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Akhilesh Pandey, M.D., Ph.D. - Publications

Affiliations: 
Biological Chemistry Johns Hopkins University School of Medicine, Baltimore, MD, United States 
Area:
signaling and biomarker discovery
Website:
http://www.jhsph.edu/faculty/directory/profile/1453/Pandey/Akhilesh
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297 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Mangalaparthi KK, Patel K, Khan AA, Nair B, Kumar RV, Prasad TSK, Sidransky D, Chatterjee A, Pandey A, Gowda H. Molecular Characterization of Esophageal Squamous Cell Carcinoma Using Quantitative Proteomics. Cancers. 15. PMID 37444412 DOI: 10.3390/cancers15133302  0.303
2021 Gondkar K, Sathe G, Joshi N, Nair B, Pandey A, Kumar P. Integrated Proteomic and Phosphoproteomics Analysis of DKK3 Signaling Reveals Activated Kinase in the Most Aggressive Gallbladder Cancer. Cells. 10. PMID 33670899 DOI: 10.3390/cells10030511  0.301
2020 Sathe G, George IA, Deb B, Jain AP, Patel K, Nayak B, Karmakar S, Seth A, Pandey A, Kumar P. Urinary glycoproteomic profiling of non-muscle invasive and muscle invasive bladder carcinoma patients reveals distinct N-glycosylation pattern of CD44, MGAM, and GINM1. Oncotarget. 11: 3244-3255. PMID 32922663 DOI: 10.18632/Oncotarget.27696  0.337
2020 Pandey A, Stawiski EW, Durinck S, Gowda H, Goldstein LD, Barbhuiya MA, Schröder MS, Sreenivasamurthy SK, Kim SW, Phalke S, Suryamohan K, Lee K, Chakraborty P, Kode V, Shi X, et al. Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate. Nature Communications. 11: 4225. PMID 32839463 DOI: 10.1038/S41467-020-17880-4  0.315
2020 Puttamallesh VN, Deb B, Gondkar K, Jain A, Nair B, Pandey A, Chatterjee A, Gowda H, Kumar P. Quantitative Proteomics of Urinary Bladder Cancer Cell Lines Identify UAP1 as a Potential Therapeutic Target. Genes. 11. PMID 32650368 DOI: 10.3390/Genes11070763  0.392
2020 Sathe G, Albert M, Darrow J, Saito A, Troncoso J, Pandey A, Moghekar A. Quantitative proteomic analysis of the frontal cortex in Alzheimer's disease. Journal of Neurochemistry. PMID 32614981 DOI: 10.1111/Jnc.15116  0.309
2020 Bellad A, Bandari AK, Pandey A, Girimaji SC, Muthusamy B. A Novel Missense Variant in PHF6 Gene Causing Börjeson-Forssman-Lehman Syndrome. Journal of Molecular Neuroscience : Mn. PMID 32399860 DOI: 10.1007/S12031-020-01560-5  0.307
2020 Babu N, Pinto SM, Biswas M, Subbannayya T, Rajappa M, Mohan SV, Advani J, Rajagopalan P, Sathe G, Syed N, Radhakrishna VD, Muthusamy O, Navani S, Kumar RV, Gopisetty G, ... ... Pandey A, et al. Phosphoproteomic analysis identifies CLK1 as a novel therapeutic target in gastric cancer. Gastric Cancer : Official Journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association. PMID 32333232 DOI: 10.1007/S10120-020-01062-8  0.404
2020 Sathe G, Mangalaparthi KK, Jain A, Darrow J, Troncoso J, Albert M, Moghekar A, Pandey A. Multiplexed Phosphoproteomic Study of Brain in Patients with Alzheimer's Disease and Age-Matched Cognitively Healthy Controls. Omics : a Journal of Integrative Biology. PMID 32182160 DOI: 10.1089/Omi.2019.0191  0.323
