Konstantin Zeldovich - Publications

Affiliations: 
1998-2001 Physics Department Lomonosov Moscow State University 
 2008- University of Massachusetts Medical School, Worcester, MA, United States 
Website:
https://profiles.umassmed.edu/display/129966

6/39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Canale AS, Venev SV, Whitfield TW, Caffrey DR, Marasco WA, Schiffer CA, Kowalik TF, Jensen JD, Finberg RW, Zeldovich KB, Wang JP, Bolon DNA. Synonymous mutations at the beginning of the influenza A virus hemagglutinin gene impact experimental fitness. Journal of Molecular Biology. PMID 29466705 DOI: 10.1016/J.Jmb.2018.02.009  0.4
2018 Venev SV, Zeldovich KB. Thermophilic Adaptation in Prokaryotes Is Constrained by Metabolic Costs of Proteostasis. Molecular Biology and Evolution. 35: 211-224. PMID 29106597 DOI: 10.1093/molbev/msx282  0.4
2017 Chan YH, Venev SV, Zeldovich KB, Matthews CR. Correlation of fitness landscapes from three orthologous TIM barrels originates from sequence and structure constraints. Nature Communications. 8: 14614. PMID 28262665 DOI: 10.1038/Ncomms14614  0.4
2015 Venev SV, Zeldovich KB. Massively parallel sampling of lattice proteins reveals foundations of thermal adaptation. The Journal of Chemical Physics. 143: 055101. PMID 26254668 DOI: 10.1063/1.4927565  0.4
2015 Zeldovich KB, Liu P, Renzette N, Foll M, Pham ST, Venev SV, Gallagher GR, Bolon DN, Kurt-Jones EA, Jensen JD, Caffrey DR, Schiffer CA, Kowalik TF, Wang JP, Finberg RW. Positive Selection Drives Preferred Segment Combinations during Influenza Virus Reassortment. Molecular Biology and Evolution. 32: 1519-32. PMID 25713211 DOI: 10.1093/Molbev/Msv044  0.4
2013 Venev SV, Zeldovich KB. Segment self-repulsion is the major driving force of influenza genome packaging. Physical Review Letters. 110: 098104. PMID 23496749 DOI: 10.1103/PhysRevLett.110.098104  0.4
Low-probability matches
2003 Govorun EN, Zeldovich KB, Khokhlov AR. Structure of Charged Poly(propylene imine) Dendrimers: Theoretical Investigation Macromolecular Theory and Simulations. 12: 705-713. DOI: 10.1002/Mats.200350030  0.12
2020 Chan YH, Zeldovich KB, Matthews CR. An allosteric pathway explains beneficial fitness in yeast for long-range mutations in an essential TIM barrel enzyme. Protein Science : a Publication of the Protein Society. PMID 32643222 DOI: 10.1002/pro.3911  0.08
2019 Whitfield TW, Ragland DA, Zeldovich KB, Schiffer CA. Characterizing protein-ligand binding using atomistic simulation and machine learning: Application to drug resistance in HIV-1 protease. Journal of Chemical Theory and Computation. PMID 31877249 DOI: 10.1021/Acs.Jctc.9B00781  0.04
2019 Boucher JI, Whitfield TW, Dauphin A, Nachum G, Hollins C, Zeldovich KB, Swanstrom R, Schiffer CA, Luban J, Bolon DNA. Constrained mutational sampling of amino acids in HIV-1 protease evolution. Molecular Biology and Evolution. PMID 30721995 DOI: 10.1093/Molbev/Msz022  0.04
2018 Prachanronarong KL, Canale AS, Liu P, Somasundaran M, Hou S, Poh YP, Han T, Zhu Q, Renzette N, Zeldovich KB, Kowalik TF, Kurt-Yilmaz N, Jensen JD, Bolon DNA, Marasco WA, et al. Mutations in influenza A virus neuraminidase and hemagglutinin confer resistance against a broadly neutralizing hemagglutinin stem antibody. Journal of Virology. PMID 30381484 DOI: 10.1128/Jvi.01639-18  0.04
