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Suresh Cuddapah - Publications

Affiliations: 
Department of Environmental Medicine New York University, New York, NY, United States 
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31/39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Jose CC, Wang Z, Tanwar VS, Zhang X, Zang C, Cuddapah S. Nickel-induced transcriptional changes persist  post exposure through epigenetic reprogramming. Epigenetics & Chromatin. 12: 75. PMID 31856895 DOI: 10.1186/S13072-019-0324-3  0.582
2019 Tanwar VS, Jose CC, Cuddapah S. Role of CTCF in DNA damage response. Mutation Research. 780: 61-68. PMID 31395350 DOI: 10.1016/J.Mrrev.2018.02.002  0.371
2018 Jose CC, Jagannathan L, Tanwar VS, Zhang X, Zang C, Cuddapah S. Nickel exposure induces persistent mesenchymal phenotype in human lung epithelial cells through epigenetic activation of ZEB1. Molecular Carcinogenesis. PMID 29528143 DOI: 10.1002/Mc.22802  0.521
2017 Jagannathan L, Jose CC, Tanwar VS, Bhattacharya S, Cuddapah S. Identification of a unique gene expression signature in mercury and 2,3,7,8-tetrachlorodibenzo-p-dioxin co-exposed cells. Toxicology Research. 6: 312-323. PMID 29057067 DOI: 10.1039/C6Tx00432F  0.327
2017 Barski A, Cuddapah S, Kartashov AV, Liu C, Imamichi H, Yang W, Peng W, Lane HC, Zhao K. Rapid Recall Ability of Memory T cells is Encoded in their Epigenome. Scientific Reports. 7: 39785. PMID 28054639 DOI: 10.1038/Srep39785  0.691
2016 Jagannathan L, Cuddapah S, Costa M. Oxidative stress under ambient and physiological oxygen tension in tissue culture. Current Pharmacology Reports. 2: 64-72. PMID 27034917 DOI: 10.1007/S40495-016-0050-5  0.303
2016 Crompton JG, Narayanan M, Cuddapah S, Roychoudhuri R, Ji Y, Yang W, Patel SJ, Sukumar M, Palmer DC, Peng W, Wang E, Marincola FM, Klebanoff CA, Zhao K, Tsang JS, et al. Lineage relationship of CD8+ T cell subsets is revealed by progressive changes in the epigenetic landscape Cellular and Molecular Immunology. 13: 502-513. DOI: 10.1038/cmi.2015.32  0.63
2015 Jagannathan L, Jose CC, Arita A, Kluz T, Sun H, Zhang X, Yao Y, Kartashov AV, Barski A, Costa M, Cuddapah S. Nuclear Factor κB1/RelA Mediates Inflammation in Human Lung Epithelial Cells at Atmospheric Oxygen Levels. Journal of Cellular Physiology. PMID 26588041 DOI: 10.1002/Jcp.25262  0.523
2015 Crompton JG, Narayanan M, Cuddapah S, Roychoudhuri R, Ji Y, Yang W, Patel SJ, Sukumar M, Palmer DC, Peng W, Wang E, Marincola FM, Klebanoff CA, Zhao K, Tsang JS, et al. Lineage relationship of CD8(+) T cell subsets is revealed by progressive changes in the epigenetic landscape. Cellular & Molecular Immunology. PMID 25914936 DOI: 10.1038/Cmi.2015.32  0.666
2014 Jose CC, Xu B, Jagannathan L, Trac C, Mallela RK, Hattori T, Lai D, Koide S, Schones DE, Cuddapah S. Epigenetic dysregulation by nickel through repressive chromatin domain disruption. Proceedings of the National Academy of Sciences of the United States of America. 111: 14631-6. PMID 25246589 DOI: 10.1073/Pnas.1406923111  0.739
2014 Lhoumaud P, Hennion M, Gamot A, Cuddapah S, Queille S, Liang J, Micas G, Morillon P, Urbach S, Bouchez O, Severac D, Emberly E, Zhao K, Cuvier O. Insulators recruit histone methyltransferase dMes4 to regulate chromatin of flanking genes. The Embo Journal. 33: 1599-613. PMID 24916307 DOI: 10.15252/Embj.201385965  0.728