2020 Renuse S, Madugundu AK, Jung JH, Byeon SK, Goldschmidt HL, Tahir R, Meyers D, Kim DI, Cutler J, Kim KP, Wu X, Huganir RL, Pandey A. Signature Fragment Ions of Biotinylated Peptides. Journal of the American Society For Mass Spectrometry. PMID 31939678 DOI: 10.1021/Jasms.9B00024  0.311
2019 Creed M, Baldeosingh R, Eberly CL, Schlee CS, Kim M, Cutler JA, Pandey A, Civin CI, Fossett NG, Kingsbury TJ. PAX-SIX-EYA-DACH Network modulates GATA-FOG function in fly hematopoiesis and human erythropoiesis. Development (Cambridge, England). PMID 31806659 DOI: 10.1242/Dev.177022  0.344
2019 Gondkar K, Patel K, Patil Okaly GV, Nair B, Pandey A, Gowda H, Kumar P. Dickkopf Homolog 3 Acts as a Potential Tumor Suppressor in Gallbladder Cancer. Frontiers in Oncology. 9: 1121. PMID 31737564 DOI: 10.3389/Fonc.2019.01121  0.333
2019 Maus A, Kemp J, Milosevic D, Renuse S, Pandey A, Singh RJ, Grebe SKG. Center of Mass Calculation in Combination with MS/MS allows Robust Identification of Single Amino Acid Polymorphisms in Clinical Measurements of Insulin-Like Growth Factor 1. Journal of Proteome Research. PMID 31736316 DOI: 10.1021/Acs.Jproteome.9B00494  0.3
2019 Shinde V, Hu N, Renuse S, Mahale A, Pandey A, Eberhart C, Stone D, Al-Swailem SA, Maktabi A, Chakravarti S. Mapping Keratoconus Molecular Substrates by Multiplexed High-Resolution Proteomics of Unpooled Corneas. Omics : a Journal of Integrative Biology. PMID 31651220 DOI: 10.1089/Omi.2019.0143  0.419
2019 Dalton WB, Helmenstine E, Walsh N, Gondek LP, Kelkar DS, Read A, Natrajan R, Christenson ES, Roman B, Das S, Zhao L, Leone RD, Shinn D, Groginski T, Madugundu AK, ... ... Pandey A, et al. Hotspot SF3B1 mutations induce metabolic reprogramming and vulnerability to serine deprivation. The Journal of Clinical Investigation. 130. PMID 31393856 DOI: 10.1172/Jci125022  0.333
2019 Mun DG, Nam D, Kim H, Pandey A, Lee SW. Accurate Precursor Mass Assignment Improves Peptide Identification in Data-Independent Acquisition Mass Spectrometry. Analytical Chemistry. PMID 31247731 DOI: 10.1021/Acs.Analchem.9B01474  0.304
2019 Madugundu AK, Na CH, Nirujogi RS, Renuse S, Kim KP, Burns KH, Wilks C, Langmead B, Ellis SE, Collado-Torres L, Halushka MK, Kim MS, Pandey A. Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial cells. Proteomics. e1800315. PMID 30983154 DOI: 10.1002/Pmic.201800315  0.421
2019 Na CH, Sharma N, Madugundu AK, Chen R, Atalar Aksit M, Rosson GD, Cutting GR, Pandey A. Integrated transcriptomic and proteomic analysis of human eccrine sweat glands identifies missing and novel proteins. Molecular & Cellular Proteomics : McP. PMID 30979791 DOI: 10.1074/Mcp.Ra118.001101  0.372
2019 Subbannayya T, Leal-Rojas P, Zhavoronkov A, Ozerov IV, Korzinkin M, Babu N, Radhakrishnan A, Chavan S, Raja R, Pinto SM, Patil AH, Barbhuiya MA, Kumar P, Guerrero-Preston R, Navani S, ... ... Pandey A, et al. PIM1 kinase promotes gallbladder cancer cell proliferation via inhibition of proline-rich Akt substrate of 40 kDa (PRAS40). Journal of Cell Communication and Signaling. PMID 30666556 DOI: 10.1007/S12079-018-00503-5  0.398
