| Year |
Citation |
Score |
| 2020 |
Vaca Jacome AS, Peckner R, Shulman N, Krug K, DeRuff KC, Officer A, Christianson KE, MacLean B, MacCoss MJ, Carr SA, Jaffe JD. Avant-garde: an automated data-driven DIA data curation tool. Nature Methods. PMID 33199889 DOI: 10.1038/s41592-020-00986-4 |
0.303 |
|
| 2020 |
Remes PM, Yip P, MacCoss MJ. Highly Multiplex Targeted Proteomics Enabled by Real-Time Chromatographic Alignment. Analytical Chemistry. 92: 11809-11817. PMID 32867497 DOI: 10.1021/Acs.Analchem.0C02075 |
0.373 |
|
| 2020 |
Chiao YA, Zhang H, Sweetwyne M, Whitson J, Ting YS, Basisty N, Pino LK, Quarles E, Nguyen NH, Campbell MD, Zhang T, Gaffrey MJ, Merrihew G, Wang L, Yue Y, ... ... MacCoss MJ, et al. Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice. Elife. 9. PMID 32648542 DOI: 10.7554/Elife.55513 |
0.726 |
|
| 2020 |
Ray J, Kruse A, Ozer A, Kajitani T, Johnson R, MacCoss M, Heck M, Lis JT. RNA aptamer capture of macromolecular complexes for mass spectrometry analysis. Nucleic Acids Research. PMID 32609809 DOI: 10.1093/Nar/Gkaa542 |
0.461 |
|
| 2020 |
Shamsaei B, Chojnacki S, Pilarczyk M, Najafabadi M, Niu W, Chen C, Ross K, Matlock A, Muhlich J, Chutipongtanate S, Zheng J, Turner J, Vidović D, Jaffe J, MacCoss M, et al. piNET: a versatile web platform for downstream analysis and visualization of proteomics data. Nucleic Acids Research. PMID 32469073 DOI: 10.1093/Nar/Gkaa436 |
0.398 |
|
| 2020 |
Rohde T, Chupalov R, Shulman N, Sharma V, Eckels J, Pratt BS, MacCoss MJ, MacLean BX. Audit Logs to enforce document integrity in Skyline & Panorama. Bioinformatics (Oxford, England). PMID 32467974 DOI: 10.1093/Bioinformatics/Btaa547 |
0.302 |
|
| 2020 |
Pino LK, Just SC, MacCoss MJ, Searle BC. Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries. Molecular & Cellular Proteomics : McP. PMID 32312845 DOI: 10.1074/Mcp.P119.001913 |
0.814 |
|
| 2020 |
Federation AJ, Nandakumar V, Searle BC, Stergachis A, Wang H, Pino LK, Merrihew G, Ting YS, Howard N, Kutyavin T, MacCoss MJ, Stamatoyannopoulos JA. Highly Parallel Quantification and Compartment Localization of Transcription Factors and Nuclear Proteins. Cell Reports. 30: 2463-2471.e5. PMID 32101728 DOI: 10.1016/J.Celrep.2020.01.096 |
0.793 |
|
| 2020 |
Pino LK, Searle BC, Yang HY, Hoofnagle AN, Noble WS, MacCoss MJ. Matrix-matched calibration curves for assessing analytical figures of merit in quantitative proteomics. Journal of Proteome Research. PMID 32037841 DOI: 10.1021/Acs.Jproteome.9B00666 |
0.828 |
|
| 2020 |
Fleites LA, Johnson R, Kruse AR, Nachman RJ, Hall DG, MacCoss MJ, Heck M. Peptidomics approaches for the identification of bioactive molecules from . Journal of Proteome Research. PMID 32037832 DOI: 10.1021/Acs.Jproteome.9B00509 |
0.442 |
|
| 2020 |
Lazarchuk P, Hernandez-Villanueva J, Pavlova MN, Federation A, MacCoss M, Sidorova JM. Mutual Balance of Histone Deacetylases 1 and 2 and the Acetyl Reader ATAD2 Regulates the Level of Acetylation of Histone H4 on Nascent Chromatin of Human Cells. Molecular and Cellular Biology. 40. PMID 32015101 DOI: 10.1128/Mcb.00421-19 |
0.709 |
|
| 2020 |
Adams KJ, Pratt B, Bose N, Dubois LG, St John-Williams L, Perrott KM, Ky K, Kapahi P, Sharma V, MacCoss MJ, Moseley MA, Colton CA, MacLean BX, Schilling B, Thompson JW. Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics. Journal of Proteome Research. PMID 31984744 DOI: 10.1021/Acs.Jproteome.9B00640 |
0.405 |
|
| 2020 |
Chiao YA, Zhang H, Sweetwyne M, Whitson J, Ting YS, Basisty N, Pino LK, Quarles E, Nguyen N, Campbell MD, Zhang T, Gaffrey MJ, Merrihew G, Wang L, Yue Y, ... ... MacCoss MJ, et al. Author response: Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice Elife. DOI: 10.7554/Elife.55513.Sa2 |
0.719 |
|
| 2020 |
Thangudu RR, Rudnick PA, Holck M, Singhal D, MacCoss MJ, Edwards NJ, Ketchum KA, Kinsinger CR, Kim E, Basu A. Abstract LB-242: Proteomic Data Commons: A resource for proteogenomic analysis Cancer Research. 80. DOI: 10.1158/1538-7445.Am2020-Lb-242 |
0.349 |
|
| 2019 |
Johnson R, Searle BC, Nunn BL, Gilmore JM, Phillips M, Amemiya CT, Heck M, MacCoss MJ. Assessing protein sequence database suitability using de novo sequencing. Molecular & Cellular Proteomics : McP. PMID 31732549 DOI: 10.1074/Mcp.Tir119.001752 |
0.821 |
|
| 2019 |
Deutsch EW, Bandeira N, Sharma V, Perez-Riverol Y, Carver JJ, Kundu DJ, García-Seisdedos D, Jarnuczak AF, Hewapathirana S, Pullman BS, Wertz J, Sun Z, Kawano S, Okuda S, Watanabe Y, ... ... MacCoss MJ, et al. The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. Nucleic Acids Research. PMID 31686107 DOI: 10.1093/Nar/Gkz984 |
0.339 |
|
| 2019 |
Searle BC, Lawrence RT, MacCoss MJ, Villén J. Thesaurus: quantifying phosphopeptide positional isomers. Nature Methods. 16: 703-706. PMID 31363206 DOI: 10.1038/S41592-019-0498-4 |
0.663 |
|
| 2019 |
Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews PC, Bernfur K, Borchers CH, Brodie NI, Bruce JE, Cao Y, Chaignepain S, Chavez JD, Claverol S, Cox J, Davis TN, ... ... MacCoss MJ, et al. The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study. Analytical Chemistry. PMID 31045356 DOI: 10.1021/Acs.Analchem.9B00658 |
0.747 |
|
| 2019 |
Vincow ES, Thomas RE, Merrihew G, Shulman NJ, Bammler TK, MacDonald JW, MacCoss MJ, Pallanck LJ. Autophagy accounts for approximately one-third of mitochondrial protein turnover and is protein selective. Autophagy. PMID 30865561 DOI: 10.1080/15548627.2019.1586258 |
0.308 |
|
| 2019 |
Amodei D, Egertson J, MacLean BX, Johnson R, Merrihew GE, Keller A, Marsh D, Vitek O, Mallick P, MacCoss MJ. Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows. Journal of the American Society For Mass Spectrometry. PMID 30671891 DOI: 10.1007/S13361-018-2122-8 |
0.804 |
|
| 2019 |
Chalkley RJ, MacCoss MJ, Jaffe JD, Röst HL. Initial Guidelines for Manuscripts Employing Data-independent Acquisition Mass Spectrometry for Proteomic Analysis. Molecular & Cellular Proteomics : McP. 18: 1-2. PMID 30602589 DOI: 10.1074/mcp.E118.001286 |
0.31 |
|
| 2018 |
Krahmer J, Goralogia GS, Kubota A, Zardilis A, Johnson RS, Song YH, MacCoss MJ, LeBihan T, Halliday KJ, Imaizumi T, Millar AJ. Time-resolved Interaction Proteomics of the GIGANTEA Protein Under Diurnal Cycles in Arabidopsis. Febs Letters. PMID 30536871 DOI: 10.1002/1873-3468.13311 |
0.374 |
|
| 2018 |
Searle BC, Pino LK, Egertson JD, Ting YS, Lawrence RT, MacLean BX, Villén J, MacCoss MJ. Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry. Nature Communications. 9: 5128. PMID 30510204 DOI: 10.1038/S41467-018-07454-W |
0.836 |
|
| 2018 |
Kim YJ, Sweet SM, Egertson JD, Sedgewick AJ, Woo S, Liao WL, Merrihew GE, Searle BC, Vaske C, Heaton R, MacCoss MJ, Hembrough T. Data-independent acquisition mass spectrometry to quantify protein levels in FFPE tumor biopsies for molecular diagnostics. Journal of Proteome Research. PMID 30481034 DOI: 10.1021/Acs.Jproteome.8B00699 |
0.809 |
|
| 2018 |
DeBlasio SL, Xu Y, Johnson RS, Rebelo AR, MacCoss MJ, Gray SM, Heck M. The Interaction Dynamics of Two Potato Leafroll Virus Movement Proteins Affects Their Localization to the Outer Membranes of Mitochondria and Plastids. Viruses. 10. PMID 30373157 DOI: 10.3390/V10110585 |
0.319 |
|
| 2018 |
Pino LK, Searle BC, Huang E, Noble WS, Hoofnagle AN, MacCoss MJ. Calibration using a single-point external reference material harmonizes quantitative mass spectrometry proteomics data between platforms and laboratories. Analytical Chemistry. PMID 30350613 DOI: 10.1021/acs.analchem.8b04581 |