2014 Liang J, Lacroix L, Gamot A, Cuddapah S, Queille S, Lhoumaud P, Lepetit P, Martin PG, Vogelmann J, Court F, Hennion M, Micas G, Urbach S, Bouchez O, Nöllmann M, et al. Chromatin immunoprecipitation indirect peaks highlight long-range interactions of insulator proteins and Pol II pausing. Molecular Cell. 53: 672-81. PMID 24486021 DOI: 10.1016/J.Molcel.2013.12.029  0.606
2014 Barski A, Cuddapah S, Kartashov AV, Imamichi H, Yang W, Peng W, Lane H, Zhao K. Epigenetic regulation of gene expression and cellular differentiation Molecular Pain. 10: O20. DOI: 10.1186/1744-8069-10-S1-O20  0.769
2012 Cuddapah S, Roh TY, Cui K, Jose CC, Fuller MT, Zhao K, Chen X. A novel human polycomb binding site acts as a functional polycomb response element in Drosophila. Plos One. 7: e36365. PMID 22570707 DOI: 10.1371/Journal.Pone.0036365  0.752
2012 Freudenberg JM, Ghosh S, Lackford BL, Yellaboina S, Zheng X, Li R, Cuddapah S, Wade PA, Hu G, Jothi R. Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity. Nucleic Acids Research. 40: 3364-77. PMID 22210859 DOI: 10.1093/Nar/Gkr1253  0.382
2011 Schones DE, Cui K, Cuddapah S. Genome-wide approaches to studying yeast chromatin modifications. Methods in Molecular Biology (Clifton, N.J.). 759: 61-71. PMID 21863481 DOI: 10.1007/978-1-61779-173-4_4  0.778
2011 Cuddapah S, Schones DE, Cui K, Roh TY, Barski A, Wei G, Rochman M, Bustin M, Zhao K. Genomic profiling of HMGN1 reveals an association with chromatin at regulatory regions. Molecular and Cellular Biology. 31: 700-9. PMID 21173166 DOI: 10.1128/Mcb.00740-10  0.809
2010 Barski A, Chepelev I, Liko D, Cuddapah S, Fleming AB, Birch J, Cui K, White RJ, Zhao K. Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes. Nature Structural & Molecular Biology. 17: 629-34. PMID 20418881 DOI: 10.1038/Nsmb.1806  0.727
2010 Cuddapah S, Barski A, Zhao K. Epigenomics of T cell activation, differentiation, and memory. Current Opinion in Immunology. 22: 341-7. PMID 20226645 DOI: 10.1016/J.Coi.2010.02.007  0.711
2009 Cuddapah S, Barski A, Cui K, Schones DE, Wang Z, Wei G, Zhao K. Native chromatin preparation and Illumina/Solexa library construction. Cold Spring Harbor Protocols. 2009: pdb.prot5237. PMID 20147195 DOI: 10.1101/Pdb.Prot5237  0.772
2009 Barski A, Jothi R, Cuddapah S, Cui K, Roh TY, Schones DE, Zhao K. Chromatin poises miRNA- and protein-coding genes for expression. Genome Research. 19: 1742-51. PMID 19713549 DOI: 10.1101/Gr.090951.109  0.792
2009 Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, Zhao K. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Research. 19: 24-32. PMID 19056695 DOI: 10.1101/Gr.082800.108  0.789
2008 Jothi R, Cuddapah S, Barski A, Cui K, Zhao K. Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. Nucleic Acids Research. 36: 5221-31. PMID 18684996 DOI: 10.1093/Nar/Gkn488  0.71
2008 Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, Cui K, Roh TY, Peng W, Zhang MQ, Zhao K. Combinatorial patterns of histone acetylations and methylations in the human genome. Nature Genetics. 40: 897-903. PMID 18552846 DOI: 10.1038/Ng.154  0.8
2008 Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K. Dynamic regulation of nucleosome positioning in the human genome. Cell. 132: 887-98. PMID 18329373 DOI: 10.1016/J.Cell.2008.02.022  0.805
