Ken Kurokawa, Ph.D - Publications

Affiliations: 
2008-2016 School of Life Science and Technology Tokyo Institute of Technology, Yokohama-shi, Kanagawa-ken, Japan 
 2016- National Institute of Genetics, Mishima-shi, Shizuoka-ken, Japan 

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yamamoto N, Watarai N, Koyano H, Sawada K, Toyoda A, Kurokawa K, Yamada T. Analysis of genomic characteristics and their influence on metabolism in Aspergillus luchuensis albino mutants using genome sequencing. Fungal Genetics and Biology : Fg & B. 103601. PMID 34224861 DOI: 10.1016/j.fgb.2021.103601  0.42
2020 Merino N, Kawai M, Boyd ES, Colman DR, McGlynn SE, Nealson KH, Kurokawa K, Hongoh Y. Single-Cell Genomics of Novel Actinobacteria With the Wood-Ljungdahl Pathway Discovered in a Serpentinizing System. Frontiers in Microbiology. 11: 1031. PMID 32655506 DOI: 10.3389/Fmicb.2020.01031  0.412
2019 Madigan MT, Resnick SM, Kempher ML, Dohnalkova AC, Takaichi S, Wang-Otomo ZY, Toyoda A, Kurokawa K, Mori H, Tsukatani Y. Blastochloris tepida, sp. nov., a thermophilic species of the bacteriochlorophyll b-containing genus Blastochloris. Archives of Microbiology. PMID 31317227 DOI: 10.1007/S00203-019-01701-4  0.318
2019 Yachida S, Mizutani S, Shiroma H, Shiba S, Nakajima T, Sakamoto T, Watanabe H, Masuda K, Nishimoto Y, Kubo M, Hosoda F, Rokutan H, Matsumoto M, Takamaru H, Yamada M, ... ... Kurokawa K, et al. Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer. Nature Medicine. 25: 968-976. PMID 31171880 DOI: 10.1038/S41591-019-0458-7  0.451
2019 Takizawa N, Ogura Y, Fujita Y, Noda T, Shigematsu H, Hayashi T, Kurokawa K. Local structural changes of the influenza A virus ribonucleoprotein complex by single mutations in the specific residues involved in efficient genome packaging. Virology. 531: 126-140. PMID 30875489 DOI: 10.1016/J.Virol.2019.03.004  0.3
2018 Nishiyama E, Higashi K, Mori H, Suda K, Nakamura H, Omori S, Maruyama S, Hongoh Y, Kurokawa K. The Relationship Between Microbial Community Structures and Environmental Parameters Revealed by Metagenomic Analysis of Hot Spring Water in the Kirishima Area, Japan. Frontiers in Bioengineering and Biotechnology. 6: 202. PMID 30619848 DOI: 10.3389/Fbioe.2018.00202  0.312
2018 Watanabe H, Nakamura I, Mizutani S, Kurokawa Y, Mori H, Kurokawa K, Yamada T. Minor taxa in human skin microbiome contribute to the personal identification. Plos One. 13: e0199947. PMID 30044822 DOI: 10.1371/Journal.Pone.0199947  0.43
2018 Higashi K, Suzuki S, Kurosawa S, Mori H, Kurokawa K. Latent environment allocation of microbial community data. Plos Computational Biology. 14. PMID 29874232 DOI: 10.1371/Journal.Pcbi.1006143  0.481
2018 Mori H, Maruyama T, Yano M, Yamada T, Kurokawa K. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing. Bmc Systems Biology. 12: 30. PMID 29560821 DOI: 10.1186/S12918-018-0545-2  0.513
2018 Tajima N, Kanesaki Y, Sato S, Yoshikawa H, Maruyama F, Kurokawa K, Ohta H, Nishizawa T, Asayama M, Sato N. Complete Genome Sequence of the Nonheterocystous Cyanobacteriumsp. ABRG5-3. Genome Announcements. 6. PMID 29439056 DOI: 10.1128/Genomea.01608-17  0.399
