Erik Aurell, Ph.D. - Publications

Affiliations: 
Computational Biology Royal Institute of Technology, Stockholm, Stockholms län, Sweden 
Area:
Statistical physics, Mathematical physics, Computational biology

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Aurell E, Kawai R, Goyal K. An operator derivation of the Feynman–Vernon theory, with applications to the generating function of bath energy changes and to an-harmonic baths Journal of Physics a: Mathematical and Theoretical. 53: 275303. DOI: 10.1088/1751-8121/Ab9274  0.302
2020 Zeng H, Aurell E. Inverse Ising techniques to infer underlying mechanisms from data Chinese Physics B. 29: 80201. DOI: 10.1088/1674-1056/Ab8Da6  0.324
2019 Aurell E, Domínguez E, Machado D, Mulet R. Theory of Nonequilibrium Local Search on Random Satisfaction Problems. Physical Review Letters. 123: 230602. PMID 31868433 DOI: 10.1103/Physrevlett.123.230602  0.326
2017 Aurell E, Bo S. Steady diffusion in a drift field: A comparison of large-deviation techniques and multiple-scale analysis. Physical Review. E. 96: 032140. PMID 29347012 DOI: 10.1103/Physreve.96.032140  0.312
2017 Aurell E, Del Ferraro G, Domínguez E, Mulet R. Cavity master equation for the continuous time dynamics of discrete-spin models. Physical Review. E. 95: 052119. PMID 28618512 DOI: 10.1103/Physreve.95.052119  0.333
2017 Skwark MJ, Croucher NJ, Puranen S, Chewapreecha C, Pesonen M, Xu YY, Turner P, Harris SR, Beres SB, Musser JM, Parkhill J, Bentley SD, Aurell E, Corander J. Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis. Plos Genetics. 13: e1006508. PMID 28207813 DOI: 10.1371/Journal.Pgen.1006508  0.687
2017 Aurell E. On Work and Heat in Time-Dependent Strong Coupling Entropy. 19: 595. DOI: 10.3390/E19110595  0.304
2016 Aurell E. The Maximum Entropy Fallacy Redux? Plos Computational Biology. 12: e1004777. PMID 27171259 DOI: 10.1371/Journal.Pcbi.1004777  0.317
2016 Aurell E, Ferraro GD. Causal analysis, Correlation-Response, and Dynamic cavity Journal of Physics: Conference Series. 699. DOI: 10.1088/1742-6596/699/1/012002  0.308
2016 Ferraro GD, Wang C, Zhou H, Aurell E. On one-step replica symmetry breaking in the Edwards–Anderson spin glass model Journal of Statistical Mechanics: Theory and Experiment. 2016: 073305. DOI: 10.1088/1742-5468/2016/07/073305  0.317
2015 Del Ferraro G, Aurell E. Dynamic message-passing approach for kinetic spin models with reversible dynamics. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 010102. PMID 26274101 DOI: 10.1103/Physreve.92.010102  0.32
2014 Feinauer C, Skwark MJ, Pagnani A, Aurell E. Improving contact prediction along three dimensions. Plos Computational Biology. 10: e1003847. PMID 25299132 DOI: 10.1371/Journal.Pcbi.1003847  0.703
2014 Ferraro GD, Aurell E. Perturbative large deviation analysis of non-equilibrium dynamics Journal of the Physical Society of Japan. 83. DOI: 10.7566/Jpsj.83.084001  0.33
2014 Feinauer C, Skwark MJ, Pagnani A, Aurell E. Improving Contact Prediction along Three Dimensions Plos Computational Biology. 10. DOI: 10.1371/journal.pcbi.1003847  0.654
2013 Ekeberg M, Lövkvist C, Lan Y, Weigt M, Aurell E. Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 012707. PMID 23410359 DOI: 10.1103/Physreve.87.012707  0.312
2013 Bo S, Aurell E, Eichhorn R, Celani A. Optimal stochastic transport in inhomogeneous thermal environments Epl. 103. DOI: 10.1209/0295-5075/103/10010  0.307
2012 Zhou JX, Aliyu DSM, Aurell E, Huang S. Quasi-potential landscape in complex multi-stable systems Journal of the Royal Society Interface. 9: 3539-3553. PMID 22933187 DOI: 10.1098/Rsif.2012.0434  0.311
2011 Zeng HL, Aurell E, Alava M, Mahmoudi H. Network inference using asynchronously updated kinetic Ising model. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 041135. PMID 21599143 DOI: 10.1103/Physreve.83.041135  0.301
2011 Aurell E, Mahmoudi H. Three lemmas on dynamic cavity method Communications in Theoretical Physics. 56: 157-162. DOI: 10.1088/0253-6102/56/1/27  0.32
2010 Hertz JA, Roudi Y, Thorning A, Tyrcha J, Aurell E, Zeng H. Inferring network connectivity using kinetic Ising models Bmc Neuroscience. 11. DOI: 10.1186/1471-2202-11-S1-P51  0.308
2009 Aurell E, Pfitzner R. Gaussian belief with dynamic data and in dynamic network Epl. 87. DOI: 10.1209/0295-5075/87/68004  0.33
2008 Krishnamurthy S, El-Ansary S, Aurell E, Haridi S. An analytical study of a structured overlay in the presence of dynamic membership Ieee/Acm Transactions On Networking. 16: 814-825. DOI: 10.1109/Tnet.2007.905590  0.312
