| Year |
Citation |
Score |
| 2024 |
Zhang W, Chen H, Sobczyk M, Krochmal D, Katanski CD, Assari M, Chen A, Hou Y, Dai Q, Pan T. Quantification of tRNA mA modification by templated-ligation qPCR. Rna (New York, N.Y.). PMID 38471794 DOI: 10.1261/rna.079895.123 |
0.313 |
|
| 2022 |
Watkins CP, Zhang W, Wylder AC, Katanski CD, Pan T. A multiplex platform for small RNA sequencing elucidates multifaceted tRNA stress response and translational regulation. Nature Communications. 13: 2491. PMID 35513407 DOI: 10.1038/s41467-022-30261-3 |
0.355 |
|
| 2022 |
Peña N, Zhang W, Watkins C, Halucha M, Alshammary H, Hernandez MM, Liu WC, Albrecht RA, Garcia-Sastre A, Simon V, Katanski C, Pan T. Profiling Selective Packaging of Host RNA and Viral RNA Modification in SARS-CoV-2 Viral Preparations. Frontiers in Cell and Developmental Biology. 10: 768356. PMID 35186917 DOI: 10.3389/fcell.2022.768356 |
0.325 |
|
| 2021 |
Zhang W, Pan T. Pseudouridine RNA modification detection and quantification by RT-PCR. Methods (San Diego, Calif.). PMID 34020036 DOI: 10.1016/j.ymeth.2021.05.010 |
0.326 |
|
| 2020 |
Chen M, Kuhle B, Diedrich J, Liu Z, Moresco JJ, Yates Iii JR, Pan T, Yang XL. Cross-editing by a tRNA synthetase allows vertebrates to abundantly express mischargeable tRNA without causing mistranslation. Nucleic Acids Research. PMID 32484512 DOI: 10.1093/Nar/Gkaa469 |
0.326 |
|
| 2020 |
Zhang W, Xu R, Matuszek Ż, Cai Z, Pan T. Detection and quantification of glycosylated queuosine modified tRNAs by acid denaturing and APB gels. Rna (New York, N.Y.). PMID 32439717 DOI: 10.1261/Rna.075556.120 |
0.308 |
|
| 2020 |
Eckwahl M, Xu R, Michalkiewicz J, Zhang W, Patel P, Cai Z, Pan T. 5-methylcytosine RNA modifications promote retrovirus replication in an ALYREF reader protein-dependent manner. Journal of Virology. PMID 32321818 DOI: 10.1128/Jvi.00544-20 |
0.436 |
|
| 2020 |
Zhang J, Lu R, Zhang Y, Matuszek Ż, Zhang W, Xia Y, Pan T, Sun J. tRNA Queuosine Modification Enzyme Modulates the Growth and Microbiome Recruitment to Breast Tumors. Cancers. 12. PMID 32182756 DOI: 10.3390/Cancers12030628 |
0.34 |
|
| 2020 |
Zhang W, Pan T. A dual function PUS enzyme. Nature Chemical Biology. 16: 107-108. PMID 31974524 DOI: 10.1038/S41589-019-0450-Z |
0.439 |
|
| 2019 |
Zhou KI, Shi H, Lyu R, Wylder AC, Matuszek Ż, Pan JN, He C, Parisien M, Pan T. Regulation of Co-transcriptional Pre-mRNA Splicing by mA through the Low-Complexity Protein hnRNPG. Molecular Cell. PMID 31445886 DOI: 10.1016/J.Molcel.2019.07.005 |
0.424 |
|
| 2019 |
Zhang W, Eckwahl M, Zhou K, Pan T. Sensitive and quantitative probing of pseudouridine modification in mRNA and long non-coding RNA. Rna (New York, N.Y.). PMID 31227565 DOI: 10.1261/Rna.072124.119 |
0.415 |
|
| 2019 |
Ma H, Wang X, Cai J, Dai Q, Natchiar SK, Lv R, Chen K, Lu Z, Chen H, Shi YG, Lan F, Fan J, Klaholz BP, Pan T, Shi Y, et al. Publisher Correction: N-Methyladenosine methyltransferase ZCCHC4 mediates ribosomal RNA methylation. Nature Chemical Biology. PMID 30737498 DOI: 10.1038/S41589-019-0233-6 |
0.311 |
|
| 2019 |
Ma H, Wang X, Cai J, Dai Q, Natchiar SK, Lv R, Chen K, Lu Z, Chen H, Shi YG, Lan F, Fan J, Klaholz BP, Pan T, Shi Y, et al. NMethyladenosine methyltransferase ZCCHC4 mediates ribosomal RNA methylation. Nature Chemical Biology. 15: 88-94. PMID 30531910 DOI: 10.1038/S41589-018-0184-3 |
0.44 |
|
| 2018 |
Schwartz MH, Wang H, Pan JN, Clark WC, Cui S, Eckwahl MJ, Pan DW, Parisien M, Owens SM, Cheng BL, Martinez K, Xu J, Chang EB, Pan T, Eren AM. Microbiome characterization by high-throughput transfer RNA sequencing and modification analysis. Nature Communications. 9: 5353. PMID 30559359 DOI: 10.1038/S41467-018-07675-Z |
0.423 |
|
| 2018 |
Richter U, Evans ME, Clark WC, Marttinen P, Shoubridge EA, Suomalainen A, Wredenberg A, Wedell A, Pan T, Battersby BJ. RNA modification landscape of the human mitochondrial tRNA regulates protein synthesis. Nature Communications. 9: 3966. PMID 30262910 DOI: 10.1038/S41467-018-06471-Z |
0.349 |
|
| 2018 |
Xu J, Wang Z, Jin X, Li L, Pan T. Methods for Identification of Protein-RNA Interaction. Advances in Experimental Medicine and Biology. 1094: 117-126. PMID 30191493 DOI: 10.1007/978-981-13-0719-5_12 |
0.436 |
|
| 2018 |
Wang X, Matuszek Z, Huang Y, Parisien M, Dai Q, Clark WC, Schwartz MH, Pan T. Queuosine modification protects cognate tRNAs against ribonuclease cleavage. Rna (New York, N.Y.). PMID 29970597 DOI: 10.1261/Rna.067033.118 |
0.346 |
|
| 2018 |