0.813 |
|
| 2018 |
Thomas RE, Vincow ES, Merrihew GE, MacCoss MJ, Davis MY, Pallanck LJ. Glucocerebrosidase deficiency promotes protein aggregation through dysregulation of extracellular vesicles. Plos Genetics. 14: e1007694. PMID 30256786 DOI: 10.1371/Journal.Pgen.1007694 |
0.334 |
|
| 2018 |
Kruse A, Ramsey JS, Johnson R, Hall DG, MacCoss MJ, Heck M. 'Candidatus Liberibacter asiaticus' minimally alters expression of immunity and metabolism proteins in the hemolymph of Diaphorina citri, the insect vector of Huanglongbing. Journal of Proteome Research. PMID 30106293 DOI: 10.1021/Acs.Jproteome.8B00183 |
0.364 |
|
| 2018 |
MacLean BX, Pratt BS, Egertson JD, MacCoss MJ, Smith RD, Baker ES. Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. Journal of the American Society For Mass Spectrometry. PMID 30047074 DOI: 10.1007/S13361-018-2028-5 |
0.787 |
|
| 2018 |
Claw KG, George RD, MacCoss MJ, Swanson WJ. Quantitative evolutionary proteomics of seminal fluid from primates with different mating systems. Bmc Genomics. 19: 488. PMID 29929489 DOI: 10.1186/S12864-018-4872-X |
0.71 |
|
| 2018 |
Litichevskiy L, Peckner R, Abelin JG, Asiedu JK, Creech AL, Davis JF, Davison D, Dunning CM, Egertson JD, Egri S, Gould J, Ko T, Johnson SA, Lahr DL, Lam D, ... ... MacCoss MJ, et al. A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations. Cell Systems. PMID 29655704 DOI: 10.1016/J.Cels.2018.03.012 |
0.729 |
|
| 2018 |
Tseng BS, Reichhardt C, Merrihew GE, Araujo-Hernandez SA, Harrison JJ, MacCoss MJ, Parsek MR. A Biofilm Matrix-Associated Protease Inhibitor Protects Pseudomonas aeruginosa from Proteolytic Attack. Mbio. 9. PMID 29636440 DOI: 10.1128/Mbio.00543-18 |
0.306 |
|
| 2018 |
Peckner R, Myers SA, Jacome ASV, Egertson JD, Abelin JG, MacCoss MJ, Carr SA, Jaffe JD. Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics. Nature Methods. PMID 29608554 DOI: 10.1038/Nmeth.4643 |
0.808 |
|
| 2018 |
Sharma V, Eckels J, Schilling B, Ludwig C, Jaffe JD, MacCoss MJ, MacLean B. Panorama Public: A public repository for quantitative data sets processed in Skyline. Molecular & Cellular Proteomics : McP. PMID 29487113 DOI: 10.1074/Mcp.Ra117.000543 |
0.318 |
|
| 2018 |
Aebersold R, Agar JN, Amster IJ, Baker MS, Bertozzi CR, Boja ES, Costello CE, Cravatt BF, Fenselau C, Garcia BA, Ge Y, Gunawardena J, Hendrickson RC, Hergenrother PJ, Huber CG, ... ... MacCoss MJ, et al. How many human proteoforms are there? Nature Chemical Biology. 14: 206-214. PMID 29443976 DOI: 10.1038/Nchembio.2576 |
0.565 |
|
| 2018 |
Galitzine C, Egertson J, Abbatiello SE, Henderson CM, Pino L, MacCoss MJ, Hoofnagle AN, Vitek O. Nonlinear regression improves accuracy of characterization of multiplexed mass spectrometric assays. Molecular & Cellular Proteomics : McP. PMID 29438992 DOI: 10.1074/Mcp.Ra117.000322 |
0.796 |
|
| 2018 |
Beck K, Camp N, Bereman M, Bollinger J, Egertson J, MacCoss M, Wolf-Yadlin A. Development of Selected Reaction Monitoring Methods to Systematically Quantify Kinase Abundance and Phosphorylation Stoichiometry in Human Samples. Methods in Molecular Biology (Clifton, N.J.). 1636: 353-369. PMID 28730491 DOI: 10.1007/978-1-4939-7154-1_23 |
0.786 |
|
| 2018 |
Campbell M, Gaffrey M, Egertson J, Merrihew G, Perez M, Wang L, Villen J, MacCoss M, Qian W, Marcinek D. Reversal of age related post-translational modifications improves mitochondrial and skeletal muscle function through redox dependent mechanisms Free Radical Biology and Medicine. 128: S124. DOI: 10.1016/J.Freeradbiomed.2018.10.305 |
0.733 |
|
| 2017 |
Henderson CM, Shulman NJ, MacLean B, MacCoss MJ, Hoofnagle AN. Skyline Performs as Well as Vendor Software in the Quantitative Analysis of Serum 25-Hydroxy Vitamin D and Vitamin D Binding Globulin. Clinical Chemistry. PMID 29203474 DOI: 10.1373/Clinchem.2017.282293 |
0.382 |
|
| 2017 |
Andeen NK, Yang HY, Dai DF, MacCoss MJ, Smith KD. DnaJ Homolog Subfamily B Member 9 Is a Putative Autoantigen in Fibrillary GN. Journal of the American Society of Nephrology : Jasn. PMID 29097624 DOI: 10.1681/Asn.2017050566 |
0.803 |
|
| 2017 |
Basisty NB, Liu Y, Reynolds J, Karunadharma PP, Dai DF, Fredrickson J, Beyer RP, MacCoss MJ, Rabinovitch PS. Stable Isotope Labeling Reveals Novel Insights Into Ubiquitin-Mediated Protein Aggregation With Age, Calorie Restriction, and Rapamycin Treatment. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. PMID 28958078 DOI: 10.1093/Gerona/Glx047 |
0.367 |
|
| 2017 |
Rosenberger G, Bludau I, Schmitt U, Heusel M, Hunter CL, Liu Y, MacCoss MJ, MacLean BX, Nesvizhskii AI, Pedrioli PGA, Reiter L, Röst HL, Tate S, Ting YS, Collins BC, et al. Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses. Nature Methods. PMID 28825704 DOI: 10.1038/Nmeth.4398 |
0.508 |
|
| 2017 |
DeBlasio SL, Bereman MS, Mahoney J, Thannhauser TW, Gray SM, MacCoss MJ, Cilia Heck M. Evaluation of a Bead-Free Coimmunoprecipitation Technique for Identification of Virus-Host Protein Interactions Using High-Resolution Mass Spectrometry. Journal of Biomolecular Techniques : Jbt. PMID 28785175 DOI: 10.7171/jbt.17-2803-002 |
0.665 |
|
| 2017 |
Ting YS, Egertson JD, Bollinger JG, Searle BC, Payne SH, Noble WS, MacCoss MJ. PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data. Nature Methods. PMID 28783153 DOI: 10.1038/Nmeth.4390 |
0.83 |
|
| 2017 |
Goulding SP, Szumlinski KK, Contet C, MacCoss MJ, Wu CC. A mass spectrometry-based proteomic analysis of Homer2-interacting proteins in the mouse brain. Journal of Proteomics. PMID 28728878 DOI: 10.1016/J.Jprot.2017.07.008 |
0.8 |
|
| 2017 |
Pino LK, Searle BC, Bollinger JG, Nunn B, MacLean B, MacCoss MJ. The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics. Mass Spectrometry Reviews. PMID 28691345 DOI: 10.1002/Mas.21540 |
0.817 |
|
| 2017 |
Sakano H, Zorio DAR, Wang X, Ting YS, Noble WS, MacCoss MJ, Rubel EW, Wang Y. Proteomic analyses of nucleus laminaris identified candidate targets of the fragile X mental retardation protein. The Journal of Comparative Neurology. PMID 28685837 DOI: 10.1002/Cne.24281 |
0.57 |
|
| 2017 |
Kruse A, Fattah-Hosseini S, Saha S, Johnson R, Warwick E, Sturgeon K, Mueller L, MacCoss MJ, Shatters RG, Cilia Heck M. Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut. Plos One. 12: e0179531. PMID 28632769 DOI: 10.1371/Journal.Pone.0179531 |
0.3 |
|
| 2017 |
Kubota A, Ito S, Shim JS, Johnson RS, Song YH, Breton G, Goralogia GS, Kwon MS, Laboy Cintrón D, Koyama T, Ohme-Takagi M, Pruneda-Paz JL, Kay SA, MacCoss MJ, Imaizumi T. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. Plos Genetics. 13: e1006856. PMID 28628608 DOI: 10.1371/Journal.Pgen.1006856 |
0.301 |
|
| 2017 |
Zimmerman SG, Merrihew GE, MacCoss MJ, Berg CA. Proteomics Analysis Identifies Orthologs of Human Chitinase-Like Proteins as Inducers of Tube-Morphogenesis Defects in Drosophila. Genetics. PMID 28404605 DOI: 10.1534/Genetics.116.199323 |
0.314 |
|
| 2017 |
Ramsey JS, Chavez JD, Johnson R, Hosseinzadeh S, Mahoney JE, Mohr JP, Robison F, Zhong X, Hall DG, MacCoss M, Bruce J, Cilia M. Protein interaction networks at the host-microbe interface in Diaphorina citri, the insect vector of the citrus greening pathogen. Royal Society Open Science. 4: 160545. PMID 28386418 DOI: 10.1098/Rsos.160545 |