2008 Cuddapah S, Cui K, Zhao K. Transcriptional enhancer factor 1 (TEF-1/TEAD1) mediates activation of IFITM3 gene by BRGl Febs Letters. 582: 391-397. PMID 18177740 DOI: 10.1016/J.Febslet.2007.12.033  0.614
2007 Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. High-Resolution Profiling of Histone Methylations in the Human Genome Cell. 129: 823-837. PMID 17512414 DOI: 10.1016/J.Cell.2007.05.009  0.811
2007 Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. Response: Mapping Nucleosome Positions Using ChIP-Seq Data Cell. 131: 832-833. DOI: 10.1016/J.Cell.2007.11.018  0.828
2006 Cuddapah S, Zhao K. Genome-wide mapping of histone modifications by GMAT. Biotechnology & Genetic Engineering Reviews. 23: 93-103. PMID 22530504 DOI: 10.1080/02648725.2006.10648080  0.663
2006 Roh TY, Cuddapah S, Cui K, Zhao K. The genomic landscape of histone modifications in human T cells. Proceedings of the National Academy of Sciences of the United States of America. 103: 15782-7. PMID 17043231 DOI: 10.1073/Pnas.0607617103  0.802
2005 Roh TY, Cuddapah S, Zhao K. Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes & Development. 19: 542-52. PMID 15706033 DOI: 10.1101/Gad.1272505  0.815
Low-probability matches (unlikely to be authored by this person)
2023 Filipovic D, Qi W, Kana O, Marri D, LeCluyse EL, Andersen ME, Cuddapah S, Bhattacharya S. Interpretable predictive models of genome-wide aryl hydrocarbon receptor-DNA binding reveal tissue specific binding determinants. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 37707797 DOI: 10.1093/toxsci/kfad094  0.267
2019 Tanwar VS, Zhang X, Jagannathan L, Jose CC, Cuddapah S. Cadmium exposure upregulates SNAIL through miR-30 repression in human lung epithelial cells. Toxicology and Applied Pharmacology. 373: 1-9. PMID 30998937 DOI: 10.1016/J.Taap.2019.04.011  0.25
2022 Gaspar AD, Cuddapah S. Nickel-induced alterations to chromatin structure and function. Toxicology and Applied Pharmacology. 457: 116317. PMID 36400264 DOI: 10.1016/j.taap.2022.116317  0.234
2021 Zhang X, Tanwar VS, Jose CC, Lee HW, Cuddapah S. Transcriptional repression of E-cadherin in nickel-exposed lung epithelial cells mediated by loss of Sp1 binding at the promoter. Molecular Carcinogenesis. PMID 34727382 DOI: 10.1002/mc.23364  0.215
2023 Zhang X, Bradford B, Baweja S, Tan T, Lee HW, Jose CC, Kim N, Katari M, Cuddapah S. Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon nicotine exposure. Toxicology and Applied Pharmacology. 116753. PMID 37951547 DOI: 10.1016/j.taap.2023.116753  0.186
2022 Kou Z, Yang R, Lee E, Cuddapah S, Choi BH, Dai W. Oxidative stress modulates expression of immune checkpoint genes via activation of AhR signaling. Toxicology and Applied Pharmacology. 457: 116314. PMID 36368423 DOI: 10.1016/j.taap.2022.116314  0.162
2022 Tran F, Lee E, Cuddapah S, Choi BH, Dai W. MicroRNA-Gene Interactions Impacted by Toxic Metal(oid)s during EMT and Carcinogenesis. Cancers. 14. PMID 36497298 DOI: 10.3390/cancers14235818  0.148
2021 Lee HW, Jose CC, Cuddapah S. Epithelial-mesenchymal transition: Insights into nickel-induced lung diseases. Seminars in Cancer Biology. PMID 34058338 DOI: 10.1016/j.semcancer.2021.05.020  0.075
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