Jiang C, Ding N, Li J, Jin X, Li L, Pan T, Huo C, Li Y, Xu J, Li X. Landscape of the long non-coding RNA transcriptome in human heart. Briefings in Bioinformatics. PMID 29939204 DOI: 10.1093/Bib/Bby052 |
0.334 |
|
| 2018 |
Zhou KI, Clark WC, Pan DW, Eckwahl MJ, Dai Q, Pan T. Pseudouridines have context-dependent mutation and stop rates in high-throughput sequencing. Rna Biology. 1-29. PMID 29683381 DOI: 10.1080/15476286.2018.1462654 |
0.378 |
|
| 2018 |
Zhou KI, Pan T. An additional class of mA readers. Nature Cell Biology. 20: 230-232. PMID 29476150 DOI: 10.1038/S41556-018-0046-Y |
0.374 |
|
| 2018 |
Pan T. Modifications and functional genomics of human transfer RNA. Cell Research. PMID 29463900 DOI: 10.1038/S41422-018-0013-Y |
0.467 |
|
| 2018 |
Li Y, Li L, Wang Z, Pan T, Sahni N, Jin X, Wang G, Li J, Zheng X, Zhang Y, Xu J, Yi S, Li X. LncMAP: Pan-cancer atlas of long noncoding RNA-mediated transcriptional network perturbations. Nucleic Acids Research. PMID 29325141 DOI: 10.1093/Nar/Gkx1311 |
0.341 |
|
| 2017 |
Roundtree IA, Evans ME, Pan T, He C. Dynamic RNA Modifications in Gene Expression Regulation. Cell. 169: 1187-1200. PMID 28622506 DOI: 10.1016/J.Cell.2017.05.045 |
0.439 |
|
| 2017 |
Evans ME, Clark WC, Zheng G, Pan T. Determination of tRNA aminoacylation levels by high-throughput sequencing. Nucleic Acids Research. PMID 28586482 DOI: 10.1093/Nar/Gkx514 |
0.317 |
|
| 2017 |
Zhou KI, Liu N, Pan T. Identification of N(6)-methyladenosine reader proteins. Methods (San Diego, Calif.). PMID 28454774 DOI: 10.1016/J.Ymeth.2017.04.019 |
0.455 |
|
| 2017 |
Dai Q, Zheng G, Schwartz MH, Clark WC, Pan T. Selective Enzymatic Demethylation of N(2) ,N(2) -Dimethylguanosine in RNA and Its Application in High-Throughput tRNA Sequencing. Angewandte Chemie (International Ed. in English). PMID 28371071 DOI: 10.1002/Anie.201700537 |
0.353 |
|
| 2017 |
Liu N, Zhou KI, Parisien M, Dai Q, Diatchenko L, Pan T. N6-methyladenosine alters RNA structure to regulate binding of a low-complexity protein. Nucleic Acids Research. PMID 28334903 DOI: 10.1093/Nar/Gkx141 |
0.471 |
|
| 2017 |
Lewis CJ, Pan T, Kalsotra A. RNA modifications and structures cooperate to guide RNA-protein interactions. Nature Reviews. Molecular Cell Biology. PMID 28144031 DOI: 10.1038/Nrm.2016.163 |
0.473 |
|
| 2017 |
Schwartz MH, Pan T. Function and origin of mistranslation in distinct cellular contexts. Critical Reviews in Biochemistry and Molecular Biology. 1-15. PMID 28075177 DOI: 10.1080/10409238.2016.1274284 |
0.317 |
|
| 2017 |
Schwartz MH, Pan T. tRNA Misacylation with Methionine in the Mouse Gut Microbiome in Situ. Microbial Ecology. PMID 28070678 DOI: 10.1007/S00248-016-0928-0 |
0.326 |
|
| 2016 |
Liu F, Clark W, Luo G, Wang X, Fu Y, Wei J, Wang X, Hao Z, Dai Q, Zheng G, Ma H, Han D, Evans M, Klungland A, Pan T, et al. ALKBH1-Mediated tRNA Demethylation Regulates Translation. Cell. PMID 27745969 DOI: 10.1016/J.Cell.2016.09.038 |
0.361 |
|
| 2016 |
Schwartz MH, Waldbauer JR, Zhang L, Pan T. Global tRNA misacylation induced by anaerobiosis and antibiotic exposure broadly increases stress resistance in Escherichia coli. Nucleic Acids Research. PMID 27672035 DOI: 10.1093/Nar/Gkw856 |
0.322 |
|
| 2016 |
Schwartz MH, Pan T. Determining the fidelity of tRNA aminoacylation via microarrays. Methods (San Diego, Calif.). PMID 27639882 DOI: 10.1016/J.Ymeth.2016.09.004 |
0.322 |
|
| 2016 |
Sun L, Gomes AC, He W, Zhou H, Wang X, Pan DW, Schimmel P, Pan T, Yang XL. Evolutionary gain of alanine mischarging to non-cognate tRNAs with a G4:U69 base pair. Journal of the American Chemical Society. PMID 27622773 DOI: 10.1021/Jacs.6B07121 |
0.346 |
|
| 2016 |
Clark WC, Evans ME, Dominissini D, Zheng G, Pan T. tRNA base methylation identification and quantification via high-throughput sequencing. Rna (New York, N.Y.). PMID 27613580 DOI: 10.1261/Rna.056531.116 |
0.358 |
|
| 2016 |
Saikia M, Wang X, Mao Y, Wan J, Pan T, Qian SB. Codon optimality controls differential mRNA translation during amino acid starvation. Rna (New York, N.Y.). PMID 27613579 DOI: 10.1261/Rna.058180.116 |
0.313 |
|
| 2016 |
Zhou KI, Pan T. Structures of the m(6)A Methyltransferase Complex: Two Subunits with Distinct but Coordinated Roles. Molecular Cell. 63: 183-5. PMID 27447983 DOI: 10.1016/J.Molcel.2016.07.005 |
0.325 |
|
| 2016 |
Wang X, Pan T. Stress Response and Adaptation Mediated by Amino Acid Misincorporation during Protein Synthesis. Advances in Nutrition (Bethesda, Md.). 7: 773S-9S. PMID 27422514 DOI: 10.3945/An.115.010991 |