0.308 |
|
| 2017 |
Spencer SE, Corso TN, Bollinger JG, Henderson CM, Hoofnagle AN, MacCoss MJ. Automated Trapping Column Exchanger for High-Throughput Nanoflow Liquid Chromatography. Analytical Chemistry. PMID 28192907 DOI: 10.1021/Acs.Analchem.6B04227 |
0.615 |
|
| 2017 |
Abbatiello SE, Ackermann BL, Borchers CH, Bradshaw RA, Carr SA, Chalkley RJ, Choi M, Deutsch EW, Domon B, Hoofnagle AN, Keshishian H, Kuhn E, Liebler DC, MacCoss MJ, MacLean B, et al. New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins. Molecular & Cellular Proteomics : McP. PMID 28183812 DOI: 10.1074/Mcp.E117.067801 |
0.471 |
|
| 2017 |
Henderson CM, Bollinger JG, Becker JO, Wallace JM, Laha TJ, MacCoss MJ, Hoofnagle AN. Quantification by nano liquid chromatography-parallel reaction monitoring-mass spectrometry of human apolipoprotein A-I, apolipoprotein B, and hemoglobin A1c in dried blood spots. Proteomics. Clinical Applications. PMID 28112871 DOI: 10.1002/Prca.201600103 |
0.67 |
|
| 2016 |
Berger S, Procko E, Margineantu D, Lee EF, Shen BW, Zelter A, Silva DA, Chawla K, Herold MJ, Garnier JM, Johnson R, MacCoss MJ, Lessene G, Davis TN, Stayton PS, et al. Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer. Elife. 5. PMID 27805565 DOI: 10.7554/Elife.20352 |
0.332 |
|
| 2016 |
DeBlasio SL, Johnson RS, MacCoss MJ, Gray SM, Cilia M. Model system-guided protein interaction mapping for virus isolated from phloem tissue. Journal of Proteome Research. PMID 27762138 DOI: 10.1021/Acs.Jproteome.6B00715 |
0.324 |
|
| 2016 |
Bereman MS, Beri J, Sharma V, Nathe C, Eckels J, MacLean B, MacCoss MJ. An Automated Pipeline to Monitor System Performance in Liquid Chromatography-Tandem Mass Spectrometry Proteomic Experiments. Journal of Proteome Research. PMID 27700092 DOI: 10.1021/Acs.Jproteome.6B00744 |
0.727 |
|
| 2016 |
The M, MacCoss MJ, Noble WS, Käll L. Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0. Journal of the American Society For Mass Spectrometry. PMID 27572102 DOI: 10.1007/S13361-016-1460-7 |
0.646 |
|
| 2016 |
Basisty N, Dai DF, Gagnidze A, Gitari L, Fredrickson J, Maina Y, Beyer RP, Emond MJ, Hsieh EJ, MacCoss MJ, Martin GM, Rabinovitch PS. Mitochondrial-targeted catalase is good for the old mouse proteome, but not for the young: 'reverse' antagonistic pleiotropy? Aging Cell. PMID 27061426 DOI: 10.1111/Acel.12472 |
0.744 |
|
| 2016 |
Whiteaker JR, Halusa GN, Hoofnagle AN, Sharma V, MacLean B, Yan P, Wrobel JA, Kennedy J, Mani DR, Zimmerman LJ, Meyer MR, Mesri M, Boja E, Carr SA, Chan DW, ... ... MacCoss MJ, et al. Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays. Methods in Molecular Biology (Clifton, N.J.). 1410: 223-36. PMID 26867747 DOI: 10.1007/978-1-4939-3524-6_13 |
0.444 |
|
| 2016 |
Bollinger JG, Stergachis AB, Johnson RS, Egertson JD, MacCoss MJ. Selecting Optimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins as Analytical Standards. Methods in Molecular Biology (Clifton, N.J.). 1410: 207-21. PMID 26867746 DOI: 10.1007/978-1-4939-3524-6_12 |
0.817 |
|
| 2015 |
Ramsey JS, Johnson RS, Hoki JS, Kruse A, Mahoney J, Hilf ME, Hunter WB, Hall DG, Schroeder FC, MacCoss MJ, Cilia M. Metabolic Interplay between the Asian Citrus Psyllid and Its Profftella Symbiont: An Achilles' Heel of the Citrus Greening Insect Vector. Plos One. 10: e0140826. PMID 26580079 DOI: 10.1371/Journal.Pone.0140826 |
0.359 |
|
| 2015 |
Zelter A, Bonomi M, Kim JO, Umbreit NT, Hoopmann MR, Johnson R, Riffle M, Jaschob D, MacCoss MJ, Moritz RL, Davis TN. The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling. Nature Communications. 6: 8673. PMID 26560693 DOI: 10.1038/Ncomms9673 |
0.628 |
|
| 2015 |
Kawahara R, Bollinger JG, Rivera C, Ribeiro AC, Brandão TB, Leme AF, MacCoss MJ. A targeted proteomic strategy for the measurement of oral cancer candidate biomarkers in human saliva. Proteomics. PMID 26552850 DOI: 10.1002/Pmic.201500224 |
0.627 |
|
| 2015 |
Kruse SE, Karunadharma PP, Basisty N, Johnson R, Beyer RP, MacCoss MJ, Rabinovitch PS, Marcinek DJ. Age modifies respiratory complex I and protein homeostasis in a muscle type-specific manner. Aging Cell. PMID 26498839 DOI: 10.1111/Acel.12412 |
0.303 |
|
| 2015 |
Schilling B, MacLean B, Held JM, Sahu AK, Rardin MJ, Sorensen DJ, Peters T, Wolfe AJ, Hunter CL, MacCoss MJ, Gibson BW. Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows. Analytical Chemistry. PMID 26398777 DOI: 10.1021/Acs.Analchem.5B02983 |
0.482 |
|
| 2015 |
Ting YS, Egertson JD, Payne SH, Kim S, MacLean B, Käll L, Aebersold RH, Smith RD, Noble WS, MacCoss MJ. Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data. Molecular & Cellular Proteomics : McP. PMID 26217018 DOI: 10.1074/Mcp.O114.047035 |
0.832 |
|
| 2015 |
Riffle M, Merrihew GE, Jaschob D, Sharma V, Davis TN, Noble WS, MacCoss MJ. Visualization and Dissemination of Multidimensional Proteomics Data Comparing Protein Abundance During Caenorhabditis elegans Development. Journal of the American Society For Mass Spectrometry. PMID 26133526 DOI: 10.1007/S13361-015-1193-Z |
0.607 |
|
| 2015 |
Eng JK, Hoopmann MR, Jahan TA, Egertson JD, Noble WS, MacCoss MJ. A Deeper Look into Comet-Implementation and Features. Journal of the American Society For Mass Spectrometry. PMID 26115965 DOI: 10.1007/S13361-015-1179-X |
0.779 |
|
| 2015 |
Searle BC, Egertson JD, Bollinger JG, Stergachis AB, MacCoss MJ. Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments. Molecular & Cellular Proteomics : McP. 14: 2331-40. PMID 26100116 DOI: 10.1074/Mcp.M115.051300 |
0.82 |
|
| 2015 |
Egertson JD, MacLean B, Johnson R, Xuan Y, MacCoss MJ. Multiplexed peptide analysis using data-independent acquisition and Skyline. Nature Protocols. 10: 887-903. PMID 25996789 DOI: 10.1038/Nprot.2015.055 |
0.8 |
|
| 2015 |
Rardin MJ, Schilling B, Cheng LY, MacLean BX, Sorenson DJ, Sahu AK, MacCoss MJ, Vitek O, Gibson BW. MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments. Molecular & Cellular Proteomics : McP. PMID 25987414 DOI: 10.1074/Mcp.O115.048181 |
0.433 |
|
| 2015 |
Karunadharma PP, Basisty N, Chiao YA, Dai DF, Drake R, Levy N, Koh WJ, Emond MJ, Kruse S, Marcinek D, Maccoss MJ, Rabinovitch PS. Respiratory chain protein turnover rates in mice are highly heterogeneous but strikingly conserved across tissues, ages, and treatments. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 25977255 DOI: 10.1096/Fj.15-272666 |
0.364 |
|
| 2015 |
Hoopmann MR, Zelter A, Johnson RS, Riffle M, MacCoss MJ, Davis TN, Moritz RL. Kojak: efficient analysis of chemically cross-linked protein complexes. Journal of Proteome Research. 14: 2190-8. PMID 25812159 DOI: 10.1021/Pr501321H |
0.68 |
|
| 2015 |
Karunadharma PP, Basisty N, Dai DF, Chiao YA, Quarles EK, Hsieh EJ, Crispin D, Bielas JH, Ericson NG, Beyer RP, MacKay VL, MacCoss MJ, Rabinovitch PS. Subacute calorie restriction and rapamycin discordantly alter mouse liver proteome homeostasis and reverse aging effects. Aging Cell. 14: 547-57. PMID 25807975 DOI: 10.1111/Acel.12317 |
0.776 |
|
| 2015 |
DeBlasio SL, Johnson R, Sweeney MM, Karasev A, Gray SM, MacCoss MJ, Cilia M. Potato leafroll virus structural proteins manipulate overlapping, yet distinct protein interaction networks during infection. Proteomics. 15: 2098-112. PMID 25787689 DOI: 10.1002/Pmic.201400594 |
0.341 |
|
| 2015 |
Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, MacLean B, Albertolle M, Allen S, Burgess M, Cusack MP, Ghosh M, Hedrick V, Held JM, Inerowicz HD, Jackson A, ... ... MacCoss MJ, et al. Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma. Molecular & Cellular Proteomics : McP. PMID 25693799 DOI: 10.1074/Mcp.M114.047050 |
0.483 |
|
| 2015 |
DeBlasio SL, Johnson R, Mahoney J, Karasev A, Gray SM, MacCoss MJ, Cilia M. Insights into the polerovirus-plant interactome revealed by coimmunoprecipitation and mass spectrometry. Molecular Plant-Microbe Interactions : Mpmi. 28: 467-81. PMID 25496593 DOI: 10.1094/Mpmi-11-14-0363-R |
0.358 |
|
| 2015 |
Kim TY, Siesser PF, Rossman KL, Goldfarb D, Mackinnon K, Yan F, Yi X, MacCoss MJ, Moon RT, Der CJ, Major MB. Substrate trapping proteomics reveals targets of the βTrCP2/FBXW11 ubiquitin ligase. Molecular and Cellular Biology. 35: 167-81. PMID 25332235 DOI: 10.1128/Mcb.00857-14 |
0.576 |
|
| 2014 |
Song YH, Estrada DA, Johnson RS, Kim SK, Lee SY, MacCoss MJ, Imaizumi T. Distinct roles of FKF1, Gigantea, and Zeitlupe proteins in the regulation of Constans stability in Arabidopsis photoperiodic flowering. Proceedings of the National Academy of Sciences of the United States of America. 111: 17672-7. PMID 25422419 DOI: 10.1073/Pnas.1415375111 |
0.335 |
|
| 2014 |
Marsillach J, Suzuki SM, Richter RJ, McDonald MG, Rademacher PM, MacCoss MJ, Hsieh EJ, Rettie AE, Furlong CE. Human valacyclovir hydrolase/biphenyl hydrolase-like protein is a highly efficient homocysteine thiolactonase. Plos One. 9: e110054. PMID 25333274 DOI: 10.1371/Journal.Pone.0110054 |
0.775 |
|
| 2014 |
Canterbury JD, Merrihew GE, MacCoss MJ, Goodlett DR, Shaffer SA. Comparison of data acquisition strategies on quadrupole ion trap instrumentation for shotgun proteomics. Journal of the American Society For Mass Spectrometry. 25: 2048-59. PMID 25261218 DOI: 10.1007/S13361-014-0981-1 |
0.359 |
|
| 2014 |
Tien JF, Umbreit NT, Zelter A, Riffle M, Hoopmann MR, Johnson RS, Fonslow BR, Yates JR, MacCoss MJ, Moritz RL, Asbury CL, Davis TN. Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex. Genetics. 198: 1483-93. PMID 25230952 DOI: 10.1534/Genetics.114.167775 |
0.612 |
|
| 2014 |
McIlwain S, Tamura K, Kertesz-Farkas A, Grant CE, Diament B, Frewen B, Howbert JJ, Hoopmann MR, Käll L, Eng JK, MacCoss MJ, Noble WS. Crux: rapid open source protein tandem mass spectrometry analysis. Journal of Proteome Research. 13: 4488-91. PMID 25182276 DOI: 10.1021/Pr500741Y |
0.765 |
|
| 2014 |
Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B, Gibson BW, Colangelo CM, Paulovich AG, Carr SA, Jaffe JD, ... MacCoss MJ, et al. Panorama: a targeted proteomics knowledge base. Journal of Proteome Research. 13: 4205-10. PMID 25102069 DOI: 10.1021/Pr5006636 |
0.71 |
|
| 2014 |
Dai DF, Karunadharma PP, Chiao YA, Basisty N, Crispin D, Hsieh EJ, Chen T, Gu H, Djukovic D, Raftery D, Beyer RP, MacCoss MJ, Rabinovitch PS. Altered proteome turnover and remodeling by short-term caloric restriction or rapamycin rejuvenate the aging heart. Aging Cell. 13: 529-39. PMID 24612461 DOI: 10.1111/Acel.12203 |
0.75 |
|
| 2014 |
Pinheiro P, Bereman MS, Burd J, Pals M, Armstrong S, Howe KJ, Thannhauser TW, MacCoss MJ, Gray SM, Cilia M. Evidence of the biochemical basis of host virulence in the greenbug aphid, Schizaphis graminum (Homoptera: Aphididae). Journal of Proteome Research. 13: 2094-108. PMID 24588548 DOI: 10.1021/Pr4012415 |
0.659 |
|
| 2014 |
Bereman MS, Johnson R, Bollinger J, Boss Y, Shulman N, MacLean B, Hoofnagle AN, MacCoss MJ. Implementation of statistical process control for proteomic experiments via LC MS/MS. Journal of the American Society For Mass Spectrometry. 25: 581-7. PMID 24496601 DOI: 10.1007/S13361-013-0824-5 |
0.801 |
|
| 2014 |
Fujimoto GM, Monroe ME, Rodriguez L, Wu C, MacLean B, Smith RD, MacCoss MJ, Payne SH. Accounting for population variation in targeted proteomics. Journal of Proteome Research. 13: 321-3. PMID 24320210 DOI: 10.1021/Pr4011052 |
0.38 |
|
| 2014 |
Bateman NW, Goulding SP, Shulman NJ, Gadok AK, Szumlinski KK, MacCoss MJ, Wu CC. Maximizing peptide identification events in proteomic workflows using data-dependent acquisition (DDA) Molecular and Cellular Proteomics. 13: 329-338. PMID 23820513 DOI: 10.1074/Mcp.M112.026500 |
0.825 |
|
| 2014 |
Woo S, Cha SW, Merrihew G, He Y, Castellana N, Guest C, MacCoss M, Bafna V. Proteogenomic database construction driven from large scale RNA-seq data. Journal of Proteome Research. 13: 21-8. PMID 23802565 DOI: 10.1021/Pr400294C |
0.311 |
|
| 2014 |
Chiao YA, Basisty N, Sonia Ting Y, Szeto HH, MacCoss MJ, Rabinovitch PS. Short Term Treatment with Mitochondrial Protective Peptide Reverses Cardiac Aging in Mice Free Radical Biology and Medicine. 76: S31. DOI: 10.1016/J.Freeradbiomed.2014.10.440 |
0.307 |
|
| 2013 |
Tamborindeguy C, Bereman MS, DeBlasio S, Igwe D, Smith DM, White F, MacCoss MJ, Gray SM, Cilia M. Genomic and proteomic analysis of Schizaphis graminum reveals cyclophilin proteins are involved in the transmission of cereal yellow dwarf virus. Plos One. 8: e71620. PMID 23951206 DOI: 10.1371/Journal.Pone.0071620 |
0.669 |
|
| 2013 |
Dai DF, Hsieh EJ, Chen T, Menendez LG, Basisty NB, Tsai L, Beyer RP, Crispin DA, Shulman NJ, Szeto HH, Tian R, MacCoss MJ, Rabinovitch PS. Global proteomics and pathway analysis of pressure-overload-induced heart failure and its attenuation by mitochondrial-targeted peptides. Circulation. Heart Failure. 6: 1067-76. PMID 23935006 DOI: 10.1161/Circheartfailure.113.000406 |
0.766 |
|
| 2013 |
Schleit J, Johnson SC, Bennett CF, Simko M, Trongtham N, Castanza A, Hsieh EJ, Moller RM, Wasko BM, Delaney JR, Sutphin GL, Carr D, Murakami CJ, Tocchi A, Xian B, ... ... MacCoss MJ, et al. Molecular mechanisms underlying genotype-dependent responses to dietary restriction. Aging Cell. 12: 1050-61. PMID 23837470 DOI: 10.1111/Acel.12130 |
0.746 |
|
| 2013 |
Conlon KP, Basrur V, Rolland D, Wolfe T, Nesvizhskii AI, MacCoss MJ, Lim MS, Elenitoba-Johnson KSJ. Fusion peptides from oncogenic chimeric proteins as putative specific biomarkers of cancer Molecular and Cellular Proteomics. 12: 2714-2723. PMID 23836920 DOI: 10.1074/Mcp.M113.029926 |
0.412 |
|
| 2013 |
Egertson JD, Kuehn A, Merrihew GE, Bateman NW, MacLean BX, Ting YS, Canterbury JD, Marsh DM, Kellmann M, Zabrouskov V, Wu CC, MacCoss MJ. Multiplexed MS/MS for improved data-independent acquisition Nature Methods. 10: 744-746. PMID 23793237 DOI: 10.1038/Nmeth.2528 |
0.789 |
|
| 2013 |
Skelly DA, Merrihew GE, Riffle M, Connelly CF, Kerr EO, Johansson M, Jaschob D, Graczyk B, Shulman NJ, Wakefield J, Cooper SJ, Fields S, Noble WS, Muller EG, Davis TN, ... ... Maccoss MJ, et al. Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast. Genome Research. 23: 1496-504. PMID 23720455 DOI: 10.1101/Gr.155762.113 |
0.489 |
|
| 2013 |
Glukhova VA, Tomazela DM, Findlay GD, Monnat RJ, MacCoss MJ. Rapid assessment of RNAi-mediated protein depletion by selected reaction monitoring mass spectrometry. Journal of Proteome Research. 12: 3246-54. PMID 23713831 DOI: 10.1021/Pr400067K |
0.738 |
|
| 2013 |
Abbatiello SE, Mani DR, Schilling B, Maclean B, Zimmerman LJ, Feng X, Cusack MP, Sedransk N, Hall SC, Addona T, Allen S, Dodder NG, Ghosh M, Held JM, Hedrick V, ... ... Maccoss M, et al. Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS). Molecular & Cellular Proteomics : McP. 12: 2623-39. PMID 23689285 DOI: 10.1074/Mcp.M112.027078 |