2017 Okai S, Usui F, Ohta M, Mori H, Kurokawa K, Matsumoto S, Kato T, Miyauchi E, Ohno H, Shinkura R. Intestinal IgA as a modulator of the gut microbiota. Gut Microbes. 1-7. PMID 28384049 DOI: 10.1080/19490976.2017.1310357  0.301
2016 Watanabe H, Goto S, Mori H, Higashi K, Hosomichi K, Aizawa N, Takahashi N, Tsuchida M, Suzuki Y, Yamada T, Horii A, Inoue I, Kurokawa K, Narita I. Comprehensive microbiome analysis of tonsillar crypts in IgA nephropathy. Nephrology, Dialysis, Transplantation : Official Publication of the European Dialysis and Transplant Association - European Renal Association. PMID 27683270 DOI: 10.1093/Ndt/Gfw343  0.441
2016 Okai S, Usui F, Yokota S, Hori-I Y, Hasegawa M, Nakamura T, Kurosawa M, Okada S, Yamamoto K, Nishiyama E, Mori H, Yamada T, Kurokawa K, Matsumoto S, Nanno M, et al. High-affinity monoclonal IgA regulates gut microbiota and prevents colitis in mice. Nature Microbiology. 1: 16103. PMID 27562257 DOI: 10.1038/Nmicrobiol.2016.103  0.464
2016 Matsuki T, Yahagi K, Mori H, Matsumoto H, Hara T, Tajima S, Ogawa E, Kodama H, Yamamoto K, Yamada T, Matsumoto S, Kurokawa K. A key genetic factor for fucosyllactose utilization affects infant gut microbiota development. Nature Communications. 7: 11939. PMID 27340092 DOI: 10.1038/Ncomms11939  0.448
2016 Blaxter M, Danchin A, Savakis B, Fukami-Kobayashi K, Kurokawa K, Sugano S, Roberts RJ, Salzberg SL, Wu CI. Reminder to deposit DNA sequences. Science (New York, N.Y.). 352: 780. PMID 27169596 DOI: 10.1126/Science.Aaf7672  0.326
2016 Nakamura Y, Yamamoto N, Kino Y, Yamamoto N, Kamei S, Mori H, Kurokawa K, Nakashima N. Establishment of a multi-species biofilm model and metatranscriptomic analysis of biofilm and planktonic cell communities. Applied Microbiology and Biotechnology. PMID 27102130 DOI: 10.1007/S00253-016-7532-6  0.315
2016 Tajima N, Saitoh K, Sato S, Maruyama F, Ichinomiya M, Yoshikawa S, Kurokawa K, Ohta H, Tabata S, Kuwata A, Sato N. Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms). Current Genetics. PMID 27091756 DOI: 10.1007/S00294-016-0598-Y  0.364
2016 Higashi K, Tobe T, Kanai A, Uyar E, Ishikawa S, Suzuki Y, Ogasawara N, Kurokawa K, Oshima T. H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes Plos Genetics. 12. DOI: 10.1371/Journal.Pgen.1005796  0.323
2015 Kato H, Ogawa N, Ohtsubo Y, Oshima K, Toyoda A, Mori H, Nagata Y, Kurokawa K, Hattori M, Fujiyama A, Tsuda M. Complete Genome Sequence of a Phenanthrene Degrader, Mycobacterium sp. Strain EPa45 (NBRC 110737), Isolated from a Phenanthrene-Degrading Consortium. Genome Announcements. 3. PMID 26184940 DOI: 10.1128/Genomea.00782-15  0.383
2015 Uchiyama T, Irie M, Mori H, Kurokawa K, Yamada T. FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data. Plos One. 10: e0126967. PMID 25974630 DOI: 10.1371/Journal.Pone.0126967  0.465
2015 Wang T, Mori H, Zhang C, Kurokawa K, Xing XH, Yamada T. DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe. Bmc Bioinformatics. 16: 96. PMID 25888481 DOI: 10.1186/S12859-015-0499-Y  0.475
