| Year |
Citation |
Score |
| 2024 |
Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, Bae JA, Mitchell E, Mu S, Trautman ET, Saalfeld S, Li K, Seung HS. Petascale pipeline for precise alignment of images from serial section electron microscopy. Nature Communications. 15: 289. PMID 38177169 DOI: 10.1038/s41467-023-44354-0 |
0.314 |
|
| 2023 |
Heinrich L, Patton W, Bennett D, Ackerman D, Park G, Bogovic JA, Eckstein N, Petruncio A, Clements J, Pang S, Shan Xu C, Funke J, Korff W, Hess H, Lippincott-Schwartz J, ... Saalfeld S, et al. Towards Generalizable Organelle Segmentation in Volume Electron Microscopy. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 29: 975. PMID 37613645 DOI: 10.1093/micmic/ozad067.487 |
0.692 |
|
| 2022 |
Sheridan A, Nguyen TM, Deb D, Lee WA, Saalfeld S, Turaga SC, Manor U, Funke J. Local shape descriptors for neuron segmentation. Nature Methods. PMID 36585455 DOI: 10.1038/s41592-022-01711-z |
0.717 |
|
| 2022 |
Lillvis JL, Otsuna H, Ding X, Pisarev I, Kawase T, Colonell J, Rokicki K, Goina C, Gao R, Hu A, Wang K, Bogovic J, Milkie DE, Meienberg L, Mensh BD, ... ... Saalfeld S, et al. Rapid reconstruction of neural circuits using tissue expansion and light sheet microscopy. Elife. 11. PMID 36286237 DOI: 10.7554/eLife.81248 |
0.311 |
|
| 2022 |
Zhu PP, Hung HF, Batchenkova N, Nixon-Abell J, Henderson J, Zheng P, Renvoisé B, Pang S, Xu CS, Saalfeld S, Funke J, Xie Y, Svara F, Hess HF, Blackstone C. Transverse endoplasmic reticulum expansion in hereditary spastic paraplegia corticospinal axons. Human Molecular Genetics. PMID 35348668 DOI: 10.1093/hmg/ddac072 |
0.67 |
|
| 2021 |
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, Xu CS, Funke J, Korff W, Hess HF, Lippincott-Schwartz J, Saalfeld S, et al. Whole-cell organelle segmentation in volume electron microscopy. Nature. PMID 34616042 DOI: 10.1038/s41586-021-03977-3 |
0.735 |
|
| 2021 |
Buhmann J, Sheridan A, Malin-Mayor C, Schlegel P, Gerhard S, Kazimiers T, Krause R, Nguyen TM, Heinrich L, Lee WA, Wilson R, Saalfeld S, Jefferis GSXE, Bock DD, Turaga SC, et al. Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set. Nature Methods. PMID 34168373 DOI: 10.1038/s41592-021-01183-7 |
0.752 |
|
| 2020 |
Scheffer LK, Xu CS, Januszewski M, Lu Z, Takemura SY, Hayworth KJ, Huang GB, Shinomiya K, Maitlin-Shepard J, Berg S, Clements J, Hubbard PM, Katz WT, Umayam L, Zhao T, ... ... Saalfeld S, et al. A connectome and analysis of the adult central brain. Elife. 9. PMID 32880371 DOI: 10.7554/Elife.57443 |
0.74 |
|
| 2019 |
Saalfeld S. Computational methods for stitching, alignment, and artifact correction of serial section data. Methods in Cell Biology. 152: 261-276. PMID 31326024 DOI: 10.1016/Bs.Mcb.2019.04.007 |
0.411 |
|
| 2019 |
Gao R, Asano SM, Upadhyayula S, Pisarev I, Milkie DE, Liu TL, Singh V, Graves A, Huynh GH, Zhao Y, Bogovic J, Colonell J, Ott CM, Zugates C, Tappan S, ... ... Saalfeld S, et al. Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution. Science (New York, N.Y.). 363. PMID 30655415 DOI: 10.1126/Science.Aau8302 |
0.413 |
|
| 2018 |
Zheng Z, Lauritzen JS, Perlman E, Robinson CG, Nichols M, Milkie D, Torrens O, Price J, Fisher CB, Sharifi N, Calle-Schuler SA, Kmecova L, Ali IJ, Karsh B, Trautman ET, ... ... Saalfeld S, et al. A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster. Cell. PMID 30033368 DOI: 10.1016/J.Cell.2018.06.019 |
0.454 |
|
| 2018 |
Funke J, Tschopp FD, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC. Large Scale Image Segmentation with Structured Loss based Deep Learning for Connectome Reconstruction. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 29993708 DOI: 10.1109/Tpami.2018.2835450 |
0.727 |
|
| 2017 |
Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Scott Champion A, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, et al. Whole-brain serial-section electron microscopy in larval zebrafish. Nature. PMID 28489821 DOI: 10.1038/Nature22356 |