0.725 |
|
| 2013 |
Goulding SP, MacCoss MJ, Wu CC. Label-free differential analysis of murine postsynaptic densities Methods in Molecular Biology. 1002: 295-309. PMID 23625411 DOI: 10.1007/978-1-62703-360-2_22 |
0.797 |
|
| 2013 |
Palmer MR, McDowall MH, Stewart L, Ouaddi A, MacCoss MJ, Swanson WJ. Mass spectrometry and next-generation sequencing reveal an abundant and rapidly evolving abalone sperm protein. Molecular Reproduction and Development. 80: 460-5. PMID 23585193 DOI: 10.1002/Mrd.22182 |
0.412 |
|
| 2013 |
Chan MM, Wooden JM, Tsang M, Gilligan DM, Hirenallur-S DK, Finney GL, Rynes E, Maccoss M, Ramirez JA, Park H, Iritani BM. Hematopoietic protein-1 regulates the actin membrane skeleton and membrane stability in murine erythrocytes. Plos One. 8: e54902. PMID 23424621 DOI: 10.1371/Journal.Pone.0054902 |
0.785 |
|
| 2013 |
Bereman MS, Hsieh EJ, Corso TN, Van Pelt CK, MacCoss MJ. Development and characterization of a novel plug and play liquid chromatography-mass spectrometry (LC-MS) source that automates connections between the capillary trap, column, and emitter Molecular and Cellular Proteomics. 12: 1701-1708. PMID 23422586 DOI: 10.1074/Mcp.O112.024893 |
0.808 |
|
| 2013 |
Hsieh EJ, Bereman MS, Durand S, Valaskovic GA, MacCoss MJ. Effects of column and gradient lengths on peak capacity and peptide identification in nanoflow LC-MS/MS of complex proteomic samples. Journal of the American Society For Mass Spectrometry. 24: 148-53. PMID 23197307 DOI: 10.1007/S13361-012-0508-6 |
0.821 |
|
| 2013 |
Marsillach J, Hsieh EJ, Richter RJ, MacCoss MJ, Furlong CE. Proteomic analysis of adducted butyrylcholinesterase for biomonitoring organophosphorus exposures. Chemico-Biological Interactions. 203: 85-90. PMID 23123252 DOI: 10.1016/J.Cbi.2012.10.019 |
0.752 |
|
| 2012 |
McIlwain S, Mathews M, Bereman MS, Rubel EW, MacCoss MJ, Noble WS. Estimating relative abundances of proteins from shotgun proteomics data. Bmc Bioinformatics. 13: 308. PMID 23164367 DOI: 10.1186/1471-2105-13-308 |
0.773 |
|
| 2012 |
Cilia M, Peter KA, Bereman MS, Howe K, Fish T, Smith D, Gildow F, MacCoss MJ, Thannhauser TW, Gray SM. Discovery and Targeted LC-MS/MS of Purified Polerovirus Reveals Differences in the Virus-Host Interactome Associated with Altered Aphid Transmission Plos One. 7. PMID 23118947 DOI: 10.1371/Journal.Pone.0048177 |
0.67 |
|
| 2012 |
Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, ... ... MacCoss M, et al. A cross-platform toolkit for mass spectrometry and proteomics. Nature Biotechnology. 30: 918-20. PMID 23051804 DOI: 10.1038/Nbt.2377 |
0.794 |
|
| 2012 |
Egertson JD, Eng JK, Bereman MS, Hsieh EJ, Merrihew GE, MacCoss MJ. De novo correction of mass measurement error in low resolution tandem MS spectra for shotgun proteomics Journal of the American Society For Mass Spectrometry. 23: 2075-2082. PMID 23007965 DOI: 10.1007/S13361-012-0482-Z |
0.798 |
|
| 2012 |
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, ... ... MacCoss MJ, et al. An expansive human regulatory lexicon encoded in transcription factor footprints. Nature. 489: 83-90. PMID 22955618 DOI: 10.1038/Nature11212 |
0.68 |
|
| 2012 |
Spivak M, Bereman MS, Maccoss MJ, Noble WS. Learning score function parameters for improved spectrum identification in tandem mass spectrometry experiments. Journal of Proteome Research. 11: 4499-508. PMID 22866926 DOI: 10.1021/Pr300234M |
0.771 |
|
| 2012 |
Hsieh EJ, Shulman NJ, Dai DF, Vincow ES, Karunadharma PP, Pallanck L, Rabinovitch PS, MacCoss MJ. Topograph, a software platform for precursor enrichment corrected global protein turnover measurements. Molecular & Cellular Proteomics : McP. 11: 1468-74. PMID 22865922 DOI: 10.1074/Mcp.O112.017699 |
0.794 |
|
| 2012 |
Sharma V, Eng JK, MacCoss MJ, Riffle M. A mass spectrometry proteomics data management platform Molecular and Cellular Proteomics. 11: 824-831. PMID 22611296 DOI: 10.1074/Mcp.O111.015149 |
0.385 |
|
| 2012 |
Bereman MS, Maclean B, Tomazela DM, Liebler DC, Maccoss MJ. The development of selected reaction monitoring methods for targeted proteomics via empirical refinement Proteomics. 12: 1134-1141. PMID 22577014 DOI: 10.1002/Pmic.201200042 |
0.826 |
|
| 2012 |
Escher C, Reiter L, Maclean B, Ossola R, Herzog F, Chilton J, Maccoss MJ, Rinner O. Using iRT, a normalized retention time for more targeted measurement of peptides Proteomics. 12: 1111-1121. PMID 22577012 DOI: 10.1002/Pmic.201100463 |
0.444 |
|
| 2012 |
Sherrod SD, Myers MV, Li M, Myers JS, Carpenter KL, Maclean B, Maccoss MJ, Liebler DC, Ham AJ. Label-free quantitation of protein modifications by pseudo selected reaction monitoring with internal reference peptides. Journal of Proteome Research. 11: 3467-79. PMID 22559222 DOI: 10.1021/Pr201240A |
0.476 |
|
| 2012 |
Bereman MS, Tomazela DM, Heins HS, Simonato M, Cogo PE, Hamvas A, Patterson BW, Cole FS, MacCoss MJ. A method to determine the kinetics of multiple proteins in human infants with respiratory distress syndrome Analytical and Bioanalytical Chemistry. 403: 2397-2402. PMID 22526637 DOI: 10.1007/S00216-012-5953-3 |
0.799 |
|
| 2012 |
Schilling B, Rardin MJ, MacLean BX, Zawadzka AM, Frewen BE, Cusack MP, Sorensen DJ, Bereman MS, Jing E, Wu CC, Verdin E, Kahn CR, Maccoss MJ, Gibson BW. Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation. Molecular & Cellular Proteomics : McP. 11: 202-14. PMID 22454539 DOI: 10.1074/Mcp.M112.017707 |
0.742 |
|
| 2012 |
Gilligan DM, Finney GL, Rynes E, MacCoss MJ, Lambert AJ, Peters LL, Robledo RF, Wooden JM. Retraction notice to "Comparative proteomics reveals deficiency of NHE-1 (Slc9a1) in RBCs from the beta-adducin knockout mouse model of hemolytic anemia" [Blood Cells Mol. Dis. 47 (2011) 85-94] Blood Cells, Molecules, and Diseases. 48: 145. PMID 22393569 DOI: 10.1016/J.Bcmd.2011.12.007 |
0.764 |
|
| 2012 |
Hoopmann MR, MacCoss MJ, Moritz RL. Identification of peptide features in precursor spectra using hardklör and krönik Current Protocols in Bioinformatics. PMID 22389013 DOI: 10.1002/0471250953.Bi1318S37 |
0.722 |
|
| 2012 |
Noble WS, MacCoss MJ. Computational and statistical analysis of protein mass spectrometry data. Plos Computational Biology. 8: e1002296. PMID 22291580 DOI: 10.1371/Journal.Pcbi.1002296 |
0.541 |
|
| 2012 |
Wojcik R, Li Y, Maccoss MJ, Dovichi NJ. Capillary electrophoresis with Orbitrap-Velos mass spectrometry detection. Talanta. 88: 324-9. PMID 22265506 DOI: 10.1016/J.Talanta.2011.10.048 |
0.477 |
|
| 2012 |
Bereman MS, Canterbury JD, Egertson JD, Horner J, Remes PM, Schwartz J, Zabrouskov V, MacCoss MJ. Evaluation of front-end higher energy collision-induced dissociation on a benchtop dual-pressure linear ion trap mass spectrometer for shotgun proteomics Analytical Chemistry. 84: 1533-1539. PMID 22192247 DOI: 10.1021/Ac203210A |
0.813 |
|
| 2012 |
Spivak M, Weston J, Tomazela D, MacCoss MJ, Noble WS. Direct maximization of protein identifications from tandem mass spectra. Molecular & Cellular Proteomics : McP. 11: M111.012161. PMID 22052992 DOI: 10.1074/Mcp.M111.012161 |
0.777 |
|
| 2012 |
Dai DF, Hsieh EJ, Liu Y, Chen T, Beyer RP, Chin MT, MacCoss MJ, Rabinovitch PS. Mitochondrial proteome remodelling in pressure overload-induced heart failure: The role of mitochondrial oxidative stress Cardiovascular Research. 93: 79-88. PMID 22012956 DOI: 10.1093/Cvr/Cvr274 |