2019 Creed M, Eberly C, Cutler J, Kim M, Pandey A, Civin CI, Kingsbury TJ. SIX1 Transcription Factor Enhances Human Erythropoiesis Via GATA1 Blood. 134: 3503-3503. DOI: 10.1182/Blood-2019-131203  0.351
2019 Sadras T, Martin M, Kim-Sing L, Cutler J, Lenz G, Knapp AM, Ghergus D, Delmotte F, Schleiss C, Korganow A, Soulas-Sprauel P, Chen Z, Pandey A, Weinstock DM, Jumaa H, et al. Co-Expression of SYK and ZAP70 Subverts Negative B-Cell Selection and Enables Oncogenic Signaling in Multiple B-Cell Malignancies Blood. 134: 295-295. DOI: 10.1182/Blood-2019-128999  0.321
2018 Yelamanchi SD, Tyagi A, Mohanty V, Dutta P, Korbonits M, Chavan S, Advani J, Madugundu AK, Dey G, Datta KK, Rajyalakshmi M, Sahasrabuddhe NA, Chaturvedi A, Kumar A, Das AA, ... ... Pandey A, et al. Proteomic Analysis of the Human Anterior Pituitary Gland. Omics : a Journal of Integrative Biology. 22: 759-769. PMID 30571610 DOI: 10.1089/Omi.2018.0160  0.352
2018 Pertea M, Shumate A, Pertea G, Varabyou A, Breitwieser FP, Chang YC, Madugundu AK, Pandey A, Salzberg SL. CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise. Genome Biology. 19: 208. PMID 30486838 DOI: 10.1186/S13059-018-1590-2  0.309
2018 Wu X, Zahari MS, Renuse S, Sahasrabuddhe NA, Chaerkady R, Kim MS, Fackler MJ, Stampfer M, Gabrielson E, Sukumar S, Pandey A. Correction to: Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts. Clinical Proteomics. 15: 37. PMID 30479584 DOI: 10.1186/S12014-018-9210-4  0.332
2018 Sathe G, Na CH, Renuse S, Madugundu A, Albert M, Moghekar A, Pandey A. Phosphotyrosine profiling of human cerebrospinal fluid. Clinical Proteomics. 15: 29. PMID 30220890 DOI: 10.1186/S12014-018-9205-1  0.314
2018 Wu X, Zahari MS, Renuse S, Sahasrabuddhe NA, Chaerkady R, Kim MS, Fackler MJ, Stampfer M, Gabrielson E, Sukumar S, Pandey A. Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts. Clinical Proteomics. 15: 21. PMID 29946230 DOI: 10.1186/S12014-018-9197-X  0.32
2018 Selvan LDN, Danda R, Madugundu AK, Puttamallesh VN, Sathe GJ, Krishnan UM, Khetan V, Rishi P, Prasad TSK, Pandey A, Krishnakumar S, Gowda H, Elchuri SV. Phosphoproteomics of Retinoblastoma: A Pilot Study Identifies Aberrant Kinases. Molecules (Basel, Switzerland). 23. PMID 29914080 DOI: 10.3390/Molecules23061454  0.419
2018 Danda R, Ganapathy K, Sathe G, Madugundu AK, Krishnan UM, Khetan V, Rishi P, Gowda H, Pandey A, Subramanian K, Prasad TK, Elchuri SV. Membrane Proteome of Invasive Retinoblastoma: Differential Proteins and Biomarkers. Proteomics. Clinical Applications. e1700101. PMID 29742327 DOI: 10.1002/Prca.201700101  0.327
2018 Barbhuiya MA, Kashyap MK, Puttamallesh VN, Kumar RV, Wu X, Pandey A, Gowda H. Identification of spleen tyrosine kinase as a potential therapeutic target for esophageal squamous cell carcinoma using reverse phase protein arrays. Oncotarget. 9: 18422-18434. PMID 29719615 DOI: 10.18632/Oncotarget.24853  0.669
2018 Lee SE, Song J, Bösl K, Müller AC, Vitko D, Bennett KL, Superti-Furga G, Pandey A, Kandasamy RK, Kim MS. Proteogenomic Analysis to Identify Missing Proteins from Haploid Cell Lines. Proteomics. PMID 29474001 DOI: 10.1002/Pmic.201700386  0.404