0.369 |
|
| 2016 |
Wang X, Chow CR, Ebine K, Lee J, Rosner MR, Pan T, Munshi HG. Interaction of tRNA with MEK2 in pancreatic cancer cells. Scientific Reports. 6: 28260. PMID 27301426 DOI: 10.1038/Srep28260 |
0.32 |
|
| 2016 |
Frye M, Jaffrey SR, Pan T, Rechavi G, Suzuki T. RNA modifications: what have we learned and where are we headed? Nature Reviews. Genetics. PMID 27140282 DOI: 10.1038/Nrg.2016.47 |
0.438 |
|
| 2016 |
Dominissini D, Nachtergaele S, Moshitch-Moshkovitz S, Peer E, Kol N, Ben-Haim MS, Dai Q, Di Segni A, Salmon-Divon M, Clark WC, Zheng G, Pan T, Solomon O, Eyal E, Hershkovitz V, et al. The dynamic N(1)-methyladenosine methylome in eukaryotic messenger RNA. Nature. PMID 26863196 DOI: 10.1038/Nature16998 |
0.417 |
|
| 2016 |
Liu N, Pan T. N(6)-methyladenosine-encoded epitranscriptomics. Nature Structural & Molecular Biology. 23: 98-102. PMID 26840897 DOI: 10.1038/Nsmb.3162 |
0.353 |
|
| 2016 |
Gomes AC, Kordala AJ, Strack R, Wang X, Geslain R, Delaney K, Clark WC, Keenan R, Pan T. A dual fluorescent reporter for the investigation of methionine mistranslation in live cells. Rna (New York, N.Y.). PMID 26729921 DOI: 10.1261/Rna.054163.115 |
0.356 |
|
| 2016 |
Liu N, Pan T. Probing N (6)-methyladenosine (m(6)A) RNA Modification in Total RNA with SCARLET. Methods in Molecular Biology (Clifton, N.J.). 1358: 285-92. PMID 26463390 DOI: 10.1007/978-1-4939-3067-8_17 |
0.334 |
|
| 2015 |
Li Y, Chen H, Pan T, Jiang C, Zhao Z, Wang Z, Zhang J, Xu J, Li X. LncRNA ontology: inferring lncRNA functions based on chromatin states and expression patterns. Oncotarget. PMID 26485761 DOI: 10.18632/Oncotarget.5794 |
0.33 |
|
| 2015 |
Zhou KI, Parisien M, Dai Q, Liu N, Diatchenko L, Sachleben JR, Pan T. N(6)-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding. Journal of Molecular Biology. PMID 26343757 DOI: 10.1016/J.Jmb.2015.08.021 |
0.423 |
|
| 2015 |
Liu N, Pan T. Probing RNA Modification Status at Single-Nucleotide Resolution in Total RNA. Methods in Enzymology. 560: 149-59. PMID 26253970 DOI: 10.1016/Bs.Mie.2015.03.005 |
0.445 |
|
| 2015 |
Macari F, El-Houfi Y, Boldina G, Xu H, Khoury-Hanna S, Ollier J, Yazdani L, Zheng G, Bièche I, Legrand N, Paulet D, Durrieu S, Byström A, Delbecq S, Lapeyre B, ... ... Pan T, et al. TRM6/61 connects PKCα with translational control through tRNAi(Met) stabilization: impact on tumorigenesis. Oncogene. PMID 26234676 DOI: 10.1038/Onc.2015.244 |
0.341 |
|
| 2015 |
Zheng G, Qin Y, Clark WC, Dai Q, Yi C, He C, Lambowitz AM, Pan T. Efficient and quantitative high-throughput tRNA sequencing. Nature Methods. PMID 26214130 DOI: 10.1038/Nmeth.3478 |
0.338 |
|
| 2015 |
Pan T. My adventure in tRNA biology, so far. Rna (New York, N.Y.). 21: 707-8. PMID 25780201 DOI: 10.1261/Rna.049833.115 |
0.425 |
|
| 2015 |
Liu N, Dai Q, Zheng G, He C, Parisien M, Pan T. N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions. Nature. 518: 560-4. PMID 25719671 DOI: 10.1038/Nature14234 |
0.457 |
|
| 2015 |
Liu N, Pan T. RNA epigenetics. Translational Research : the Journal of Laboratory and Clinical Medicine. 165: 28-35. PMID 24768686 DOI: 10.1016/j.trsl.2014.04.003 |
0.317 |
|
| 2014 |
Zaborske JM, DuMont VL, Wallace EW, Pan T, Aquadro CF, Drummond DA. A nutrient-driven tRNA modification alters translational fidelity and genome-wide protein coding across an animal genus. Plos Biology. 12: e1002015. PMID 25489848 DOI: 10.1371/Journal.Pbio.1002015 |
0.328 |
|
| 2014 |
Saikia M, Jobava R, Parisien M, Putnam A, Krokowski D, Gao XH, Guan BJ, Yuan Y, Jankowsky E, Feng Z, Hu GF, Pusztai-Carey M, Gorla M, Sepuri NB, Pan T, et al. Angiogenin-cleaved tRNA halves interact with cytochrome c, protecting cells from apoptosis during osmotic stress. Molecular and Cellular Biology. 34: 2450-63. PMID 24752898 DOI: 10.1128/Mcb.00136-14 |
0.331 |
|
| 2014 |
Wang X, Lu Z, Gomez A, Hon GC, Yue Y, Han D, Fu Y, Parisien M, Dai Q, Jia G, Ren B, Pan T, He C. N6-methyladenosine-dependent regulation of messenger RNA stability. Nature. 505: 117-20. PMID 24284625 DOI: 10.1038/Nature12730 |
0.43 |
|
| 2013 |
Parisien M, Wang X, Pan T. Diversity of human tRNA genes from the 1000-genomes project. Rna Biology. 10: 1853-67. PMID 24448271 DOI: 10.4161/Rna.27361 |
0.321 |
|
| 2013 |
Liu N, Parisien M, Dai Q, Zheng G, He C, Pan T. Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA. Rna (New York, N.Y.). 19: 1848-56. PMID 24141618 DOI: 10.1261/Rna.041178.113 |
0.39 |
|
| 2013 |
