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Matthew Bendall - Publications

Affiliations: 
2014-2019 Weill Cornell Medical School 
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Reyes-Gopar H, Marston JL, Singh B, Greenig M, Lin J, Ostrowski MA, Randall KN, Sandoval-Motta S, Dopkins N, Lawrence E, O'Mara MM, Fei T, Duarte RRR, Powell TR, Hernandez-Lemus E, ... ... Bendall ML, et al. A single-cell transposable element atlas of human cell identity. Biorxiv : the Preprint Server For Biology. PMID 38234829 DOI: 10.1101/2023.12.28.573568  0.353
2023 Kanholm T, Rentia U, Hadley M, Karlow JA, Cox OL, Diab N, Bendall ML, Dawson T, McDonald JI, Xie W, Crandall KA, Burns KH, Baylin SB, Easwaran H, Chiappinelli KB. Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation of Transposable Element Loci. Cancer Research. PMID 37249603 DOI: 10.1158/0008-5472.CAN-22-3485  0.474
2022 Dopkins N, O'Mara MM, Lawrence E, Fei T, Sandoval-Motta S, Nixon DF, Bendall ML. A field guide to endogenous retrovirus regulatory networks. Molecular Cell. 82: 3763-3768. PMID 36270247 DOI: 10.1016/j.molcel.2022.09.011  0.317
2021 Stearrett N, Dawson T, Rahnavard A, Bachali P, Bendall ML, Zeng C, Caricchio R, Pérez-Losada M, Grammer AC, Lipsky PE, Crandall KA. Expression of Human Endogenous Retroviruses in Systemic Lupus Erythematosus: Multiomic Integration With Gene Expression. Frontiers in Immunology. 12: 661437. PMID 33986751 DOI: 10.3389/fimmu.2021.661437  0.503
2021 Steiner MC, Marston JL, Iñiguez LP, Bendall ML, Chiappinelli KB, Nixon DF, Crandall KA. Locus-specific characterization of human endogenous retrovirus expression in prostate, breast, and colon cancers. Cancer Research. PMID 33941616 DOI: 10.1158/0008-5472.CAN-20-3975  0.445
2020 Bendall ML, Gibson KM, Steiner MC, Rentia U, Pérez-Losada M, Crandall KA. HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intra-Host Viral Populations. Molecular Biology and Evolution. PMID 33367849 DOI: 10.1093/molbev/msaa315  0.692
2020 Kolbe AR, Bendall ML, Pearson AT, Paul D, Nixon DF, Pérez-Losada M, Crandall KA. Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival. Viruses. 12. PMID 32872377 DOI: 10.3390/V12090956  0.487
2020 Gibson KM, Steiner MC, Rentia U, Bendall ML, Pérez-Losada M, Crandall KA. Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses. Viruses. 12. PMID 32674515 DOI: 10.3390/V12070758  0.689
2020 Gibson KM, Jair K, Castel AD, Bendall ML, Wilbourn B, Jordan JA, Crandall KA, Pérez-Losada M. Author Correction: A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing. Scientific Reports. 10: 7099. PMID 32317740 DOI: 10.1038/S41598-020-63859-Y  0.621
2020 Eliseev A, Gibson KM, Avdeyev P, Novik D, Bendall ML, Pérez-Losada M, Alexeev N, Crandall KA. Evaluation of haplotype callers for next-generation sequencing of viruses. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 104277. PMID 32151775 DOI: 10.1016/J.Meegid.2020.104277  0.67
2020 Gibson KM, Jair K, Castel AD, Bendall ML, Wilbourn B, Jordan JA, Crandall KA, Pérez-Losada M. A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing. Scientific Reports. 10: 1989. PMID 32029767 DOI: 10.1038/S41598-020-58410-Y  0.634
2019 Iñiguez LP, de Mulder Rougvie M, Stearrett N, Jones RB, Ormsby CE, Reyes-Terán G, Crandall KA, Nixon DF, Bendall ML. Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus. Proceedings of the National Academy of Sciences of the United States of America. PMID 31594853 DOI: 10.1073/Pnas.1907705116  0.615
2019 Bendall ML, de Mulder M, Iñiguez LP, Lecanda-Sánchez A, Pérez-Losada M, Ostrowski MA, Jones RB, Mulder LCF, Reyes-Terán G, Crandall KA, Ormsby CE, Nixon DF. Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression. Plos Computational Biology. 15: e1006453. PMID 31568525 DOI: 10.1371/Journal.Pcbi.1006453  0.558
2019 Shanmugam VK, Jones D, McNish S, Bendall ML, Crandall KA. Transcriptome Patterns in Hidradenitis Suppurativa: Support for the Role of Antimicrobial Peptides and Interferon Pathways in Disease Pathogenesis. Clinical and Experimental Dermatology. PMID 30828847 DOI: 10.1111/Ced.13959  0.375
2019 de Mulder Rougvie M, Beckerle G, Bendall M, Iniguez L, Nixon D. Human endogenous retrovirus expression landscape in models of HIV-1 latency Journal of Virus Eradication. 5: 13-14. DOI: 10.1016/S2055-6640(20)31046-3  0.303
2018 Hahn A, Bendall ML, Gibson KM, Chaney H, Sami I, Perez GF, Koumbourlis AC, McCaffrey TA, Freishtat RJ, Crandall KA. Benchmark Evaluation of True Single Molecular Sequencing to Determine Cystic Fibrosis Airway Microbiome Diversity. Frontiers in Microbiology. 9: 1069. PMID 29887843 DOI: 10.3389/Fmicb.2018.01069  0.641
2015 Castro-Nallar E, Bendall ML, Pérez-Losada M, Sabuncyan S, Severance EG, Dickerson FB, Schroeder JR, Yolken RH, Crandall KA. Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls. Peerj. 3: e1140. PMID 26336637 DOI: 10.7717/Peerj.1140  0.41
2015 Pérez-Losada M, Castro-Nallar E, Bendall ML, Freishtat RJ, Crandall KA. Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma. Plos One. 10: e0131819. PMID 26125632 DOI: 10.1371/Journal.Pone.0131819  0.49
2014 Bracken-Grissom HD, Ahyong ST, Wilkinson RD, Feldmann RM, Schweitzer CE, Breinholt JW, Bendall M, Palero F, Chan TY, Felder DL, Robles R, Chu KH, Tsang LM, Kim D, Martin JW, et al. The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (decapoda: achelata, astacidea, glypheidea, polychelida). Systematic Biology. 63: 457-79. PMID 24562813 DOI: 10.1093/Sysbio/Syu008  0.704
2013 Francis OE, Bendall M, Manimaran S, Hong C, Clement NL, Castro-Nallar E, Snell Q, Schaalje GB, Clement MJ, Crandall KA, Johnson WE. Pathoscope: species identification and strain attribution with unassembled sequencing data. Genome Research. 23: 1721-9. PMID 23843222 DOI: 10.1101/Gr.150151.112  0.609
2010 Maxwell TJ, Bendall ML, Staples J, Jarvis T, Crandall KA. Phylogenetics applied to genotype/phenotype association and selection analyses with sequence data from angptl4 in humans. International Journal of Molecular Sciences. 11: 370-85. PMID 20162021 DOI: 10.3390/Ijms11010370  0.484
2009 Lewis-Rogers N, Bendall ML, Crandall KA. Phylogenetic relationships and molecular adaptation dynamics of human rhinoviruses. Molecular Biology and Evolution. 26: 969-81. PMID 19182223 DOI: 10.1093/Molbev/Msp009  0.682
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