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Jayanta Mukhopadhyay - Publications

Affiliations: 
Rutgers University, New Brunswick, New Brunswick, NJ, United States 
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Tewary A, Prajapati RK, Mukhopadhyay J. Mechanism of δ Mediated Transcription Activation in Bacillus subtilis: Interaction with α CTD of RNA Polymerase Stabilizes δ and Successively Facilitates the Open Complex Formation. Journal of Molecular Biology. 435: 168366. PMID 37972688 DOI: 10.1016/j.jmb.2023.168366  0.329
2021 Sharma S, Kumar R, Jain A, Kumar M, Gauttam R, Banerjee R, Mukhopadhyay J, Tyagi JS. Functional insights into Mycobacterium tuberculosis DevR-dependent transcriptional machinery utilizing Escherichia coli. The Biochemical Journal. PMID 34350952 DOI: 10.1042/BCJ20210268  0.321
2020 Mallik R, Prasad P, Kundu A, Sachdev S, Biswas R, Dutta A, Roy A, Mukhopadhyay J, Bag SK, Chaudhuri S. Identification of genome-wide targets and DNA recognition sequence of the Arabidopsis HMG-box protein AtHMGB15 during cold stress response. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194644. PMID 33068782 DOI: 10.1016/j.bbagrm.2020.194644  0.759
2020 Sharma AK, Chatterjee A, Gupta S, Banerjee R, Mandal S, Mukhopadhyay J, Basu J, Kundu M. Corrigendum: MtrA, an essential response regulator of the MtrAB two-component system, regulates the transcription of resuscitation-promoting factor B of . Microbiology (Reading, England). 166: 679. PMID 32736667 DOI: 10.1099/mic.0.000921  0.529
2019 Dutta A, Rudra P, Banik SK, Mukhopadhyay J. Evidence of robustness in a two-component system using a synthetic circuit. Journal of Bacteriology. PMID 31792012 DOI: 10.1128/Jb.00672-19  0.733
2018 Bhawsinghka N, Dutta A, Mukhopadhyay J, Das Gupta SK. A transcriptomic analysis of the mycobacteriophage D29 genome reveals the presence of novel stoperator-associated promoters in its right arm. Microbiology (Reading, England). PMID 30024363 DOI: 10.1099/Mic.0.000693  0.753
2017 Mallick Gupta A, Mukherjee S, Dutta A, Mukhopadhyay J, Bhattacharyya D, Mandal S. Identification of a suitable promoter for the sigma factor of Mycobacterium tuberculosis. Molecular Biosystems. PMID 28952652 DOI: 10.1039/C7Mb00317J  0.632
2016 Datta A, Yadav V, Ghosh A, Choi J, Bhattacharyya D, Kar RK, Ilyas H, Dutta A, An E, Mukhopadhyay J, Lee D, Sanyal K, Ramamoorthy A, Bhunia A. Mode of Action of a Designed Antimicrobial Peptide: High Potency against Cryptococcus neoformans. Biophysical Journal. 111: 1724-1737. PMID 27760359 DOI: 10.1016/J.Bpj.2016.08.032  0.748
2016 Prajapati RK, Sur R, Mukhopadhyay J. A Novel function of δ factor from Bacillus subtilis as a Transcriptional Repressor. The Journal of Biological Chemistry. PMID 27679485 DOI: 10.1074/Jbc.M116.746065  0.439
2016 Roy A, Dutta A, Roy D, Ganguly P, Ghosh R, Kar RK, Bhunia A, Mukhopadhyay J, Chaudhuri S. Erratum to: Deciphering the role of the AT-rich interaction domain and the HMG-box domain of ARID-HMG proteins of Arabidopsis thaliana. Plant Molecular Biology. PMID 27596368 DOI: 10.1007/s11103-016-0534-z  0.731
2015 Prajapati RK, Sengupta S, Rudra P, Mukhopadhyay J. Bacillus subtilis δ functions as a transcriptional regulator by facilitating the open complex formation. The Journal of Biological Chemistry. PMID 26546673 DOI: 10.1074/Jbc.M115.686170  0.497