Czech A, Wende S, Mörl M, Pan T, Ignatova Z. Reversible and rapid transfer-RNA deactivation as a mechanism of translational repression in stress. Plos Genetics. 9: e1003767. PMID 24009533 DOI: 10.1371/Journal.Pgen.1003767 |
0.388 |
|
| 2013 |
Parisien M, Wang X, Perdrizet G, Lamphear C, Fierke CA, Maheshwari KC, Wilde MJ, Sosnick TR, Pan T. Discovering RNA-protein interactome by using chemical context profiling of the RNA-protein interface. Cell Reports. 3: 1703-13. PMID 23665222 DOI: 10.1016/J.Celrep.2013.04.010 |
0.468 |
|
| 2013 |
Vilfan ID, Tsai YC, Clark TA, Wegener J, Dai Q, Yi C, Pan T, Turner SW, Korlach J. Analysis of RNA base modification and structural rearrangement by single-molecule real-time detection of reverse transcription. Journal of Nanobiotechnology. 11: 8. PMID 23552456 DOI: 10.1186/1477-3155-11-8 |
0.455 |
|
| 2013 |
Pavon-Eternod M, Gomes S, Rosner MR, Pan T. Overexpression of initiator methionine tRNA leads to global reprogramming of tRNA expression and increased proliferation in human epithelial cells. Rna (New York, N.Y.). 19: 461-6. PMID 23431330 DOI: 10.1261/Rna.037507.112 |
0.348 |
|
| 2013 |
Pan T. N6-methyl-adenosine modification in messenger and long non-coding RNA Trends in Biochemical Sciences. 38: 204-209. PMID 23337769 DOI: 10.1016/J.Tibs.2012.12.006 |
0.409 |
|
| 2013 |
Subramaniam AR, Pan T, Cluzel P. Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 110: 2419-24. PMID 23277573 DOI: 10.1073/Pnas.1211077110 |
0.312 |
|
| 2013 |
Pavon-Eternod M, David A, Dittmar K, Berglund P, Pan T, Bennink JR, Yewdell JW. Vaccinia and influenza A viruses select rather than adjust tRNAs to optimize translation. Nucleic Acids Research. 41: 1914-21. PMID 23254333 DOI: 10.1093/Nar/Gks986 |
0.318 |
|
| 2012 |
Saikia M, Krokowski D, Guan BJ, Ivanov P, Parisien M, Hu GF, Anderson P, Pan T, Hatzoglou M. Genome-wide identification and quantitative analysis of cleaved tRNA fragments induced by cellular stress. The Journal of Biological Chemistry. 287: 42708-25. PMID 23086926 DOI: 10.1074/Jbc.M112.371799 |
0.306 |
|
| 2012 |
Li M, Kao E, Gao X, Sandig H, Limmer K, Pavon-Eternod M, Jones TE, Landry S, Pan T, Weitzman MD, David M. Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11. Nature. 491: 125-8. PMID 23000900 DOI: 10.1038/Nature11433 |
0.303 |
|
| 2012 |
Zhou DH, Lee J, Frankenberger C, Geslain R, Rosner M, Pan T. Anti-tumor effects of an engineered "killer" transfer RNA. Biochemical and Biophysical Research Communications. 427: 148-53. PMID 22989754 DOI: 10.1016/J.Bbrc.2012.09.028 |
0.324 |
|
| 2012 |
Wiltrout E, Goodenbour JM, Fréchin M, Pan T. Misacylation of tRNA with methionine in Saccharomyces cerevisiae. Nucleic Acids Research. 40: 10494-506. PMID 22941646 DOI: 10.1093/Nar/Gks805 |
0.405 |
|
| 2012 |
Starck SR, Jiang V, Pavon-Eternod M, Prasad S, McCarthy B, Pan T, Shastri N. Leucine-tRNA initiates at CUG start codons for protein synthesis and presentation by MHC class I. Science (New York, N.Y.). 336: 1719-23. PMID 22745432 DOI: 10.1126/Science.1220270 |
0.381 |
|
| 2012 |
Novoa EM, Pavon-Eternod M, Pan T, Ribas de Pouplana L. A role for tRNA modifications in genome structure and codon usage. Cell. 149: 202-13. PMID 22464330 DOI: 10.1016/J.Cell.2012.01.050 |
0.308 |
|
| 2012 |
Perdrizet GA, Artsimovitch I, Furman R, Sosnick TR, Pan T. Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch. Proceedings of the National Academy of Sciences of the United States of America. 109: 3323-8. PMID 22331895 DOI: 10.1073/Pnas.1113086109 |
0.422 |
|
| 2012 |
Parisien M, Yi C, Pan T. Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons. Rna (New York, N.Y.). 18: 355-67. PMID 22282339 DOI: 10.1261/Rna.031351.111 |
0.377 |
|
| 2012 |
Jia G, Fu Y, Zhao X, Dai Q, Zheng G, Yang Y, Yi C, Lindahl T, Pan T, Yang Y, He C. Erratum: Corrigendum: N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO Nature Chemical Biology. 8: 1008-1008. DOI: 10.1038/Nchembio1212-1008A |
0.346 |
|
| 2012 |
Shastri N, Starck S, Jiang V, Pavon-Eternod M, Prasad S, McCarthy B, Pan T. A novel transfer RNA shapes the cryptic peptide repertoire presented by MHC class I molecules Molecular Immunology. 51: 30. DOI: 10.1016/J.Molimm.2012.02.082 |
0.335 |
|
| 2011 |
Jia G, Fu Y, Zhao X, Dai Q, Zheng G, Yang Y, Yi C, Lindahl T, Pan T, Yang YG, He C. N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO. Nature Chemical Biology. 7: 885-7. PMID 22002720 DOI: 10.1038/Nchembio.687 |
0.385 |
|
| 2011 |
