, Abdolahzadeh A, Andreoni A, Cojocaru R, Knutson JR, Ryckelynck M, Unrau PJ, Ferré-D'Amaré A. Crystal structures of the Mango-II RNA aptamer reveal heterogeneous fluorophore binding and guide engineering of variants with improved selectivity and brightness. Biochemistry. PMID 29768001 DOI: 10.1021/Acs.Biochem.8B00399 |
0.461 |
|
2018 |
Autour A, C Y Jeng S, D Cawte A, Abdolahzadeh A, Galli A, Panchapakesan SSS, Rueda D, Ryckelynck M, Unrau PJ. Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells. Nature Communications. 9: 656. PMID 29440634 DOI: 10.1038/S41467-018-02993-8 |
0.513 |
|
2018 |
Cawte A, Jeng S, Autour A, Ryckelynck M, Unrau P, Rueda D. Cellular Imaging of Small RNAs using Fluorescent RNA-Mango Aptamers Biophysical Journal. 114: 215a-216a. DOI: 10.1016/J.Bpj.2017.11.1203 |
0.478 |
|
2017 |
Bouhedda F, Autour A, Ryckelynck M. Light-Up RNA Aptamers and Their Cognate Fluorogens: From Their Development to Their Applications. International Journal of Molecular Sciences. 19. PMID 29295531 DOI: 10.3390/Ijms19010044 |
0.501 |
|
2017 |
Fernandez-Millan P, Autour A, Ennifar E, Westhof E, Ryckelynck M. Crystal structure and fluorescence properties of the iSpinach aptamer in complex with DFHBI. Rna (New York, N.Y.). PMID 28939697 DOI: 10.1261/Rna.063008.117 |
0.388 |
|
2017 |
Autour A, Ryckelynck M. Ultrahigh-Throughput Improvement and Discovery of Enzymes Using Droplet-Based Microfluidic Screening Micromachines. 8: 128. DOI: 10.3390/Mi8040128 |
0.364 |
|
2016 |
Matsumura S, Kun Á, Ryckelynck M, Coldren F, Szilágyi A, Jossinet F, Rick C, Nghe P, Szathmáry E, Griffiths AD. Transient compartmentalization of RNA replicators prevents extinction due to parasites. Science (New York, N.Y.). 354: 1293-1296. PMID 27940874 DOI: 10.1126/Science.Aag1582 |
0.681 |
|
2016 |
Autour A, Westhof E, Ryckelynck M. iSpinach: a fluorogenic RNA aptamer optimized for in vitro applications. Nucleic Acids Research. 44: 2491-500. PMID 26932363 DOI: 10.1093/Nar/Gkw083 |
0.48 |
|
2015 |
Woronoff G, Ryckelynck M, Wessel J, Schicke O, Griffiths AD, Soumillion P. Activity-Fed Translation (AFT) Assay: A New High-Throughput Screening Strategy for Enzymes in Droplets. Chembiochem : a European Journal of Chemical Biology. 16: 1343-9. PMID 25914325 DOI: 10.1002/Cbic.201500087 |
0.709 |
|
2015 |
Ryckelynck M, Baudrey S, Rick C, Marin A, Coldren F, Westhof E, Griffiths AD. Using droplet-based microfluidics to improve the catalytic properties of RNA under multiple-turnover conditions. Rna (New York, N.Y.). 21: 458-69. PMID 25605963 DOI: 10.1261/Rna.048033.114 |
0.736 |
|
2012 |
Fallah-Araghi A, Baret JC, Ryckelynck M, Griffiths AD. A completely in vitro ultrahigh-throughput droplet-based microfluidic screening system for protein engineering and directed evolution. Lab On a Chip. 12: 882-91. PMID 22277990 DOI: 10.1039/C2Lc21035E |
0.697 |
|
2012 |
Najah M, Griffiths AD, Ryckelynck M. Teaching single-cell digital analysis using droplet-based microfluidics. Analytical Chemistry. 84: 1202-9. PMID 22229495 DOI: 10.1021/Ac202645M |
0.679 |
|
2011 |
Woronoff G, El Harrak A, Mayot E, Schicke O, Miller OJ, Soumillion P, Griffiths AD, Ryckelynck M. New generation of amino coumarin methyl sulfonate-based fluorogenic substrates for amidase assays in droplet-based microfluidic applications. Analytical Chemistry. 83: 2852-7. PMID 21413778 DOI: 10.1021/Ac200373N |
0.7 |
|
2009 |
Mazutis L, Baret JC, Treacy P, Skhiri Y, Araghi AF, Ryckelynck M, Taly V, Griffiths AD. Multi-step microfluidic droplet processing: kinetic analysis of an in vitro translated enzyme. Lab On a Chip. 9: 2902-8. PMID 19789742 DOI: 10.1039/B907753G |
0.703 |
|
2009 |
Baret JC, Taly V, Ryckelynck M, Merten CA, Griffiths AD. [Droplets and emulsions: very high-throughput screening in biology]. Medecine Sciences : M/S. 25: 627-32. PMID 19602361 DOI: 10.1051/Medsci/2009256-7627 |
0.696 |
|
2009 |
Baret JC, Miller OJ, Taly V, Ryckelynck M, El-Harrak A, Frenz L, Rick C, Samuels ML, Hutchison JB, Agresti JJ, Link DR, Weitz DA, Griffiths AD. Fluorescence-activated droplet sorting (FADS): efficient microfluidic cell sorting based on enzymatic activity. Lab On a Chip. 9: 1850-8. PMID 19532959 DOI: 10.1039/B902504A |
0.689 |
|
2009 |
Mazutis L, Araghi AF, Miller OJ, Baret JC, Frenz L, Janoshazi A, Taly V, Miller BJ, Hutchison JB, Link D, Griffiths AD, Ryckelynck M. Droplet-based microfluidic systems for high-throughput single DNA molecule isothermal amplification and analysis. Analytical Chemistry. 81: 4813-21. PMID 19518143 DOI: 10.1021/Ac900403Z |
0.66 |
|
2005 |
Ryckelynck M, Masquida B, Giegé R, Frugier M. An intricate RNA structure with two tRNA-derived motifs directs complex formation between yeast aspartyl-tRNA synthetase and its mRNA. Journal of Molecular Biology. 354: 614-29. PMID 16257416 DOI: 10.1016/J.Jmb.2005.09.063 |
0.558 |
|
2005 |
Frugier M, Ryckelynck M, Giegé R. tRNA-balanced expression of a eukaryal aminoacyl-tRNA synthetase by an mRNA-mediated pathway. Embo Reports. 6: 860-5. PMID 16113655 DOI: 10.1038/Sj.Embor.7400481 |
0.568 |
|
2005 |
Ryckelynck M, Giegé R, Frugier M. tRNAs and tRNA mimics as cornerstones of aminoacyl-tRNA synthetase regulations. Biochimie. 87: 835-45. PMID 15925436 DOI: 10.1016/J.Biochi.2005.02.014 |
0.561 |
|
2003 |
Ryckelynck M, Giegé R, Frugier M. Yeast tRNA(Asp) charging accuracy is threatened by the N-terminal extension of aspartyl-tRNA synthetase. The Journal of Biological Chemistry. 278: 9683-90. PMID 12486031 DOI: 10.1074/Jbc.M211035200 |
0.551 |
|
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