Maria Fyta - Publications

Affiliations: 
University of Stuttgart, Germany 

44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Díaz Carral Á, Ostertag M, Fyta M. Deep learning for nanopore ionic current blockades. The Journal of Chemical Physics. 154: 044111. PMID 33514094 DOI: 10.1063/5.0037938  0.01
2020 de Souza FAL, Sivaraman G, Fyta M, Scheicher RH, Scopel WL, Amorim RG. Electrically sensing Hachimoji DNA nucleotides through a hybrid graphene/-BN nanopore. Nanoscale. PMID 32857078 DOI: 10.1039/D0Nr04363J  1
2020 Maier FC, Fyta M. Functionalized Nanogap for DNA Read-Out: Nucleotide Rotation and Current-Voltage Curves. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 32721095 DOI: 10.1002/Cphc.202000391  0.01
2019 Dou M, Maier FC, Fyta M. The influence of a solvent on the electronic transport across diamondoid-functionalized biosensing electrodes. Nanoscale. PMID 31317158 DOI: 10.1039/C9Nr03235E  0.01
2019 Partovi-Azar P, Sarap CS, Fyta M. In silico complexes of amino-acids and diamondoids. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 31287610 DOI: 10.1002/Cphc.201900394  0.04
2019 Liu D, Fyta M. Hybrids made of defective nanodiamonds interacting with DNA nucleobases. Nanotechnology. 30: 065601. PMID 30524020 DOI: 10.1088/1361-6528/Aaf127  0.01
2018 Cruz-León S, Vázquez-Mayagoitia A, Melchionna S, Schwierz N, Fyta M. Coarse-Grained Double-Stranded RNA Model from Quantum-Mechanical Calculations. The Journal of Physical Chemistry. B. 122: 7915-7928. PMID 30044622 DOI: 10.1021/Acs.Jpcb.8B03566  1
2018 Sarap CS, Adhikari B, Meng S, Uhlig F, Fyta M. Optical Properties of Single- and Double-Functionalized Small Diamondoids. The Journal of Physical Chemistry. A. PMID 29488764 DOI: 10.1021/Acs.Jpca.7B12519  1
2017 Belyanchikov MA, Zhukova ES, Tretiak S, Zhugayevych A, Dressel M, Uhlig F, Smiatek J, Fyta M, Thomas VG, Gorshunov BP. Vibrational states of nano-confined water molecules in beryl investigated by first-principles calculations and optical experiments. Physical Chemistry Chemical Physics : Pccp. PMID 29125156 DOI: 10.1039/C7Cp06472A  0.01
2017 Datar AV, Fyta M, Marconi UMB, Melchionna S. Electrokinetic Lattice Boltzmann Solver Coupled to Molecular Dynamics: Application to Polymer Translocation. Langmuir : the Acs Journal of Surfaces and Colloids. 33: 11635-11645. PMID 28793765 DOI: 10.1021/Acs.Langmuir.7B01997  1
2017 Kobayashi T, Reid JESJ, Shimizu S, Fyta M, Smiatek J. The properties of residual water molecules in ionic liquids: a comparison between direct and inverse Kirkwood-Buff approaches. Physical Chemistry Chemical Physics : Pccp. PMID 28715012 DOI: 10.1039/C7Cp03717A  0.01
2016 Adhikari B, Sivaraman G, Fyta M. Diamondoid-based molecular junctions: a computational study. Nanotechnology. 27: 485207. PMID 27819796 DOI: 10.1088/0957-4484/27/48/485207  1
2016 Sivaraman G, Amorim RG, Scheicher RH, Fyta M. Benchmark investigation of diamondoid-functionalized electrodes for nanopore DNA sequencing. Nanotechnology. 27: 414002. PMID 27607107 DOI: 10.1088/0957-4484/27/41/414002  1
2016 León SC, Prentiss M, Fyta M. Binding energies of nucleobase complexes: Relevance to homology recognition of DNA. Physical Review. E. 93: 062410. PMID 27415301 DOI: 10.1103/Physreve.93.062410  0.01