Geslain R, Pan T. tRNA: Vast reservoir of RNA molecules with unexpected regulatory function Proceedings of the National Academy of Sciences of the United States of America. 108: 16489-16490. PMID 21933958 DOI: 10.1073/Pnas.1113715108 |
0.446 |
|
| 2011 |
Yi C, Pan T. Cellular dynamics of RNA modification. Accounts of Chemical Research. 44: 1380-8. PMID 21615108 DOI: 10.1021/Ar200057M |
0.457 |
|
| 2011 |
Jones TE, Alexander RW, Pan T. Misacylation of specific nonmethionyl tRNAs by a bacterial methionyl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 108: 6933-8. PMID 21482813 DOI: 10.1073/Pnas.1019033108 |
0.365 |
|
| 2010 |
Reiter NJ, Osterman A, Torres-Larios A, Swinger KK, Pan T, Mondragón A. Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA. Nature. 468: 784-9. PMID 21076397 DOI: 10.1038/Nature09516 |
0.448 |
|
| 2010 |
Baird NJ, Ludtke SJ, Khant H, Chiu W, Pan T, Sosnick TR. Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy. Journal of the American Chemical Society. 132: 16352-3. PMID 21038867 DOI: 10.1021/Ja107492B |
0.38 |
|
| 2010 |
Fu Y, Dai Q, Zhang W, Ren J, Pan T, He C. The AlkB domain of mammalian ABH8 catalyzes hydroxylation of 5-methoxycarbonylmethyluridine at the wobble position of tRNA. Angewandte Chemie (International Ed. in English). 49: 8885-8. PMID 20583019 DOI: 10.1002/Anie.201001242 |
0.369 |
|
| 2010 |
Tuller T, Carmi A, Vestsigian K, Navon S, Dorfan Y, Zaborske J, Pan T, Dahan O, Furman I, Pilpel Y. An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell. 141: 344-54. PMID 20403328 DOI: 10.1016/J.Cell.2010.03.031 |
0.32 |
|
| 2010 |
Baird NJ, Gong H, Zaheer SS, Freed KF, Pan T, Sosnick TR. Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion. Journal of Molecular Biology. 397: 1298-306. PMID 20188108 DOI: 10.1016/J.Jmb.2010.02.025 |
0.437 |
|
| 2010 |
Geslain R, Pan T. Functional Analysis of Human tRNA Isodecoders Journal of Molecular Biology. 396: 821-831. PMID 20026070 DOI: 10.1016/J.Jmb.2009.12.018 |
0.313 |
|
| 2010 |
Pavon-Eternod M, Wei M, Pan T, Kleiman L. Profiling non-lysyl tRNAs in HIV-1. Rna (New York, N.Y.). 16: 267-73. PMID 20007329 DOI: 10.1261/Rna.1928110 |
0.329 |
|
| 2010 |
Pan T. Folding of bacterial RNase P RNA Protein Reviews. 10: 79-91. DOI: 10.1007/978-1-4419-1142-1-5 |
0.328 |
|
| 2009 |
Wong TN, Pan T. RNA folding during transcription: protocols and studies Methods in Enzymology. 468: 167-193. PMID 20946770 DOI: 10.1016/S0076-6879(09)68009-5 |
0.731 |
|
| 2009 |
Netzer N, Goodenbour JM, David A, Dittmar KA, Jones RB, Schneider JR, Boone D, Eves EM, Rosner MR, Gibbs JS, Embry A, Dolan B, Das S, Hickman HD, Berglund P, ... ... Pan T, et al. Innate immune and chemically triggered oxidative stress modifies translational fidelity. Nature. 462: 522-6. PMID 19940929 DOI: 10.1038/Nature08576 |
0.375 |
|
| 2009 |
Zhou Y, Goodenbour JM, Godley LA, Wickrema A, Pan T. High levels of tRNA abundance and alteration of tRNA charging by bortezomib in multiple myeloma. Biochemical and Biophysical Research Communications. 385: 160-4. PMID 19450555 DOI: 10.1016/J.Bbrc.2009.05.031 |
0.36 |
|
| 2008 |
Qu X, Smith GJ, Lee KT, Sosnick TR, Pan T, Scherer NF. Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA. Proceedings of the National Academy of Sciences of the United States of America. 105: 6602-7. PMID 18448679 DOI: 10.1073/Pnas.0801436105 |
0.399 |
|
| 2008 |
Smith GJ, Lee KT, Qu X, Xie Z, Pesic J, Sosnick TR, Pan T, Scherer NF. A large collapsed-state RNA can exhibit simple exponential single-molecule dynamics. Journal of Molecular Biology. 378: 943-53. PMID 18402978 DOI: 10.1016/J.Jmb.2008.01.078 |
0.431 |
|
| 2007 |
Wong TN, Sosnick TR, Pan T. Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures. Proceedings of the National Academy of Sciences of the United States of America. 104: 17995-8000. PMID 17986617 DOI: 10.1073/Pnas.0705038104 |
0.732 |
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| 2007 |
Baird NJ, Fang XW, Srividya N, Pan T, Sosnick TR. Folding of a universal ribozyme: the ribonuclease P RNA. Quarterly Reviews of Biophysics. 40: 113-61. PMID 17931443 DOI: 10.1017/S0033583507004623 |
0.455 |
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| 2007 |
Dai Q, Fong R, Saikia M, Stephenson D, Yu YT, Pan T, Piccirilli JA. Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine. Nucleic Acids Research. 35: 6322-9. PMID 17881375 DOI: 10.1093/Nar/Gkm657 |
0.442 |
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| 2006 |