0.722 |
|
| 2012 |
Cilia M, Bereman M, Fish T, MacCoss MJ, Gray S. Homopteran Vector Biomarkers for Efficient Circulative Plant Virus Transmission are Conserved in Multiple Aphid Species and the Whitefly Bemisia tabaci Journal of Integrative Agriculture. 11: 249-262. DOI: 10.1016/S2095-3119(12)60009-4 |
0.677 |
|
| 2011 |
Stergachis AB, MacLean B, Lee K, Stamatoyannopoulos JA, MacCoss MJ. Rapid empirical discovery of optimal peptides for targeted proteomics Nature Methods. 8: 1041-1046. PMID 22056677 DOI: 10.1038/Nmeth.1770 |
0.747 |
|
| 2011 |
Pierce SB, Spurrell CH, Mandell JB, Lee MK, Zeligson S, Bereman MS, Stray SM, Fokstuen S, MacCoss MJ, Levy-Lahad E, King MC, Motulsky AG. Garrod's fourth inborn error of metabolism solved by the identification of mutations causing pentosuria. Proceedings of the National Academy of Sciences of the United States of America. 108: 18313-7. PMID 22042873 DOI: 10.1073/Pnas.1115888108 |
0.635 |
|
| 2011 |
Marsillach J, Richter RJ, Kim JH, Stevens RC, MacCoss MJ, Tomazela D, Suzuki SM, Schopfer LM, Lockridge O, Furlong CE. Biomarkers of organophosphorus (OP) exposures in humans. Neurotoxicology. 32: 656-60. PMID 21767566 DOI: 10.1016/J.Neuro.2011.06.005 |
0.681 |
|
| 2011 |
Wooden JM, Finney GL, Rynes E, Maccoss MJ, Lambert AJ, Robledo RF, Peters LL, Gilligan DM. Comparative proteomics reveals deficiency of SLC9A1 (sodium/hydrogen exchanger NHE1) in β-adducin null red cells. British Journal of Haematology. 154: 492-501. PMID 21689084 DOI: 10.1111/J.1365-2141.2011.08612.X |
0.801 |
|
| 2011 |
Dean MD, Findlay GD, Hoopmann MR, Wu CC, MacCoss MJ, Swanson WJ, Nachman MW. Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling. Bmc Genomics. 12: 306. PMID 21663664 DOI: 10.1186/1471-2164-12-306 |
0.665 |
|
| 2011 |
Bereman MS, Egertson JD, Maccoss MJ. Comparison between procedures using SDS for shotgun proteomic analyses of complex samples Proteomics. 11: 2931-2935. PMID 21656683 DOI: 10.1002/Pmic.201100045 |
0.812 |
|
| 2011 |
Gilligan DM, Finney GL, Rynes E, Maccoss MJ, Lambert AJ, Peters LL, Robledo RF, Wooden JM. Comparative proteomics reveals deficiency of NHE-1 (Slc9a1) in RBCs from the beta-adducin knockout mouse model of hemolytic anemia. Blood Cells, Molecules & Diseases. 47: 85-94. PMID 21592827 DOI: 10.1016/J.Bcmd.2011.03.008 |
0.8 |
|
| 2011 |
Friedman DB, Andacht TM, Bunger MK, Chien AS, Hawke DH, Krijgsveld J, Lane WS, Lilley KS, MacCoss MJ, Moritz RL, Settlage RE, Sherman NE, Weintraub ST, Witkowska HE, Yates NA, et al. The ABRF Proteomics Research Group studies: educational exercises for qualitative and quantitative proteomic analyses. Proteomics. 11: 1371-81. PMID 21394914 DOI: 10.1002/Pmic.201000736 |
0.392 |
|
| 2010 |
MacLean B, Tomazela DM, Abbatiello SE, Zhang S, Whiteaker JR, Paulovich AG, Carr SA, MacCoss MJ. Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry Analytical Chemistry. 82: 10116-10124. PMID 21090646 DOI: 10.1021/Ac102179J |
0.72 |
|
| 2010 |
Ranjitkar P, Press MO, Yi X, Baker R, MacCoss MJ, Biggins S. An E3 Ubiquitin Ligase Prevents Ectopic Localization of the Centromeric Histone H3 Variant via the Centromere Targeting Domain Molecular Cell. 40: 455-464. PMID 21070971 DOI: 10.1016/J.Molcel.2010.09.025 |
0.474 |
|
| 2010 |
Sharma V, Eng JK, Feldman S, von Haller PD, MacCoss MJ, Noble WS. Precursor charge state prediction for electron transfer dissociation tandem mass spectra. Journal of Proteome Research. 9: 5438-44. PMID 20731383 DOI: 10.1021/Pr1006685 |
0.531 |
|
| 2010 |
Serang O, MacCoss MJ, Noble WS. Efficient marginalization to compute protein posterior probabilities from shotgun mass spectrometry data. Journal of Proteome Research. 9: 5346-57. PMID 20712337 DOI: 10.1021/Pr100594K |
0.615 |
|
| 2010 |
Kelley JL, Aagaard JE, MacCoss MJ, Swanson WJ. Functional diversification and evolution of antifreeze proteins in the antarctic fish Lycodichthys dearborni. Journal of Molecular Evolution. 71: 111-8. PMID 20686757 DOI: 10.1007/S00239-010-9367-6 |
0.351 |
|
| 2010 |
Cooper SJ, Finney GL, Brown SL, Nelson SK, Hesselberth J, MacCoss MJ, Fields S. High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection. Genome Research. 20: 1288-96. PMID 20610602 DOI: 10.1101/Gr.105825.110 |
0.791 |
|
| 2010 |
Zelter A, Hoopmann MR, Vernon R, Baker D, MacCoss MJ, Davis TN. Isotope signatures allow identification of chemically cross-linked peptides by mass spectrometry: A novel method to determine interresidue distances in protein structures through cross-linking Journal of Proteome Research. 9: 3583-3589. PMID 20476776 DOI: 10.1021/Pr1001115 |
0.714 |
|
| 2010 |
Canterbury JD, Gladden J, Buck L, Olund R, MacCoss MJ. A high voltage asymmetric waveform generator for FAIMS. Journal of the American Society For Mass Spectrometry. 21: 1118-21. PMID 20332067 DOI: 10.1016/J.Jasms.2010.02.019 |
0.308 |
|
| 2010 |
Kim JH, Stevens RC, MacCoss MJ, Goodlett DR, Scherl A, Richter RJ, Suzuki SM, Furlong CE. Identification and characterization of biomarkers of organophosphorus exposures in humans. Advances in Experimental Medicine and Biology. 660: 61-71. PMID 20221871 DOI: 10.1007/978-1-60761-350-3_7 |
0.323 |
|
| 2010 |
Tomazela DM, Patterson BW, Hanson E, Sponce KL, Kanion TB, Salinger DH, Vicini P, Barret H, Heins HB, Sessions Cole F, Hamvas A, MacCoss MJ. Measurement of human surfactant protein-B turnover in vivo from tracheal aspirates using targeted proteomics Analytical Chemistry. 82: 2561-2567. PMID 20178338 DOI: 10.1021/Ac1001433 |
0.7 |
|
| 2010 |
MacLean B, Tomazela DM, Shulman N, Chambers M, Finney GL, Frewen B, Kern R, Tabb DL, Liebler DC, MacCoss MJ. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics (Oxford, England). 26: 966-8. PMID 20147306 DOI: 10.1093/Bioinformatics/Btq054 |
0.812 |
|
| 2010 |
Bern M, Finney G, Hoopmann MR, Merrihew G, Toth MJ, MacCoss MJ. Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry. Analytical Chemistry. 82: 833-41. PMID 20039681 DOI: 10.1021/Ac901801B |
0.834 |
|
| 2010 |
Hsieh EJ, Hoopmann MR, MacLean B, MacCoss MJ. Comparison of database search strategies for high precursor mass accuracy MS/MS data Journal of Proteome Research. 9: 1138-1143. PMID 19938873 DOI: 10.1021/Pr900816A |
0.834 |
|
| 2010 |
Aagaard JE, Vacquier VD, MacCoss MJ, Swanson WJ. ZP domain proteins in the abalone egg coat include a paralog of VERL under positive selection that binds lysin and 18-kDa sperm proteins. Molecular Biology and Evolution. 27: 193-203. PMID 19767347 DOI: 10.1093/Molbev/Msp221 |
0.334 |
|
| 2010 |
Li Q, MacCoss MJ, Stephens M. A nested mixture model for protein identification using mass spectrometry Annals of Applied Statistics. 4: 962-987. DOI: 10.1214/09-Aoas316 |
0.396 |
|
| 2010 |
Wooden J, Finney G, Maccoss M, Gilligan D. Comparative proteomics reveals deficiency of NHE-1 (SLC9A1) in RBCs from beta-adducin knockout mice Transfusion Clinique Et Biologique. 17: 200. DOI: 10.1016/J.TRACLI.2010.06.012 |
0.743 |
|
| 2009 |
Second TP, Blethrow JD, Schwartz JC, Merrihew GE, MacCoss MJ, Swaney DL, Russell JD, Coon JJ, Zabrouskov V. Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures. Analytical Chemistry. 81: 7757-65. PMID 19689114 DOI: 10.1021/Ac901278Y |
0.501 |
|
| 2009 |