2015 Yamaichi Y, Chao MC, Sasabe J, Clark L, Davis BM, Yamamoto N, Mori H, Kurokawa K, Waldor MK. High-resolution genetic analysis of the requirements for horizontal transmission of the ESBL plasmid from Escherichia coli O104:H4. Nucleic Acids Research. 43: 348-60. PMID 25477379 DOI: 10.1093/Nar/Gku1262  0.353
2015 Kojima H, Ogura Y, Yamamoto N, Togashi T, Mori H, Watanabe T, Nemoto F, Kurokawa K, Hayashi T, Fukui M. Ecophysiology of Thioploca ingrica as revealed by the complete genome sequence supplemented with proteomic evidence. The Isme Journal. 9: 1166-76. PMID 25343513 DOI: 10.1038/Ismej.2014.209  0.388
2015 Matsumura Y, Al-saari H, Mino S, Nakagawa S, Maruyama F, Ogura Y, Hayashi T, Kurokawa K, Sawabe T. Identification of a gene cluster responsible for hydrogen evolution in Vibrio tritonius strain AM2 with transcriptional analyses International Journal of Hydrogen Energy. DOI: 10.1016/J.Ijhydene.2015.05.137  0.306
2014 Yano M, Mori H, Akiyama Y, Yamada T, Kurokawa K. CLAST: CUDA implemented large-scale alignment search tool. Bmc Bioinformatics. 15: 406. PMID 25495907 DOI: 10.1186/S12859-014-0406-Y  0.516
2014 Iguchi A, Nagaya Y, Pradel E, Ooka T, Ogura Y, Katsura K, Kurokawa K, Oshima K, Hattori M, Parkhill J, Sebaihia M, Coulthurst SJ, Gotoh N, Thomson NR, Ewbank JJ, et al. Genome evolution and plasticity of Serratia marcescens, an important multidrug-resistant nosocomial pathogen. Genome Biology and Evolution. 6: 2096-110. PMID 25070509 DOI: 10.1093/Gbe/Evu160  0.356
2014 Hori K, Maruyama F, Fujisawa T, Togashi T, Yamamoto N, Seo M, Sato S, Yamada T, Mori H, Tajima N, Moriyama T, Ikeuchi M, Watanabe M, Wada H, Kobayashi K, ... ... Kurokawa K, et al. Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. Nature Communications. 5: 3978. PMID 24865297 DOI: 10.1038/Ncomms4978  0.468
2014 Sudo N, Soma A, Muto A, Iyoda S, Suh M, Kurihara N, Abe H, Tobe T, Ogura Y, Hayashi T, Kurokawa K, Ohnishi M, Sekine Y. A novel small regulatory RNA enhances cell motility in enterohemorrhagic Escherichia coli. The Journal of General and Applied Microbiology. 60: 44-50. PMID 24646762 DOI: 10.2323/Jgam.60.44  0.302
2014 Tajima N, Sato S, Maruyama F, Kurokawa K, Ohta H, Tabata S, Sekine K, Moriyama T, Sato N. Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum. Journal of Plant Research. 127: 389-97. PMID 24595640 DOI: 10.1007/S10265-014-0627-1  0.385
2014 Mori H, Maruyama F, Kato H, Toyoda A, Dozono A, Ohtsubo Y, Nagata Y, Fujiyama A, Tsuda M, Kurokawa K. Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes. Dna Research. 21: 217-227. PMID 24277737 DOI: 10.1093/Dnares/Dst052  0.388
2014 Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto J, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, ... ... Kurokawa K, et al. Addendum: Enterotypes of the human gut microbiome Nature. 506: 516-516. DOI: 10.1038/Nature13075  0.438
2013 Sawabe T, Ogura Y, Matsumura Y, Feng G, Amin AR, Mino S, Nakagawa S, Sawabe T, Kumar R, Fukui Y, Satomi M, Matsushima R, Thompson FL, Gomez-Gil B, Christen R, ... ... Kurokawa K, et al. Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov. Frontiers in Microbiology. 4: 414. PMID 24409173 DOI: 10.3389/Fmicb.2013.00414  0.401