2017 Ragland DA, Whitfield TW, Lee SK, Swanstrom R, Zeldovich KB, Kurt Yilmaz N, Schiffer CA. Elucidating the Interdependence of Drug Resistance from Combinations of Mutations. Journal of Chemical Theory and Computation. PMID 28915040 DOI: 10.1021/Acs.Jctc.7B00601  0.04
2017 Ormond L, Liu P, Matuszewski S, Renzette N, Bank C, Zeldovich K, Bolon DN, Kowalik TF, Finberg RW, Jensen JD, Wang JP. The Combined Effect of Oseltamivir and Favipiravir on Influenza A Virus Evolution. Genome Biology and Evolution. 9: 1913-1924. PMID 28854600 DOI: 10.1093/Gbe/Evx138  0.04
2016 Prachanronarong KL, Özen A, Thayer KM, Yilmaz LS, Zeldovich KB, Bolon DN, Kowalik TF, Jensen JD, Finberg RW, Wang JP, Kurt-Yilmaz N, Schiffer CA. Molecular Basis for Differential Patterns of Drug Resistance in Influenza N1 and N2 Neuraminidase. Journal of Chemical Theory and Computation. 12: 6098-6108. PMID 27951676 DOI: 10.1021/Acs.Jctc.6B00703  0.04
2016 Bank C, Renzette N, Liu P, Matuszewski S, Shim H, Foll M, Bolon DN, Zeldovich KB, Kowalik TF, Finberg RW, Wang JP, Jensen JD. An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy. Evolution; International Journal of Organic Evolution. PMID 27566611 DOI: 10.1111/Evo.13041  0.04
2015 Jiang L, Liu P, Bank C, Renzette N, Prachanronarong K, Yilmaz LS, Caffrey DR, Zeldovich KB, Schiffer CA, Kowalik TF, Jensen JD, Finberg RW, Wang JP, Bolon DN. A balance between inhibitor binding and substrate processing confers influenza drug resistance. Journal of Molecular Biology. PMID 26656922 DOI: 10.1016/J.Jmb.2015.11.027  0.04
2014 Foll M, Poh YP, Renzette N, Ferrer-Admetlla A, Bank C, Shim H, Malaspinas AS, Ewing G, Liu P, Wegmann D, Caffrey DR, Zeldovich KB, Bolon DN, Wang JP, Kowalik TF, et al. Influenza virus drug resistance: a time-sampled population genetics perspective. Plos Genetics. 10: e1004185. PMID 24586206 DOI: 10.1371/Journal.Pgen.1004185  0.04
2014 Renzette N, Caffrey DR, Zeldovich KB, Liu P, Gallagher GR, Aiello D, Porter AJ, Kurt-Jones EA, Bolon DN, Poh YP, Jensen JD, Schiffer CA, Kowalik TF, Finberg RW, Wang JP. Evolution of the influenza A virus genome during development of oseltamivir resistance in vitro. Journal of Virology. 88: 272-81. PMID 24155392 DOI: 10.1128/Jvi.01067-13  0.04
1999 Zeldovich KB, Khokhlov AR. Osmotically Active and Passive Counterions in Inhomogeneous Polymer Gels Macromolecules. 32: 3488-3494. DOI: 10.1021/Ma9815298  0.04
1997 Zeldovich KB, Dormidontova EE, Khokhlov AR, Vilgis TA. Microphase Separation Transition for Polyelectrolyte Gels in Poor Solvents Journal De Physique Ii. 7: 627-635. DOI: 10.1051/Jp2:1997147  0.04
2020 Cote-Hammarlof PA, Fragata I, Flynn J, Mavor D, Zeldovich KB, Bank C, Bolon DNA. The adaptive potential of the middle domain of yeast Hsp90. Molecular Biology and Evolution. PMID 32871012 DOI: 10.1093/molbev/msaa211  0.01
2013 Jiang L, Mishra P, Hietpas RT, Zeldovich KB, Bolon DNA. Latent Effects of Hsp90 Mutants Revealed at Reduced Expression Levels Plos Genetics. 9. PMID 23825969 DOI: 10.1371/journal.pgen.1003600  0.01
2013 Roscoe BP, Thayer KM, Zeldovich KB, Fushman D, Bolon DNA. Analyses of the effects of all ubiquitin point mutants on yeast growth rate Journal of Molecular Biology. 425: 1363-1377. PMID 23376099 DOI: 10.1016/J.Jmb.2013.01.032  0.01
2012 Lowe Jr. EW. Recent technological advancements in ligand-based and structure-based modeling: BCL: Cheminfo and rosetta ligand Drug Designing: Open Access. 1. DOI: 10.4172/2169-0138.S1.002  0.01