James RG, Biechele TL, Conrad WH, Camp ND, Fass DM, Major MB, Sommer K, Yi X, Roberts BS, Cleary MA, Arthur WT, MacCoss M, Rawlings DJ, Haggarty SJ, Moon RT. Bruton's tyrosine kinase revealed as a negative regulator of Wnt-beta-catenin signaling. Science Signaling. 2: ra25. PMID 19471023 DOI: 10.1126/Scisignal.2000230 |
0.486 |
|
| 2009 |
Dai DF, Santana LF, Vermulst M, Tomazela DM, Emond MJ, MacCoss MJ, Gollahon K, Martin GM, Loeb LA, Ladiges WC, Rabinovitch PS. Overexpression of catalase targeted to mitochondria attenuates murine cardiac aging. Circulation. 119: 2789-97. PMID 19451351 DOI: 10.1161/Circulationaha.108.822403 |
0.648 |
|
| 2009 |
Dean MD, Clark NL, Findlay GD, Karn RC, Yi X, Swanson WJ, MacCoss MJ, Nachman MW. Proteomics and comparative genomic investigations reveal heterogeneity in evolutionary rate of male reproductive proteins in mice (Mus domesticus). Molecular Biology and Evolution. 26: 1733-43. PMID 19420050 DOI: 10.1093/Molbev/Msp094 |
0.532 |
|
| 2009 |
Findlay GD, MacCoss MJ, Swanson WJ. Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila. Genome Research. 19: 886-96. PMID 19411605 DOI: 10.1101/Gr.089391.108 |
0.304 |
|
| 2009 |
Prakash A, Tomazela DM, Frewen B, MacLean B, Merrihew G, Peterman S, MacCoss MJ. Expediting the development of targeted SRM assays: Using data from shotgun proteomics to automate method development Journal of Proteome Research. 8: 2733-2739. PMID 19326923 DOI: 10.1021/Pr801028B |
0.766 |
|
| 2009 |
Hoopmann MR, Merrihew GE, Von Haller PD, MacCoss MJ. Post analysis data acquisition for the Iterative MS/MS sampling of proteomics mixtures Journal of Proteome Research. 8: 1870-1875. PMID 19256536 DOI: 10.1021/Pr800828P |
0.722 |
|
| 2009 |
Findlay GD, Yi X, MacCoss MJ, Swanson WJ. Correction: Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating Plos Biology. 7. DOI: 10.1371/Annotation/2177Fe97-A5Bc-45D5-8Fa9-5C3639Dda4F3 |
0.485 |
|
| 2008 |
Major MB, Roberts BS, Berndt JD, Marine S, Anastas J, Chung N, Ferrer M, Yi X, Stoick-Cooper CL, von Haller PD, Kategaya L, Chien A, Angers S, MacCoss M, Cleary MA, et al. New regulators of Wnt/beta-catenin signaling revealed by integrative molecular screening. Science Signaling. 1: ra12. PMID 19001663 DOI: 10.1126/Scisignal.2000037 |
0.525 |
|
| 2008 |
Kline KG, Frewen B, Bristow MR, Maccoss MJ, Wu CC. High quality catalog of proteotypic peptides from human heart. Journal of Proteome Research. 7: 5055-61. PMID 18803417 DOI: 10.1021/Pr800239E |
0.472 |
|
| 2008 |
Eng JK, Fischer B, Grossmann J, MacCoss MJ. A fast SEQUEST cross correlation algorithm Journal of Proteome Research. 7: 4598-4602. PMID 18774840 DOI: 10.1021/Pr800420S |
0.321 |
|
| 2008 |
Canterbury JD, Yi X, Hoopmann MR, MacCoss MJ. Assessing the dynamic range and peak capacity of nanoflow LC-FAIMS-MS on an ion trap mass spectrometer for proteomics Analytical Chemistry. 80: 6888-6897. PMID 18693747 DOI: 10.1021/Ac8004988 |
0.76 |
|
| 2008 |
Findlay GD, Yi X, Maccoss MJ, Swanson WJ. Proteomics reveals novel Drosophila seminal fluid proteins transferred at mating. Plos Biology. 6: e178. PMID 18666829 DOI: 10.1371/Journal.Pbio.0060178 |
0.555 |
|
| 2008 |
Merrihew GE, Davis C, Ewing B, Williams G, Käll L, Frewen BE, Noble WS, Green P, Thomas JH, MacCoss MJ. Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations. Genome Research. 18: 1660-9. PMID 18653799 DOI: 10.1101/Gr.077644.108 |
0.662 |
|
| 2008 |
Klammer AA, Reynolds SM, Bilmes JA, MacCoss MJ, Noble WS. Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification. Bioinformatics (Oxford, England). 24: i348-56. PMID 18586734 DOI: 10.1093/bioinformatics/btn189 |
0.834 |
|
| 2008 |
Park CY, Klammer AA, Käll L, MacCoss MJ, Noble WS. Rapid and accurate peptide identification from tandem mass spectra. Journal of Proteome Research. 7: 3022-7. PMID 18505281 DOI: 10.1021/Pr800127Y |
0.829 |
|
| 2008 |
Finney GL, Blackler AR, Hoopmann MR, Canterbury JD, Wu CC, MacCoss MJ. Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution μLC-MS data Analytical Chemistry. 80: 961-971. PMID 18189369 DOI: 10.1021/Ac701649E |
0.824 |
|
| 2008 |
Käll L, Storey JD, MacCoss MJ, Noble WS. Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. Journal of Proteome Research. 7: 29-34. PMID 18067246 DOI: 10.1021/Pr700600N |
0.611 |
|
| 2008 |
Käll L, Storey JD, MacCoss MJ, Noble WS. Posterior error probabilities and false discovery rates: two sides of the same coin. Journal of Proteome Research. 7: 40-4. PMID 18052118 DOI: 10.1021/Pr700739D |
0.55 |
|
| 2008 |
Wooden JM, Finney GL, Maccoss MJ, Peters LL, Gilligan DM. Comparative Profiling of Red Blood Cells from the Beta-Adducin Knockout Mouse Model of Hemolytic Anemia Using Label Free Differential Proteomics Blood. 112: 3852-3852. DOI: 10.1182/Blood.V112.11.3852.3852 |
0.802 |
|
| 2007 |
Frewen B, MacCoss MJ. Using BiblioSpec for creating and searching tandem MS peptide libraries. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 13.7. PMID 18428681 DOI: 10.1002/0471250953.Bi1307S20 |
0.422 |
|
| 2007 |
Käll L, Canterbury JD, Weston J, Noble WS, MacCoss MJ. Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nature Methods. 4: 923-5. PMID 17952086 DOI: 10.1038/Nmeth1113 |
0.627 |
|
| 2007 |
Mayor T, Graumann J, Bryan J, MacCoss MJ, Deshaies RJ. Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway. Molecular & Cellular Proteomics : McP. 6: 1885-95. PMID 17644757 DOI: 10.1074/Mcp.M700264-Mcp200 |
0.344 |
|
| 2007 |
Clark NL, Findlay GD, Yi X, MacCoss MJ, Swanson WJ. Duplication and selection on abalone sperm lysin in an allopatric population. Molecular Biology and Evolution. 24: 2081-90. PMID 17630281 DOI: 10.1093/Molbev/Msm137 |
0.543 |
|
| 2007 |
Klammer AA, Yi X, MacCoss MJ, Noble WS. Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions. Analytical Chemistry. 79: 6111-8. PMID 17622186 DOI: 10.1021/Ac070262K |
0.819 |
|
| 2007 |
Hoopmann MR, Finney GL, MacCoss MJ. High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometry. Analytical Chemistry. 79: 5620-32. PMID 17580982 DOI: 10.1021/Ac0700833 |
0.837 |
|
| 2007 |
Major MB, Camp ND, Berndt JD, Yi X, Goldenberg SJ, Hubbert C, Biechele TL, Gingras AC, Zheng N, Maccoss MJ, Angers S, Moon RT. Wilms tumor suppressor WTX negatively regulates WNT/beta-catenin signaling. Science (New York, N.Y.). 316: 1043-6. PMID 17510365 DOI: 10.1126/Science/1141515 |
0.496 |
|
| 2007 |
Wu CC, MacCoss MJ. Quantitative proteomic analysis of mammalian organisms using metabolically labeled tissues. Methods in Molecular Biology (Clifton, N.J.). 359: 191-201. PMID 17484119 DOI: 10.1007/978-1-59745-255-7_13 |
0.379 |
|
| 2007 |
MacCoss MJ, Wu CC. Computational analysis of quantitative proteomics data using stable isotope labeling. Methods in Molecular Biology (Clifton, N.J.). 359: 177-89. PMID 17484118 DOI: 10.1007/978-1-59745-255-7_12 |
0.374 |
|
| 2007 |
Eakin CM, Maccoss MJ, Finney GL, Klevit RE. Estrogen receptor alpha is a putative substrate for the BRCA1 ubiquitin ligase. Proceedings of the National Academy of Sciences of the United States of America. 104: 5794-9. PMID 17392432 DOI: 10.1073/Pnas.0610887104 |
0.756 |
|
| 2007 |
Wooden JM, Finney GL, MacCoss MJ, Peters LL, Gilligan DM. Proteomic Analysis of RBC Ghosts from the Beta-Adducin and Protein 4.2 Knock-Out Mouse Models of Inherited Hemolytic Anemia. Blood. 110: 1728-1728. DOI: 10.1182/Blood.V110.11.1728.1728 |
0.805 |
|
| 2007 |
Klammer AA, Yi X, MacCoss MJ, Noble WS. Peptide retention time prediction yields improved tandem mass spectrum identification for diverse chromatography conditions Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4453: 459-472. |