2013 Masuda S, Hori K, Maruyama F, Ren S, Sugimoto S, Yamamoto N, Mori H, Yamada T, Sato S, Tabata S, Ohta H, Kurokawa K. Whole-Genome Sequence of the Purple Photosynthetic Bacterium Rhodovulum sulfidophilum Strain W4. Genome Announcements. 1. PMID 23929476 DOI: 10.1128/Genomea.00577-13  0.542
2013 Minegishi K, Aikawa C, Furukawa A, Watanabe T, Nakano T, Ogura Y, Ohtsubo Y, Kurokawa K, Hayashi T, Maruyama F, Nakagawa I, Eishi Y. Complete Genome Sequence of a Propionibacterium acnes Isolate from a Sarcoidosis Patient. Genome Announcements. 1. PMID 23405284 DOI: 10.1128/Genomea.00016-12  0.35
2012 Suzuki S, Ishida T, Kurokawa K, Akiyama Y. GHOSTM: a GPU-accelerated homology search tool for metagenomics. Plos One. 7: e36060. PMID 22574135 DOI: 10.1371/Journal.Pone.0036060  0.321
2012 Aikawa C, Furukawa N, Watanabe T, Minegishi K, Furukawa A, Eishi Y, Oshima K, Kurokawa K, Hattori M, Nakano K, Maruyama F, Nakagawa I, Ooshima T. Complete genome sequence of the serotype k Streptococcus mutans strain LJ23. Journal of Bacteriology. 194: 2754-5. PMID 22535936 DOI: 10.1128/Jb.00350-12  0.365
2012 Nonaka L, Maruyama F, Miyamoto M, Miyakoshi M, Kurokawa K, Masuda M. Novel Conjugative Transferable Multiple Drug Resistance Plasmid pAQU1 from Photobacterium damselae subsp. damselae Isolated from Marine Aquaculture Environment Microbes and Environments. 27: 263-272. PMID 22446310 DOI: 10.1264/Jsme2.Me11338  0.334
2012 MORI H, YAMADA T, KUROKAWA K. Current and future trends in metagenomics : Development of knowledge bases Journal of Information Processing and Management. 55: 167-175. DOI: 10.1241/Johokanri.55.167  0.408
2011 Tajima N, Sato S, Maruyama F, Kaneko T, Sasaki NV, Kurokawa K, Ohta H, Kanesaki Y, Yoshikawa H, Tabata S, Ikeuchi M, Sato N. Genomic Structure of the Cyanobacterium Synechocystis sp. PCC 6803 Strain GT-S Dna Research. 18: 393-399. PMID 21803841 DOI: 10.1093/Dnares/Dsr026  0.369
2011 Kuwahara T, Ogura Y, Oshima K, Kurokawa K, Ooka T, Hirakawa H, Itoh T, Nakayama-Imaohji H, Ichimura M, Itoh K, Ishifune C, Maekawa Y, Yasutomo K, Hattori M, Hayashi T. The Lifestyle of the Segmented Filamentous Bacterium: A Non-Culturable Gut-Associated Immunostimulating Microbe Inferred by Whole-Genome Sequencing Dna Research. 18: 291-303. PMID 21791478 DOI: 10.1093/Dnares/Dsr022  0.4
2011 Watanabe T, Maruyama F, Nozawa T, Aoki A, Okano S, Shibata Y, Oshima K, Kurokawa K, Hattori M, Nakagawa I, Abiko Y. Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, which causes periodontal disease. Journal of Bacteriology. 193: 4259-60. PMID 21705612 DOI: 10.1128/Jb.05269-11  0.372
2011 Nozawa T, Furukawa N, Aikawa C, Watanabe T, Haobam B, Kurokawa K, Maruyama F, Nakagawa I. CRISPR inhibition of prophage acquisition in Streptococcus pyogenes. Plos One. 6. PMID 21573110 DOI: 10.1371/Journal.Pone.0019543  0.356
2011 Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, ... ... Kurokawa K, et al. Enterotypes of the human gut microbiome. Nature. 473: 174-80. PMID 21508958 DOI: 10.1038/Nature09944  0.505