2015 Sengupta S, Prajapati RK, Mukhopadhyay J. Promoter escape with bacterial two-component sigma factor suggests retention of sigma region two in the elongation complex. The Journal of Biological Chemistry. PMID 26400263 DOI: 10.1074/Jbc.M115.666008  0.435
2015 Rudra P, Prajapati RK, Banerjee R, Sengupta S, Mukhopadhyay J. Novel mechanism of gene regulation: the protein Rv1222 of Mycobacterium tuberculosis inhibits transcription by anchoring the RNA polymerase onto DNA. Nucleic Acids Research. 43: 5855-67. PMID 25999340 DOI: 10.1093/Nar/Gkv516  0.456
2015 Sharma AK, Chatterjee A, Gupta S, Banerjee R, Mandal S, Mukhopadhyay J, Basu J, Kundu M. MtrA, an essential response regulator of the MtrAB two component system regulates the transcription of resuscitation promoting factor B (RpfB) of Mycobacterium tuberculosis. Microbiology (Reading, England). PMID 25833257 DOI: 10.1099/Mic.0.000087  0.642
2015 Saha A, Mukhopadhyay J, Datta AB, Parrack P. Revisiting the mechanism of activation of cyclic AMP receptor protein (CRP) by cAMP in Escherichia coli: lessons from a subunit-crosslinked form of CRP. Febs Letters. 589: 358-63. PMID 25541491 DOI: 10.1016/J.Febslet.2014.12.021  0.356
2015 Banerjee R, Rudra P, Saha A, Mukhopadhyay J. Recombinant reporter assay using transcriptional machinery of Mycobacterium tuberculosis. Journal of Bacteriology. 197: 646-53. PMID 25448818 DOI: 10.1128/Jb.02445-14  0.39
2014 Banerjee R, Rudra P, Prajapati RK, Sengupta S, Mukhopadhyay J. Optimization of recombinant Mycobacterium tuberculosis RNA polymerase expression and purification. Tuberculosis (Edinburgh, Scotland). 94: 397-404. PMID 24832563 DOI: 10.1016/J.Tube.2014.03.008  0.354
2013 Sanyal S, Banerjee SK, Banerjee R, Mukhopadhyay J, Kundu M. Polyphosphate kinase 1, a central node in the stress response network of Mycobacterium tuberculosis, connects the two-component systems MprAB and SenX3-RegX3 and the extracytoplasmic function sigma factor, sigma E Microbiology (United Kingdom). 159: 2074-2086. PMID 23946493 DOI: 10.1099/Mic.0.068452-0  0.378
2011 Srivastava A, Talaue M, Liu S, Degen D, Ebright RY, Sineva E, Chakraborty A, Druzhinin SY, Chatterjee S, Mukhopadhyay J, Ebright YW, Zozula A, Shen J, Sengupta S, Niedfeldt RR, et al. New target for inhibition of bacterial RNA polymerase: 'switch region'. Current Opinion in Microbiology. 14: 532-43. PMID 21862392 DOI: 10.1016/J.Mib.2011.07.030  0.695
2008 Mukhopadhyay J, Das K, Ismail S, Koppstein D, Jang M, Hudson B, Sarafianos S, Tuske S, Patel J, Jansen R, Irschik H, Arnold E, Ebright RH. The RNA polymerase "switch region" is a target for inhibitors. Cell. 135: 295-307. PMID 18957204 DOI: 10.1016/J.Cell.2008.09.033  0.658
2008 Pavlova O, Mukhopadhyay J, Sineva E, Ebright RH, Severinov K. Systematic structure-activity analysis of microcin J25. The Journal of Biological Chemistry. 283: 25589-95. PMID 18632663 DOI: 10.1074/Jbc.M803995200  0.785
2006 Margeat E, Kapanidis AN, Tinnefeld P, Wang Y, Mukhopadhyay J, Ebright RH, Weiss S. Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes. Biophysical Journal. 90: 1419-31. PMID 16299085 DOI: 10.1529/Biophysj.105.069252  0.727