0.541 |
|
| 2006 |
Aagaard JE, Yi X, MacCoss MJ, Swanson WJ. Rapidly evolving zona pellucida domain proteins are a major component of the vitelline envelope of abalone eggs. Proceedings of the National Academy of Sciences of the United States of America. 103: 17302-7. PMID 17085584 DOI: 10.1073/Pnas.0603125103 |
0.543 |
|
| 2006 |
Angers S, Li T, Yi X, MacCoss MJ, Moon RT, Zheng N. Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery. Nature. 443: 590-3. PMID 16964240 DOI: 10.1038/Nature05175 |
0.53 |
|
| 2006 |
Frewen BE, Merrihew GE, Wu CC, Noble WS, MacCoss MJ. Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries. Analytical Chemistry. 78: 5678-84. PMID 16906711 DOI: 10.1021/Ac060279N |
0.646 |
|
| 2006 |
Angers S, Thorpe CJ, Biechele TL, Goldenberg SJ, Zheng N, MacCoss MJ, Moon RT. The KLHL12-Cullin-3 ubiquitin ligase negatively regulates the Wnt-beta-catenin pathway by targeting Dishevelled for degradation. Nature Cell Biology. 8: 348-57. PMID 16547521 DOI: 10.1038/Ncb1381 |
0.304 |
|
| 2006 |
Klammer AA, MacCoss MJ. Effects of modified digestion schemes on the identification of proteins from complex mixtures. Journal of Proteome Research. 5: 695-700. PMID 16512685 DOI: 10.1021/Pr050315J |
0.837 |
|
| 2006 |
Blackler AR, Klammer AA, MacCoss MJ, Wu CC. Quantitative comparison of proteomic data quality between a 2D and 3D quadrupole ion trap. Analytical Chemistry. 78: 1337-44. PMID 16478131 DOI: 10.1021/Ac051486A |
0.804 |
|
| 2006 |
Wooden JM, Finney G, MacCoss M, Gilligan DM. Comprehensive Analysis of Murine and Human RBC Ghost Proteomes. Blood. 108: 1569-1569. DOI: 10.1182/Blood.V108.11.1569.1569 |
0.8 |
|
| 2005 |
Klammer AA, Wu CC, MacCoss MJ, Noble WS. Peptide charge state determination for low-resolution tandem mass spectra. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 175-85. PMID 16447975 DOI: 10.1109/CSB.2005.44 |
0.827 |
|
| 2005 |
MacCoss MJ, Wu CC, Matthews DE, Yates JR. Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides Analytical Chemistry. 77: 7646-7653. PMID 16316172 DOI: 10.1021/Ac0508393 |
0.608 |
|
| 2005 |
MacCoss MJ, Matthews DE. Qantitative MS for proteomics: Teaching a new dog old tricks Analytical Chemistry. 77: 294 A-302 A. PMID 16134292 DOI: 10.1021/Ac053431E |
0.54 |
|
| 2005 |
MacCoss MJ. Computational analysis of shotgun proteomics data Current Opinion in Chemical Biology. 9: 88-94. PMID 15701459 DOI: 10.1016/J.Cbpa.2004.12.010 |
0.455 |
|
| 2004 |
Wu CC, MacCoss MJ, Howell KE, Matthews DE, Yates JR. Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis Analytical Chemistry. 76: 4951-4959. PMID 15373428 DOI: 10.1021/Ac049208J |
0.576 |
|
| 2004 |
McDonald WH, Tabb DL, Sadygov RG, MacCoss MJ, Venable J, Graumann J, Johnson JR, Cociorva D, Yates JR. MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. Rapid Communications in Mass Spectrometry : Rcm. 18: 2162-8. PMID 15317041 DOI: 10.1002/Rcm.1603 |
0.389 |
|
| 2004 |
Anderson LB, Ouellette AJ, Eaton-Rye J, Maderia M, MacCoss MJ, Yates JR, Barry BA. Evidence for a post-translational modification, aspartyl aldehyde, in a photosynthetic membrane protein. Journal of the American Chemical Society. 126: 8399-405. PMID 15237995 DOI: 10.1021/Ja0478781 |
0.392 |
|
| 2004 |
Wu CC, MacCoss MJ, Mardones G, Finnigan C, Mogelsvang S, Yates JR, Howell KE. Organellar proteomics reveals Golgi arginine dimethylation Molecular Biology of the Cell. 15: 2907-2919. PMID 15047867 DOI: 10.1091/Mbc.E04-02-0101 |
0.399 |
|
| 2003 |
MacCoss MJ, Wu CC, Liu H, Sadygov R, Yates JR. A Correlation Algorithm for the Automated Quantitative Analysis of Shotgun Proteomics Data Analytical Chemistry. 75: 6912-6921. PMID 14670053 DOI: 10.1021/Ac034790H |
0.492 |
|
| 2003 |
Tabb DL, MacCoss MJ, Wu CC, Anderson SD, Yates JR. Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utility. Analytical Chemistry. 75: 2470-7. PMID 12918992 DOI: 10.1021/Ac026424O |
0.404 |
|
| 2003 |
Wu CC, MacCoss MJ, Howell KE, Yates JR. A method for the comprehensive proteomic analysis of membrane proteins Nature Biotechnology. 21: 532-538. PMID 12692561 DOI: 10.1038/Nbt819 |
0.347 |
|
| 2002 |
Sadygov RG, Eng J, Durr E, Saraf A, McDonald H, MacCoss MJ, Yates JR. Code developments to improve the efficiency of automated MS/MS spectra interpretation. Journal of Proteome Research. 1: 211-5. PMID 12645897 DOI: 10.1021/Pr015514R |
0.38 |
|
| 2002 |
MacCoss MJ, Wu CC, Yates JR. Probability-based validation of protein identifications using a modified SEQUEST algorithm. Analytical Chemistry. 74: 5593-9. PMID 12433093 DOI: 10.1021/Ac025826T |
0.441 |
|
| 2002 |
Anderson LB, Maderia M, Ouellette AJ, Putnam-Evans C, Higgins L, Krick T, MacCoss MJ, Lim H, Yates JR, Barry BA. Posttranslational modifications in the CP43 subunit of photosystem II. Proceedings of the National Academy of Sciences of the United States of America. 99: 14676-81. PMID 12417747 DOI: 10.1073/Pnas.232591599 |
0.379 |
|
| 2002 |
Wu CC, MacCoss MJ. Shotgun proteomics: Tools for the analysis of complex biological systems Current Opinion in Molecular Therapeutics. 4: 242-250. PMID 12139310 |
0.345 |
|
| 2002 |
MacCoss MJ, McDonald WH, Saraf A, Sadygov R, Clark JM, Tasto JJ, Gould KL, Wolters D, Washburn M, Weiss A, Clark JI, Yates JR. Shotgun identification of protein modifications from protein complexes and lens tissue. Proceedings of the National Academy of Sciences of the United States of America. 99: 7900-5. PMID 12060738 DOI: 10.1073/Pnas.122231399 |
0.438 |
|
| 2001 |
MacCoss MJ, Yates JR. Proteomics: Analytical tools and techniques Current Opinion in Clinical Nutrition and Metabolic Care. 4: 369-375. PMID 11568497 DOI: 10.1097/00075197-200109000-00006 |
0.39 |
|
| 2001 |
Maccoss MJ, Toth MJ, Matthews DE. Evaluation and optimization of ion-current ratio measurements by selected-ion-monitoring mass spectrometry Analytical Chemistry. 73: 2976-2984. PMID 11467543 DOI: 10.1021/Ac010041T |
0.482 |
|
| 2001 |
Toth MJ, MacCoss MJ, Poehlman ET, Matthews DE. Recovery of 13CO2 from infused [1-13C]leucine and [1,2-13C2]leucine in healthy humans American Journal of Physiology - Endocrinology and Metabolism. 281: E233-E241. PMID 11440898 DOI: 10.1152/Ajpendo.2001.281.2.E233 |
0.407 |
|
| 2001 |
MacCoss MJ, Fukagawa NK, Matthews DE. Measurement of intracellular sulfur amino acid metabolism in humans American Journal of Physiology - Endocrinology and Metabolism. 280: E947-E955. PMID 11350776 DOI: 10.1152/Ajpendo.2001.280.6.E947 |
0.422 |
|
| 2001 |
Toth MJ, Poehlman ET, Matthews DE, Tchernof A, MacCoss MJ. Effects of estradiol and progesterone on body composition, protein synthesis, and lipoprotein lipase in rats American Journal of Physiology - Endocrinology and Metabolism. 280: E496-E501. PMID 11171605 DOI: 10.1152/Ajpendo.2001.280.3.E496 |
0.43 |
|
| 1999 |
MacCoss MJ, Fukagawa NK, Matthews DE. Measurement of homocysteine concentrations and stable isotope tracer enrichments in human plasma Analytical Chemistry. 71: 4527-4533. PMID 10546531 DOI: 10.1021/Ac990541A |
0.463 |
|
| 1995 |
Griffin PR, MacCoss MJ, Eng JK, Blevins RA, Aaronson JS, Yates JR. Direct database searching with MALDI-PSD spectra of peptides Rapid Communications in Mass Spectrometry. 9: 1546-1551. PMID 8652878 |
0.336 |
|
| Show low-probability matches. |