2011 Arumugam M, Raes J, Pelletier E, Paslier DL, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, ... ... Kurokawa K, et al. Erratum: Enterotypes of the human gut microbiome (Nature (2011) 473 (174-180)) Nature. 474: 666-666. DOI: 10.1038/Nature10187  0.445
2010 Ishikawa S, Oshima T, Kurokawa K, Kusuya Y, Ogasawara N. RNA polymerase trafficking in Bacillus subtilis cells. Journal of Bacteriology. 192: 5778-87. PMID 20817769 DOI: 10.1128/Jb.00489-10  0.311
2010 Nakayama K, Kurokawa K, Fukuhara M, Urakami H, Yamamoto S, Yamazaki K, Ogura Y, Ooka T, Hayashi T. Genome comparison and phylogenetic analysis of Orientia tsutsugamushi strains. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 17: 281-91. PMID 20682628 DOI: 10.1093/Dnares/Dsq018  0.414
2010 Mori H, Maruyama F, Kurokawa K. VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences Bmc Bioinformatics. 11: 332-332. PMID 20565810 DOI: 10.1186/1471-2105-11-332  0.397
2009 Toh H, Oshima K, Toyoda A, Ogura Y, Ooka T, Sasamoto H, Park SH, Iyoda S, Kurokawa K, Morita H, Itoh K, Taylor TD, Hayashi T, Hattori M. Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2. Journal of Bacteriology. 192: 1165-6. PMID 20008064 DOI: 10.1128/Jb.01543-09  0.376
2009 Ogura Y, Ooka T, Iguchi A, Toh H, Asadulghani, Oshima K, Kodama T, Abe H, Nakayama K, Kurokawa K, Tobe T, Hattori M, Hayashi T. Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 106: 17939-17944. PMID 19815525 DOI: 10.1073/Pnas.0903585106  0.366
2009 Maruyama F, Kobata M, Kurokawa K, Nishida K, Sakurai A, Nakano K, Nomura R, Kawabata S, Ooshima T, Nakai K, Hattori M, Hamada S, Nakagawa I. Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content Bmc Genomics. 10: 358-358. PMID 19656368 DOI: 10.1186/1471-2164-10-358  0.341
2009 Iguchi A, Thomson NR, Ogura Y, Saunders D, Ooka T, Henderson IR, Harris D, Asadulghani M, Kurokawa K, Dean P, Kenny B, Quail MA, Thurston S, Dougan G, Hayashi T, et al. Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. Journal of Bacteriology. 191: 347-54. PMID 18952797 DOI: 10.1128/Jb.01238-08  0.362
2008 Ogura Y, Abe H, Katsura K, Kurokawa K, Asadulghani, Iguchi A, Ooka T, Nakayama K, Yamashita A, Hattori M, Tobe T, Hayashi T. Systematic Identification and Sequence Analysis of the Genomic Islands of the Enteropathogenic Escherichia coli Strain B171-8 by the Combined Use of Whole-Genome PCR Scanning and Fosmid Mapping Journal of Bacteriology. 190: 6948-6960. PMID 18757547 DOI: 10.1128/Jb.00625-08  0.405
2008 Nakayama K, Yamashita A, Kurokawa K, Morimoto T, Ogawa M, Fukuhara M, Urakami H, Ohnishi M, Uchiyama I, Ogura Y, Ooka T, Oshima K, Tamura A, Hattori M, Hayashi T. The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 15: 185-99. PMID 18508905 DOI: 10.1093/Dnares/Dsn011  0.406
2008 Izutsu K, Kurokawa K, Tashiro K, Kuhara S, Hayashi T, Honda T, Iida T. Comparative genomic analysis using microarray demonstrates a strong correlation between the presence of the 80-kilobase pathogenicity island and pathogenicity in Kanagawa phenomenon-positive Vibrio parahaemolyticus strains. Infection and Immunity. 76: 1016-23. PMID 18195030 DOI: 10.1128/Iai.01535-07  0.375