2012 Renzette N, Lui P, Caffrey D, Zeldovich K, Wang J, Finberg R, Kowalik T. In vitro culture of influenza A alters the evolutionary trajectories of viral populations International Journal of Infectious Diseases. 16: e105. DOI: 10.1016/J.Ijid.2012.05.243  0.01
2011 Heo M, Zeldovich KB, Shakhnovich EI. Diversity Against Adversity: How Adaptive Immune System Evolves Potent Antibodies Journal of Statistical Physics. 144: 241-267. DOI: 10.1007/S10955-011-0241-8  0.01
2008 Zeldovich KB, Shakhnovich EI. Understanding protein evolution: from protein physics to Darwinian selection. Annual Review of Physical Chemistry. 59: 105-27. PMID 17937598 DOI: 10.1146/Annurev.Physchem.58.032806.104449  0.01
2007 Zeldovich KB, Chen P, Shakhnovich EI. Protein stability imposes limits on organism complexity and speed of molecular evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 16152-7. PMID 17913881 DOI: 10.1073/Pnas.0705366104  0.01
2007 Zeldovich KB, Chen P, Shakhnovich BE, Shakhnovich EI. A first-principles model of early evolution: emergence of gene families, species, and preferred protein folds. Plos Computational Biology. 3: e139. PMID 17630830 DOI: 10.1371/Journal.Pcbi.0030139  0.01
2007 Berezovsky IN, Zeldovich KB, Shakhnovich EI. Positive and negative design in stability and thermal adaptation of natural proteins. Plos Computational Biology. 3: e52. PMID 17381236 DOI: 10.1371/Journal.Pcbi.0030052  0.01
2007 Wallin S, Zeldovich KB, Shakhnovich EI. The folding mechanics of a knotted protein. Journal of Molecular Biology. 368: 884-93. PMID 17368671 DOI: 10.1016/J.Jmb.2007.02.035  0.01
2007 Zeldovich KB, Berezovsky IN, Shakhnovich EI. Protein and DNA sequence determinants of thermophilic adaptation. Plos Computational Biology. 3: e5. PMID 17222055 DOI: 10.1371/Journal.Pcbi.0030005  0.01
2006 Lukatsky DB, Zeldovich KB, Shakhnovich EI. Statistically enhanced self-attraction of random patterns. Physical Review Letters. 97: 178101. PMID 17155509 DOI: 10.1103/Physrevlett.97.178101  0.01
2006 Campàs O, Kafri Y, Zeldovich KB, Casademunt J, Joanny JF. Collective dynamics of interacting molecular motors. Physical Review Letters. 97: 038101. PMID 16907545 DOI: 10.1103/PHYSREVLETT.97.038101  0.01
2006 Zeldovich KB, Berezovsky IN, Shakhnovich EI. Physical origins of protein superfamilies. Journal of Molecular Biology. 357: 1335-43. PMID 16483605 DOI: 10.1016/J.Jmb.2006.01.081  0.01
2005 Zeldovich KB, Joanny JF, Prost J. Motor proteins transporting cargos. The European Physical Journal. E, Soft Matter. 17: 155-63. PMID 15880289 DOI: 10.1140/Epje/I2004-10137-6  0.01
2005 Minc N, Bokov P, Zeldovich KB, Fütterer C, Viovy JL, Dorfman KD. Motion of single long DNA molecules through arrays of magnetic columns. Electrophoresis. 26: 362-75. PMID 15657884 DOI: 10.1002/Elps.200410115  0.01
2004 Leduc C, Campàs O, Zeldovich KB, Roux A, Jolimaitre P, Bourel-Bonnet L, Goud B, Joanny JF, Bassereau P, Prost J. Cooperative extraction of membrane nanotubes by molecular motors. Proceedings of the National Academy of Sciences of the United States of America. 101: 17096-101. PMID 15569933 DOI: 10.1073/Pnas.0406598101  0.01
1997 Khokhlov AR, Makhaeva EE, Zeldovich KB. Interplay of ionic and nonionic interactions in weakly charged polyelectrolytes Macromolecular Symposia. 117: 89-98. DOI: 10.1002/Masy.19971170113  0.01
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