Dittmar KA, Goodenbour JM, Pan T. Tissue-specific differences in human transfer RNA expression. Plos Genetics. 2: e221. PMID 17194224 DOI: 10.1371/Journal.Pgen.0020221 |
0.365 |
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| 2006 |
Goodenbour JM, Pan T. Diversity of tRNA genes in eukaryotes. Nucleic Acids Research. 34: 6137-46. PMID 17088292 DOI: 10.1093/Nar/Gkl725 |
0.334 |
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| 2006 |
Saikia M, Dai Q, Decatur WA, Fournier MJ, Piccirilli JA, Pan T. A systematic, ligation-based approach to study RNA modifications. Rna (New York, N.Y.). 12: 2025-33. PMID 16963711 DOI: 10.1261/Rna.208906 |
0.464 |
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| 2006 |
Pan T, Sosnick T. RNA folding during transcription Annual Review of Biophysics and Biomolecular Structure. 35: 161-175. PMID 16689632 DOI: 10.1146/Annurev.Biophys.35.040405.102053 |
0.469 |
|
| 2006 |
Torres-Larios A, Swinger KK, Pan T, Mondragón A. Structure of ribonuclease P--a universal ribozyme. Current Opinion in Structural Biology. 16: 327-35. PMID 16650980 DOI: 10.1016/J.Sbi.2006.04.002 |
0.44 |
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| 2006 |
Baird NJ, Srividya N, Krasilnikov AS, Mondragón A, Sosnick TR, Pan T. Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium. Rna (New York, N.Y.). 12: 598-606. PMID 16581805 DOI: 10.1261/Rna.2186506 |
0.35 |
|
| 2005 |
Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR. Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. Journal of Molecular Biology. 352: 712-22. PMID 16115647 DOI: 10.1016/J.Jmb.2005.07.010 |
0.374 |
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| 2005 |
Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T, Mondragón A. Crystal structure of the RNA component of bacterial ribonuclease P. Nature. 437: 584-7. PMID 16113684 DOI: 10.1038/Nature04074 |
0.47 |
|
| 2005 |
Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. Real-time RNA profiling within a single bacterium. Proceedings of the National Academy of Sciences of the United States of America. 102: 9160-4. PMID 15967986 DOI: 10.1073/Pnas.0503311102 |
0.426 |
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| 2005 |
Wong T, Sosnick TR, Pan T. Mechanistic insights on the folding of a large ribozyme during transcription. Biochemistry. 44: 7535-42. PMID 15895996 DOI: 10.1021/Bi047560L |
0.733 |
|
| 2005 |
Smith GJ, Sosnick TR, Scherer NF, Pan T. Efficient fluorescence labeling of a large RNA through oligonucleotide hybridization. Rna (New York, N.Y.). 11: 234-9. PMID 15613536 DOI: 10.1261/Rna.7180305 |
0.444 |
|
| 2004 |
Krasilnikov AS, Xiao Y, Pan T, Mondragón A. Basis for structural diversity in homologous RNAs. Science (New York, N.Y.). 306: 104-7. PMID 15459389 DOI: 10.1126/Science.1101489 |
0.384 |
|
| 2004 |
Sosnick TR, Pan T. Reduced contact order and RNA folding rates. Journal of Molecular Biology. 342: 1359-65. PMID 15364565 DOI: 10.1016/J.Jmb.2004.08.002 |
0.424 |
|
| 2004 |
Dittmar KA, Mobley EM, Radek AJ, Pan T. Exploring the regulation of tRNA distribution on the genomic scale. Journal of Molecular Biology. 337: 31-47. PMID 15001350 DOI: 10.1016/J.Jmb.2004.01.024 |
0.381 |
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| 2004 |
Barrera A, Pan T. Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit. Rna (New York, N.Y.). 10: 482-92. PMID 14970393 DOI: 10.1261/Rna.5163104 |
0.392 |
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| 2004 |
Xie Z, Srividya N, Sosnick TR, Pan T, Scherer NF. Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme. Proceedings of the National Academy of Sciences of the United States of America. 101: 534-9. PMID 14704266 DOI: 10.1073/Pnas.2636333100 |
0.343 |
|
| 2003 |
Sosnick TR, Pan T. RNA folding: models and perspectives. Current Opinion in Structural Biology. 13: 309-16. PMID 12831881 DOI: 10.1016/S0959-440X(03)00066-6 |
0.391 |
|
| 2003 |
Fang XW, Srividya N, Golden BL, Sosnick TR, Pan T. Stepwise conversion of a mesophilic to a thermophilic ribozyme. Journal of Molecular Biology. 330: 177-83. PMID 12823959 DOI: 10.1016/S0022-2836(03)00582-5 |
0.425 |
|
| 2003 |
Krasilnikov AS, Yang X, Pan T, Mondragón A. Crystal structure of the specificity domain of ribonuclease P. Nature. 421: 760-4. PMID 12610630 DOI: 10.1038/Nature01386 |
0.432 |
|
| 2002 |
Sosnick TR, Pan T. Getting hotter with RNA. Nature Structural Biology. 9: 795-6. PMID 12402034 DOI: 10.1038/Nsb1102-795 |
0.407 |
|
| 2002 |