2007 Werner M, Zhu L, Aurell E. Cooperative action in eukaryotic gene regulation: physical properties of a viral example. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 061909. PMID 18233871 DOI: 10.1103/Physreve.76.061909  0.585
2007 Aurell E, D'Hérouël AF, Malmnäs C, Vergassola M. Transcription factor concentrations versus binding site affinities in the yeast S. cerevisiae Physical Biology. 4: 134-143. PMID 17664657 DOI: 10.1088/1478-3975/4/2/006  0.556
2005 Frisch U, Bec J, Aurell E. "Locally homogeneous turbulence": Is it an inconsistent framework? Physics of Fluids. 17: 1-4. DOI: 10.1063/1.2008994  0.731
2004 Lacorata G, Aurell E, Legras B, Vulpiani A. Evidence for a k-5/3 spectrum from the EOLE Lagrangian balloons in the low stratosphere Journal of the Atmospheric Sciences. 61: 2936-2942. DOI: 10.1175/Jas-3292.1  0.318
2003 Fanelli D, Aurell E, Noullez A. Heap-based algorithm and one-dimensional expanding Universe Symposium - International Astronomical Union. 208: 389-390. DOI: 10.1017/S0074180900207407  0.461
2003 Noullez A, Fanelli D, Aurell E. A heap-based algorithm for the study of one-dimensional particle systems Journal of Computational Physics. 186: 697-703. DOI: 10.1016/S0021-9991(03)00048-2  0.492
2003 Aurell E, Fanelli D, Gurbatov SN, Moshkov AY. The inner structure of Zeldovich pancakes Physica D: Nonlinear Phenomena. 186: 171-184. DOI: 10.1016/J.Physd.2003.07.004  0.57
2002 Fanelli D, Aurell E. Asymptotic behavior of a planar perturbation in a three dimensional expanding Universe Astronomy and Astrophysics. 395: 399-408. DOI: 10.1051/0004-6361:20021197  0.57
2001 Lacorata G, Aurell E, Vulpiani A. Drifter dispersion in the Adriatic Sea: Lagrangian data and chaotic model Annales Geophysicae. 19: 121-129. DOI: 10.5194/Angeo-19-121-2001  0.375
2001 Aurell E, Fanelli D, Muratore-Ginanneschi P. On the dynamics of a self-gravitating medium with random and non-random initial conditions Physica D: Nonlinear Phenomena. 148: 272-288. DOI: 10.1016/S0167-2789(00)00182-2  0.527
1997 Aurell E, Boffetta G, Crisanti A, Paladin G, Vulpiani A. Predictability in the large: An extension of the concept of Lyapunov exponent Journal of Physics a: Mathematical and General. 30: 1-26. DOI: 10.1088/0305-4470/30/1/003  0.354
1997 Gurbatov SN, Simdyankin SI, Aurell E, Frisch U, Tóth G. On the decay of Burgers turbulence Journal of Fluid Mechanics. 344: 339-374. DOI: 10.1017/S0022112097006241  0.583
1997 Aurell E, Frisch U, Noullez A, Blank M. Bifractality of the Devil's staircase appearing in the burgers equation with Brownian initial velocity Journal of Statistical Physics. 88: 1151-1164. DOI: 10.1007/Bf02732429  0.58
1996 Aurell E, Boffetta G, Crisanti A, Paladin G, Vulpiani A. Growth of Noninfinitesimal Perturbations in Turbulence. Physical Review Letters. 77: 1262-1265. PMID 10063032 DOI: 10.1103/Physrevlett.77.1262  0.361
1996 Aurell E, Boffetta G, Crisanti A, Paladin G, Vulpiani A. Predictability in systems with many characteristic times: The case of turbulence. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 53: 2337-2349. PMID 9964518 DOI: 10.1103/Physreve.53.2337  0.356
1995 Aurell E, Wertgeim II. Spectral properties of inviscid solutions of the Burgers equation with random initial conditions Radiophysics and Quantum Electronics. 38: 147-150. DOI: 10.1007/Bf01037888  0.31
1994 Aurell E, Frick P, Shaidurov V. Hierarchical tree-model of 2D-turbulence Physica D: Nonlinear Phenomena. 72: 95-109. DOI: 10.1016/0167-2789(94)90169-4  0.332
1993 Aurell E, Gurbatov SN, Wertgeim II. Self-preservation of large-scale structures in Burgers' turbulence Physics Letters A. 182: 109-113. DOI: 10.1016/0375-9601(93)90062-5  0.326
1992 Aurell E, Frisch U, Lutsko J, Vergassola M. On the multifractal properties of the energy dissipation derived from turbulence data Journal of Fluid Mechanics. 238: 467-486. DOI: 10.1017/S0022112092001782  0.704
1992 She ZS, Aurell E, Frisch U. The inviscid Burgers equation with initial data of Brownian type Communications in Mathematical Physics. 148: 623-641. DOI: 10.1007/Bf02096551  0.706
1990 Artuso R, Aurell E, Cvitanovic P. Recycling of strange sets: II. Applications Nonlinearity. 3: 361-386. DOI: 10.1088/0951-7715/3/2/006  0.604
1990 Artuso R, Aurell E, Cvitanovic P. Recycling of strange sets: I. Cycle expansions Nonlinearity. 3: 325-359. DOI: 10.1088/0951-7715/3/2/005  0.605
1988 Aurell E, Itzykson C. Rational billiards and algebraic curves Journal of Geometry and Physics. 5: 191-208. DOI: 10.1016/0393-0440(88)90004-6  0.517
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