2005 Kapanidis AN, Margeat E, Laurence TA, Doose S, Ho SO, Mukhopadhyay J, Kortkhonjia E, Mekler V, Ebright RH, Weiss S. Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis. Molecular Cell. 20: 347-56. PMID 16285917 DOI: 10.1016/J.Molcel.2005.10.012  0.753
2005 Tuske S, Sarafianos SG, Wang X, Hudson B, Sineva E, Mukhopadhyay J, Birktoft JJ, Leroy O, Ismail S, Clark AD, Dharia C, Napoli A, Laptenko O, Lee J, Borukhov S, et al. Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation. Cell. 122: 541-52. PMID 16122422 DOI: 10.1016/J.Cell.2005.07.017  0.793
2005 Lee NK, Kapanidis AN, Wang Y, Michalet X, Mukhopadhyay J, Ebright RH, Weiss S. Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation. Biophysical Journal. 88: 2939-53. PMID 15653725 DOI: 10.1529/Biophysj.104.054114  0.681
2005 Knight JL, Mekler V, Mukhopadhyay J, Ebright RH, Levy RM. Distance-restrained docking of rifampicin and rifamycin SV to RNA polymerase using systematic FRET measurements: developing benchmarks of model quality and reliability. Biophysical Journal. 88: 925-38. PMID 15542547 DOI: 10.1529/Biophysj.104.050187  0.606
2004 Mukhopadhyay J, Sineva E, Knight J, Levy RM, Ebright RH. Antibacterial peptide microcin J25 inhibits transcription by binding within and obstructing the RNA polymerase secondary channel. Molecular Cell. 14: 739-51. PMID 15200952 DOI: 10.1016/J.Molcel.2004.06.010  0.774
2004 Nickels BE, Mukhopadhyay J, Garrity SJ, Ebright RH, Hochschild A. The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter. Nature Structural & Molecular Biology. 11: 544-50. PMID 15122345 DOI: 10.1038/Nsmb757  0.626
2003 Mukhopadhyay J, Mekler V, Kortkhonjia E, Kapanidis AN, Ebright YW, Ebright RH. Fluorescence resonance energy transfer (FRET) in analysis of transcription-complex structure and function. Methods in Enzymology. 371: 144-59. PMID 14712697 DOI: 10.1016/S0076-6879(03)71010-6  0.758
2003 Bayro MJ, Mukhopadhyay J, Swapna GV, Huang JY, Ma LC, Sineva E, Dawson PE, Montelione GT, Ebright RH. Structure of antibacterial peptide microcin J25: a 21-residue lariat protoknot. Journal of the American Chemical Society. 125: 12382-3. PMID 14531661 DOI: 10.1021/Ja036677E  0.771
2002 Mekler V, Kortkhonjia E, Mukhopadhyay J, Knight J, Revyakin A, Kapanidis AN, Niu W, Ebright YW, Levy R, Ebright RH. Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex. Cell. 108: 599-614. PMID 11893332 DOI: 10.1016/S0092-8674(02)00667-0  0.774
2001 Mukhopadhyay J, Kapanidis AN, Mekler V, Kortkhonjia E, Ebright YW, Ebright RH. Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA. Cell. 106: 453-63. PMID 11525731 DOI: 10.1016/S0092-8674(01)00464-0  0.773
2001 Sur R, Debnath D, Mukhopadhyay J, Parrack P. A novel RNA polymerase binding site upstream of the galactose promoter in Escherichia coli exhibits promoter-like activity European Journal of Biochemistry. 268: 2344-2350. PMID 11298753 DOI: 10.1046/J.1432-1327.2001.02114.X  0.404
1999 Mukhopadhyay J, Sur R, Parrack P. Functional roles of the two cyclic AMP-dependent forms of cyclic AMP receptor protein from Escherichia coli Febs Letters. 453: 215-218. PMID 10403406 DOI: 10.1016/S0014-5793(99)00719-X  0.308
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