Barrera A, Fang X, Jacob J, Casey E, Thiyagarajan P, Pan T. Dimeric and monomeric Bacillus subtilis RNase P holoenzyme in the absence and presence of pre-tRNA substrates. Biochemistry. 41: 12986-94. PMID 12390025 DOI: 10.1021/Bi020416K |
0.405 |
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| 2002 |
Fang XW, Thiyagarajan P, Sosnick TR, Pan T. The rate-limiting step in the folding of a large ribozyme without kinetic traps. Proceedings of the National Academy of Sciences of the United States of America. 99: 8518-23. PMID 12084911 DOI: 10.1073/Pnas.142288399 |
0.397 |
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| 2001 |
Pan T. Probing RNA structure by lead cleavage Current Protocols in Nucleic Acid Chemistry / Edited by Serge L. Beaucage ... [Et Al.]. PMID 18428864 DOI: 10.1002/0471142700.Nc0603S00 |
0.448 |
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| 2001 |
Qin H, Sosnick TR, Pan T. Modular construction of a tertiary RNA structure: the specificity domain of the Bacillus subtilis RNase P RNA. Biochemistry. 40: 11202-10. PMID 11551219 DOI: 10.1021/Bi010076N |
0.407 |
|
| 2001 |
Loria A, Pan T. Modular construction for function of a ribonucleoprotein enzyme: The catalytic domain of Bacillus subtilis RNase P complexed with B. subtilis RNase P protein Nucleic Acids Research. 29: 1892-1897. PMID 11328872 DOI: 10.1093/Nar/29.9.1892 |
0.408 |
|
| 2001 |
Shelton VM, Sosnick TR, Pan T. Altering the intermediate in the equilibrium folding of unmodified yeast tRNAPhe with monovalent and divalent cations. Biochemistry. 40: 3629-38. PMID 11297430 DOI: 10.1021/Bi002646+ |
0.313 |
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| 2001 |
Fang XW, Golden BL, Littrell K, Shelton V, Thiyagarajan P, Pan T, Sosnick TR. The thermodynamic origin of the stability of a thermophilic ribozyme. Proceedings of the National Academy of Sciences of the United States of America. 98: 4355-60. PMID 11296284 DOI: 10.1073/Pnas.071050698 |
0.4 |
|
| 2001 |
Fang XW, Yang XJ, Littrell K, Niranjanakumari S, Thiyagarajan P, Fierke CA, Sosnick TR, Pan T. The Bacillus subtilis RNase P holoenzyme contains two RNase P RNA and two RNase P protein subunits. Rna (New York, N.Y.). 7: 233-41. PMID 11233980 DOI: 10.1017/S1355838201001352 |
0.408 |
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| 2000 |
Loria A, Pan T. The 3' substrate determinants for the catalytic efficiency of the Bacillus subtilis RNase P holoenzymes suggest autolytic processing of the RNase P RNA in vivo Rna. 6: 1413-1422. PMID 11073217 DOI: 10.1017/S1355838200000959 |
0.459 |
|
| 2000 |
Fang X, Littrell K, Yang XJ, Henderson SJ, Siefert S, Thiyagarajan P, Pan T, Sosnick TR. Mg2+-dependent compaction and folding of yeast tRNAPhe and the catalytic domain of the B. subtilis RNase P RNA determined by small-angle X-ray scattering. Biochemistry. 39: 11107-13. PMID 10998249 DOI: 10.1021/Bi000724N |
0.422 |
|
| 2000 |
Pan T. Probing RNA structure and function by circular permutation Methods in Enzymology. 317: 313-330. PMID 10829288 DOI: 10.1016/S0076-6879(00)17022-3 |
0.454 |
|
| 1999 |
Fang X, Pan T, Sosnick TR. A thermodynamic framework and cooperativity in the tertiary folding of a Mg2+-dependent ribozyme. Biochemistry. 38: 16840-6. PMID 10606517 DOI: 10.1021/Bi991700N |
0.363 |
|
| 1999 |
Shelton VM, Sosnick TR, Pan T. Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding. Biochemistry. 38: 16831-9. PMID 10606516 DOI: 10.1021/Bi991699S |
0.405 |
|
| 1999 |
Fang XW, Pan T, Sosnick TR. Mg2+-dependent folding of a large ribozyme without kinetic traps. Nature Structural Biology. 6: 1091-5. PMID 10581546 DOI: 10.1038/70016 |
0.334 |
|
| 1999 |
Mobley EM, Pan T. Design and isolation of ribozyme-substrate pairs using RNase P-based ribozymes containing altered substrate binding sites Nucleic Acids Research. 27: 4298-4304. PMID 10518624 DOI: 10.1093/Nar/27.21.4298 |
0.396 |
|
| 1999 |
Pan T, Artsimovitch I, Fang XW, Landick R, Sosnick TR. Folding of a large ribozyme during transcription and the effect of the elongation factor NusA. Proceedings of the National Academy of Sciences of the United States of America. 96: 9545-50. PMID 10449729 DOI: 10.1073/Pnas.96.17.9545 |
0.462 |
|
| 1999 |
Loria A, Pan T. The cleavage step of ribonuclease P catalysis is determined by ribozyme-substrate interactions both distal and proximal to the cleavage site. Biochemistry. 38: 8612-8620. PMID 10393536 DOI: 10.1021/Bi990691F |
0.342 |
|
| 1999 |