2007 Ishikawa S, Ogura Y, Yoshimura M, Okumura H, Cho E, Kawai Y, Kurokawa K, Oshima T, Ogasawara N. Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 14: 155-68. PMID 17932079 DOI: 10.1093/Dnares/Dsm017  0.333
2007 Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, Toyoda A, Takami H, Morita H, Sharma VK, Srivastava TP, Taylor TD, Noguchi H, Mori H, Ogura Y, Ehrlich DS, et al. Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 14: 169-81. PMID 17916580 DOI: 10.1093/Dnares/Dsm018  0.357
2007 Goto N, Kurokawa K, Yasunaga T. Analysis of invariant sequences in 266 complete genomes. Gene. 401: 172-180. PMID 17728079 DOI: 10.1016/J.Gene.2007.07.017  0.379
2007 Kobayashi H, Akitomi J, Fujii N, Kobayashi K, Altaf-Ul-Amin M, Kurokawa K, Ogasawara N, Kanaya S. The entire organization of transcription units on the Bacillus subtilis genome. Bmc Genomics. 8: 197. PMID 17598888 DOI: 10.1186/1471-2164-8-197  0.38
2007 Dryselius R, Kurokawa K, Iida T. Vibrionaceae, a versatile bacterial family with evolutionarily conserved variability. Research in Microbiology. 158: 479-486. PMID 17590316 DOI: 10.1016/J.Resmic.2007.04.007  0.336
2007 Aoki T, Hirono I, Kurokawa K, Fukuda H, Nahary R, Eldar A, Davison AJ, Waltzek TB, Bercovier H, Hedrick RP. Genome sequences of three koi herpesvirus isolates representing the expanding distribution of an emerging disease threatening koi and common carp worldwide. Journal of Virology. 81: 5058-65. PMID 17329333 DOI: 10.1128/Jvi.00146-07  0.403
2006 Oshima T, Ishikawa S, Kurokawa K, Aiba H, Ogasawara N. Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 13: 141-53. PMID 17046956 DOI: 10.1093/Dnares/Dsl009  0.309
2006 Kinouchi M, Kurokawa K. [Special Issue: Fact Databases and Freewares] tRNAfinder: A Software System To Find All tRNA Genes in the DNA Sequence Based on the Cloverleaf Secondary Structure Journal of Computer Aided Chemistry. 7: 116-124. DOI: 10.2751/Jcac.7.116  0.319
2006 Maeno H, Altaf-Ul-Amin M, Shinbo Y, Kurokawa K, Ogasawara N, Kanaya S. Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships Ipsj Digital Courier. 2: 644-654. DOI: 10.2197/Ipsjdc.2.644  0.335
2005 Sakaguchi Y, Hayashi T, Kurokawa K, Nakayama K, Oshima K, Fujinaga Y, Ohnishi M, Ohtsubo E, Hattori M, Oguma K. The genome sequence of Clostridium botulinum type C neurotoxin-converting phage and the molecular mechanisms of unstable lysogeny Proceedings of the National Academy of Sciences of the United States of America. 102: 17472-17477. PMID 16287978 DOI: 10.1073/Pnas.0505503102  0.35
2005 Naka H, Hirono I, Kurokawa K, Aoki T. Random sequencing of genomic DNA of Photobacterium damselae subsp. piscicida Fisheries Science. 71: 1209-1216. DOI: 10.1111/J.1444-2906.2005.01085.X  0.38
2002 Ohnishi M, Terajima J, Kurokawa K, Nakayama K, Murata T, Tamura K, Ogura Y, Watanabe H, Hayashi T. Genomic diversity of enterohemorrhagic Escherichia coli O157 revealed by whole genome PCR scanning. Proceedings of the National Academy of Sciences of the United States of America. 99: 17043-8. PMID 12481030 DOI: 10.1073/Pnas.262441699  0.369
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