2016 Sivaraman G, Amorim RG, Scheicher RH, Fyta M. Diamondoid-functionalized gold nanogaps as sensors for natural, mutated, and epigenetically modified DNA nucleotides. Nanoscale. PMID 27121677 DOI: 10.1039/C6Nr00500D  1
2016 Adhikari B, Meng S, Fyta M. Carbene-mediated self-assembly of diamondoids on metal surfaces. Nanoscale. 8: 8966-75. PMID 27074198 DOI: 10.1039/C5Nr08709K  1
2016 Natterer A, Adhikari B, Fyta M. Complexes of carbene-functionalized diamondoids and metal atoms: Electronic properties Journal of Organometallic Chemistry. 815: 8-15. DOI: 10.1016/J.Jorganchem.2016.04.024  1
2015 Fyta M. Threading DNA through nanopores for biosensing applications. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 27: 273101. PMID 26061408 DOI: 10.1088/0953-8984/27/27/273101  0.01
2015 Adhikari B, Fyta M. Towards double-functionalized small diamondoids: selective electronic band-gap tuning. Nanotechnology. 26: 035701. PMID 25549002 DOI: 10.1088/0957-4484/26/3/035701  1
2015 Adhikari B, Fyta M. Towards double-functionalized small diamondoids: Selective electronic band-gap tuning Nanotechnology. 26. DOI: 10.1088/0957-4484/26/3/035701  1
2014 Maier FC, Sivaraman G, Fyta M. The role of a diamondoid as a hydrogen donor or acceptor in probing DNA nucleobases. The European Physical Journal. E, Soft Matter. 37: 95. PMID 25339284 DOI: 10.1140/Epje/I2014-14095-0  1
2014 Maier FC, Fyta M. Type-dependent identification of DNA nucleobases by using diamondoids. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 15: 3466-75. PMID 25145625 DOI: 10.1002/Cphc.201402335  0.01
2014 Fyta M. Stable boron nitride diamondoids as nanoscale materials. Nanotechnology. 25: 365601. PMID 25121522 DOI: 10.1088/0957-4484/25/36/365601  0.01
2014 Sivaraman G, Fyta M. Chemically modified diamondoids as biosensors for DNA. Nanoscale. 6: 4225-32. PMID 24608602 DOI: 10.1039/C3Nr06417D  1
2013 Mamatkulov S, Fyta M, Netz RR. Force fields for divalent cations based on single-ion and ion-pair properties. The Journal of Chemical Physics. 138: 024505. PMID 23320702 DOI: 10.1063/1.4772808  1
2012 Hsu CW, Fyta M, Lakatos G, Melchionna S, Kaxiras E. Ab initio determination of coarse-grained interactions in double-stranded DNA. The Journal of Chemical Physics. 137: 105102. PMID 22979896 DOI: 10.1063/1.4748105  1
2012 Mathioudakis C, Fyta M. Disorder and optical gaps in strained dense amorphous carbon and diamond nanocomposites. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 24: 205502. PMID 22532117 DOI: 10.1088/0953-8984/24/20/205502  0.28
2012 Fyta M, Netz RR. Ionic force field optimization based on single-ion and ion-pair solvation properties: going beyond standard mixing rules. The Journal of Chemical Physics. 136: 124103. PMID 22462831 DOI: 10.1063/1.3693330  1
2010 Fyta M, Kalcher I, Dzubiella J, Vrbka L, Netz RR. Ionic force field optimization based on single-ion and ion-pair solvation properties. The Journal of Chemical Physics. 132: 024911. PMID 20095713 DOI: 10.1063/1.3292575  1
2009 Melchionna S, Bernaschi M, Fyta M, Kaxiras E, Succi S. Quantized biopolymer translocation through nanopores: departure from simple scaling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 030901. PMID 19391890 DOI: 10.1103/Physreve.79.030901  1
2009 Fyta M, Melchionna S, Bernaschi M, Kaxiras E, Succi S. Numerical simulation of conformational variability in biopolymer translocation through wide nanopores Journal of Statistical Mechanics: Theory and Experiment. 2009. DOI: 10.1088/1742-5468/2009/06/P06009  1