Pan T, Fang X, Sosnick T. Pathway modulation, circular permutation and rapid RNA folding under kinetic control. Journal of Molecular Biology. 286: 721-31. PMID 10024446 DOI: 10.1006/Jmbi.1998.2516 |
0.425 |
|
| 1998 |
Loria A, Niranjanakumari S, Fierke CA, Pan T. Recognition of a pre-tRNA substrate by the Bacillus subtilis RNase P holoenzyme. Biochemistry. 37: 15466-73. PMID 9799509 DOI: 10.1021/Bi9816507 |
0.46 |
|
| 1998 |
Odell L, Huang V, Jakacka M, Pan T. Interaction of structural modules in substrate binding by the ribozyme from Bacillus subtilis RNase P Nucleic Acids Research. 26: 3717-3723. PMID 9685487 DOI: 10.1093/Nar/26.16.3717 |
0.402 |
|
| 1998 |
Loria A, Pan T. Recognition of the 5' leader and the acceptor stem of a pre-tRNA substrate by the ribozyme from Bacillus subtilis RNase P. Biochemistry. 37: 10126-10133. PMID 9665718 DOI: 10.1021/Bi980220D |
0.319 |
|
| 1998 |
Pan T. How RNA function requires structure Nature Structural Biology. 5: 540-541. DOI: 10.1038/793 |
0.421 |
|
| 1997 |
Pan T. Novel and variant ribozymes obtained through in vitro selection Current Opinion in Chemical Biology. 1: 17-25. PMID 9667827 DOI: 10.1016/S1367-5931(97)80104-4 |
0.384 |
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| 1997 |
Pan T, Sosnick TR. Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity. Nature Structural Biology. 4: 931-8. PMID 9360610 DOI: 10.1038/Nsb1197-931 |
0.394 |
|
| 1997 |
Loria A, Pan T. Recognition of the T stem-loop of a pre-tRNA substrate by the ribozyme from Bacillus subtilis ribonuclease P. Biochemistry. 36: 6317-6325. PMID 9174346 DOI: 10.1021/Bi970115O |
0.391 |
|
| 1996 |
Pan T, Jakacka M. Multiple substrate binding sites in the ribozyme from Bacillus subtilis RNase P Embo Journal. 15: 2249-2255. PMID 8641290 DOI: 10.1002/J.1460-2075.1996.Tb00578.X |
0.463 |
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| 1995 |
Pan T, Loria A, Zhong K. Probing of tertiary interactions in RNA: 2′-hydroxyl-base contacts between the RNase P RNA and pre-tRNA Proceedings of the National Academy of Sciences of the United States of America. 92: 12510-12514. PMID 8618931 DOI: 10.1073/Pnas.92.26.12510 |
0.451 |
|
| 1995 |
Pan T. Higher order folding and domain analysis of the ribozyme from bacillus subtilis ribonuclease P Biochemistry®. 34: 902-909. PMID 7827048 DOI: 10.1021/Bi00003A024 |
0.424 |
|
| 1995 |
Pan T. Novel RNA Substrates for the Ribozyme from Bacillus subtilis Ribonuclease P Identified by in Vitro Selection Biochemistry®. 34: 8458-8464. PMID 7541243 DOI: 10.1021/Bi00026A029 |
0.467 |
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| 1994 |
Peterson ET, Pan T, Coleman J, Uhlenbeck OC. In vitro selection of small RNAs that bind to Escherichia coli phenylalanyl-tRNA synthetase. Journal of Molecular Biology. 242: 186-92. PMID 8089840 DOI: 10.1006/Jmbi.1994.1571 |
0.613 |
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| 1994 |
Pan T, Dichtl B, Uhlenbeck OC. Properties of an in vitro selected Pb2+ cleavage motif. Biochemistry. 33: 9561-5. PMID 8068631 DOI: 10.1021/Bi00198A023 |
0.61 |
|
| 1994 |
Pan T, Zhong K. Selection of circularly permuted ribozymes from Bacillus subtilis RNAse P by substrate binding Biochemistry. 33: 14207-14212. PMID 7524672 DOI: 10.1021/Bi00251A032 |
0.446 |
|
| 1993 |
Pan T, Uhlenbeck OC. Circularly permuted DNA, RNA and proteins - a review Gene. 125: 111-114. PMID 7681803 DOI: 10.1016/0378-1119(93)90317-V |
0.624 |
|
| 1993 |
Dichtl B, Pan T, Direnzo AB, Uhlenbeck OC. Replacement of RNA hairpins by in vitro selected tetranucleotides Nucleic Acids Research. 21: 531-535. PMID 7680121 DOI: 10.1093/Nar/21.3.531 |
0.638 |
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| 1993 |
Pan T, Long DM, Uhlenbeck OC. 12 Divalent Metal Ions in RNA Folding and Catalysis Cold Spring Harbor Monograph Archive. 24: 271-302. DOI: 10.1101/087969380.24.271 |
0.554 |
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| 1992 |
Pan T, Uhlenbeck OC. A small metalloribozyme with a two-step mechanism Nature. 358: 560-563. PMID 1501711 DOI: 10.1038/358560A0 |
0.606 |
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| 1992 |
Pan T, Uhlenbeck OC. In vitro selection of RNAs that undergo autolytic cleavage with Pb2+ Biochemistry. 31: 3887-3895. PMID 1373649 DOI: 10.1021/Bi00131A001 |
0.636 |
|
| 1991 |
Pan T, Gutell RR, Uhlenbeck OC. Folding of circularly permuted transfer RNAs Science. 254: 1361-1364. PMID 1720569 DOI: 10.1126/Science.1720569 |
0.623 |
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