0.482 |
|
| 2017 |
Hanslovsky P, Bogovic JA, Saalfeld S. Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy. Bioinformatics (Oxford, England). 33: 1379-1386. PMID 28453669 DOI: 10.1093/Bioinformatics/Btw794 |
0.39 |
|
| 2016 |
Schneider-Mizell CM, Gerhard S, Longair M, Kazimiers T, Li F, Zwart MF, Champion A, Midgley FM, Fetter RD, Saalfeld S, Cardona A. Quantitative neuroanatomy for connectomics in Drosophila. Elife. 5. PMID 26990779 DOI: 10.7554/Elife.12059 |
0.672 |
|
| 2016 |
Schneider-Mizell CM, Gerhard S, Longair M, Kazimiers T, Li F, Zwart MF, Champion A, Midgley FM, Fetter RD, Saalfeld S, Cardona A. Author response: Quantitative neuroanatomy for connectomics in Drosophila Elife. DOI: 10.7554/Elife.12059.032 |
0.628 |
|
| 2015 |
Pietzsch T, Saalfeld S, Preibisch S, Tomancak P. BigDataViewer: visualization and processing for large image data sets. Nature Methods. 12: 481-3. PMID 26020499 DOI: 10.1038/Nmeth.3392 |
0.3 |
|
| 2015 |
Hanslovsky P, Bogovic JA, Saalfeld S. Post-acquisition image based compensation for thickness variation in microscopy section series Proceedings - International Symposium On Biomedical Imaging. 2015: 507-511. DOI: 10.1109/ISBI.2015.7163922 |
0.303 |
|
| 2014 |
Jambor H, Surendranath V, Kalinka AT, Mejstrik P, Saalfeld S, Tomancak P. Author response: Systematic imaging reveals features and changing localization of mRNAs in Drosophila development Elife. DOI: 10.7554/Elife.05003.028 |
0.332 |
|
| 2012 |
Pietzsch T, Preibisch S, Tomancák P, Saalfeld S. ImgLib2--generic image processing in Java. Bioinformatics (Oxford, England). 28: 3009-11. PMID 22962343 DOI: 10.1093/bioinformatics/bts543 |
0.314 |
|
| 2012 |
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, et al. Fiji: an open-source platform for biological-image analysis. Nature Methods. 9: 676-82. PMID 22743772 DOI: 10.1038/Nmeth.2019 |
0.724 |
|
| 2012 |
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ. TrakEM2 software for neural circuit reconstruction. Plos One. 7: e38011. PMID 22723842 DOI: 10.1371/Journal.Pone.0038011 |
0.774 |
|
| 2012 |
Saalfeld S, Fetter R, Cardona A, Tomancak P. Elastic volume reconstruction from series of ultra-thin microscopy sections. Nature Methods. 9: 717-20. PMID 22688414 DOI: 10.1038/Nmeth.2072 |
0.581 |
|
| 2010 |
Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V. An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy. Plos Biology. 8. PMID 20957184 DOI: 10.1371/Journal.Pbio.1000502 |
0.731 |
|
| 2010 |
Saalfeld S, Cardona A, Hartenstein V, Toman?ák P. As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. Bioinformatics (Oxford, England). 26: i57-63. PMID 20529937 DOI: 10.1093/Bioinformatics/Btq219 |
0.691 |
|
| 2010 |
Cardona A, Saalfeld S, Arganda I, Pereanu W, Schindelin J, Hartenstein V. Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 7538-53. PMID 20519528 DOI: 10.1523/Jneurosci.0186-10.2010 |
0.684 |
|
| 2009 |
Cardona A, Saalfeld S, Tomancak P, Hartenstein V. Drosophila brain development: closing the gap between a macroarchitectural and microarchitectural approach. Cold Spring Harbor Symposia On Quantitative Biology. 74: 235-48. PMID 20028843 DOI: 10.1101/Sqb.2009.74.037 |
0.721 |
|
| 2009 |
Saalfeld S, Cardona A, Hartenstein V, Tomancak P. CATMAID: collaborative annotation toolkit for massive amounts of image data. Bioinformatics (Oxford, England). 25: 1984-6. PMID 19376822 DOI: 10.1093/Bioinformatics/Btp266 |
0.679 |
|
| 2009 |
Preibisch S, Saalfeld S, Tomancak P. Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinformatics (Oxford, England). 25: 1463-5. PMID 19346324 DOI: 10.1093/Bioinformatics/Btp184 |
0.379 |
|
| 2009 |
Preibisch S, Saalfeld S, Rohlfing T, Tomancak P. Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7259. DOI: 10.1117/12.812612 |
0.378 |
|
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