2009 Bernaschi M, Melchionna S, Succi S, Fyta M, Kaxiras E, Sircar JK. MUPHY: A parallel MUlti PHYsics/scale code for high performance bio-fluidic simulations Computer Physics Communications. 180: 1495-1502. DOI: 10.1016/J.Cpc.2009.04.001  1
2008 Fyta M, Melchionna S, Succi S, Kaxiras E. Hydrodynamic correlations in the translocation of a biopolymer through a nanopore: theory and multiscale simulations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 036704. PMID 18851186 DOI: 10.1103/Physreve.78.036704  1
2008 Bernaschi M, Melchionna S, Succi S, Fyta M, Kaxiras E. Quantized current blockade and hydrodynamic correlations in biopolymer translocation through nanopores: evidence from multiscale simulations. Nano Letters. 8: 1115-9. PMID 18302329 DOI: 10.1021/Nl073251F  1
2008 Fyta M, Sircar J, Kaxiras E, Melchionna S, Bernaschi M, Succi S. Parallel multiscale modeling of biopolymer dynamics with hydrodynamic correlations International Journal For Multiscale Computational Engineering. 6: 25-37. DOI: 10.1615/Intjmultcompeng.V6.I1.30  1
2008 Fyta M, Kaxiras E, Melchionna S, Succi S. Multiscale simulation of nanobiological flows Computing in Science and Engineering. 10: 10-19. DOI: 10.1109/MCSE.2008.100  1
2008 Bernaschi M, Succi S, Fyta M, Kaxiras E, Melchionna S, Sircar JK. MUPHY: A parallel high performance MUlti PHYsics/scale code Ipdps Miami 2008 - Proceedings of the 22nd Ieee International Parallel and Distributed Processing Symposium, Program and Cd-Rom. DOI: 10.1109/IPDPS.2008.4536464  1
2008 Gali A, Fyta M, Kaxiras E. Erratum: Ab initio supercell calculations on nitrogen-vacancy center in diamond: Electronic structure and hyperfine tensors [Phys. Rev. B 77, 155206 (2008)] Physical Review B. 78: 239902. DOI: 10.1103/Physrevb.78.239902  1
2008 Gali A, Fyta M, Kaxiras E. Ab initio supercell calculations on nitrogen-vacancy center in diamond: Electronic structure and hyperfine tensors Physical Review B - Condensed Matter and Materials Physics. 77. DOI: 10.1103/Physrevb.77.155206  1
2007 Melchionna S, Fyta MG, Kaxiras E, Succi S. Exploring DNA translocation through a nanopore via a multiscale lattice-Boltzmann molecular-dynamics methodology International Journal of Modern Physics C. 18: 685-692. DOI: 10.1142/S0129183107010942  1
2007 Barnett RL, Maragakis P, Turner A, Fyta M, Kaxiras E. Multiscale model of electronic behavior and localization in stretched dry DNA Journal of Materials Science. 42: 8894-8903. DOI: 10.1007/S10853-007-1901-6  1
2006 Fyta MG, Remediakis IN, Kelires PC, Papaconstantopoulos DA. Insights into the fracture mechanisms and strength of amorphous and nanocomposite carbon. Physical Review Letters. 96: 185503. PMID 16712372 DOI: 10.1103/Physrevlett.96.185503  1
2006 Fyta MG, Melchionna S, Kaxiras E, Succi S. Multiscale coupling of molecular dynamics and hydrodynamics: Application to DNA translocation through a nanopore Multiscale Modeling and Simulation. 5: 1156-1173. DOI: 10.1137/060660576  1
2000 Fyta M, Kelires PC. Stress variations near surfaces in diamond-like amorphous carbon Journal of Non-Crystalline Solids. 266: 760-764. DOI: 10.1016/S0022-3093(99)00810-8  1
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