2018 Wang Z, Kim MS, Martinez Ferrando I, Koleske AJ, Pandey A, Cole PA. Analysis of Cellular Tyrosine Phosphorylation via Chemical Rescue of Conditionally Active Abl Kinase. Biochemistry. PMID 29341593 DOI: 10.1021/Acs.Biochem.7B01158  0.39
2018 Sadras T, Cutler J, Aguade-Gorgorio J, Chen Z, Cosgun KN, Pandey A, Muschen M. Cooperation between SYK and ZAP70 Kinases As a Driver of Oncogenic BCR-Signaling in B-Cell Malignancies Blood. 132: 3922-3922. DOI: 10.1182/Blood-2018-99-116954  0.366
2018 Lee S, Song J, Bösl K, Müller AC, Vitko D, Bennett KL, Superti-Furga G, Pandey A, Kandasamy RK, Kim M. Front Cover: Proteogenomic Analysis to Identify Missing Proteins from Haploid Cell Lines Proteomics. 18: 1870061. DOI: 10.1002/Pmic.201870061  0.346
2017 Kim DI, Cutler JA, Na CH, Reckel S, Renuse S, Madugundu AK, Tahir R, Goldschmidt HL, Reddy KL, Huganir RL, Wu X, Zachara NE, Hantschel O, Pandey A. BioSITe - a method for direct detection and quantitation of site-specific biotinylation. Journal of Proteome Research. PMID 29249144 DOI: 10.1021/Acs.Jproteome.7B00775  0.346
2017 Li Z, Cheng Z, Raghothama C, Cui Z, Liu K, Li X, Jiang C, Jiang W, Tan M, Ni X, Pandey A, Liu JO, Dang Y. USP9X controls translation efficiency via deubiquitination of eukaryotic translation initiation factor 4A1. Nucleic Acids Research. PMID 29228324 DOI: 10.1093/Nar/Gkx1226  0.344
2017 Na CH, Barbhuiya M, Kim MS, Verbruggen S, Eacker S, Pletnikova O, Troncoso J, Halushka M, Menschaert G, Overall C, Pandey A. Discovery of non-canonical translation initiation sites through mass spectrometric analysis of protein N-termini. Genome Research. PMID 29162641 DOI: 10.1101/Gr.226050.117  0.348
2017 McCall MN, Kim MS, Adil M, Patil AH, Lu Y, Mitchell CJ, Leal-Rojas P, Xu J, Kumar M, Dawson VL, Dawson TM, Baras AS, Rosenberg AZ, Arking DE, Burns KH, Pandey A, et al. Toward the human cellular microRNAome. Genome Research. PMID 28877962 DOI: 10.1101/Gr.222067.117  0.333
2017 Sreenivasamurthy SK, Madugundu AK, Patil AH, Dey G, Mohanty AK, Kumar M, Patel K, Wang C, Kumar A, Pandey A, Prasad TSK. Mosquito-Borne Diseases and Omics: Tissue-Restricted Expression and Alternative Splicing Revealed by Transcriptome Profiling of Anopheles stephensi. Omics : a Journal of Integrative Biology. PMID 28708456 DOI: 10.1089/Omi.2017.0073  0.308
2017 Weber H, Valbuena JR, Barbhuiya MA, Stein S, Kunkel H, García P, Bizama C, Riquelme I, Espinoza JA, Kurtz SE, Tyner JW, Calderon JF, Corvalán AH, Grez M, Pandey A, et al. Small molecule inhibitor screening identifified HSP90 inhibitor 17-AAG as potential therapeutic agent for gallbladder cancer. Oncotarget. PMID 28412732 DOI: 10.18632/Oncotarget.15410  0.334
2017 Zhang X, Maity T, Kashyap MK, Bansal M, Venugopalan A, Singh S, Awasthi S, Marimuthu A, Jacob HK, Belkina N, Pitts S, Cultraro CM, Gao S, Kirkali F, Biswas R, ... ... Pandey A, et al. Quantitative tyrosine phosphoproteomics of EGFR tyrosine kinase inhibitor-treated lung adenocarcinoma cells reveals potential novel biomarkers of therapeutic response. Molecular & Cellular Proteomics : McP. PMID 28331001 DOI: 10.1074/Mcp.M117.067439  0.643
2017 Lv DW, Zhong J, Zhang K, Pandey A, Li R. Understanding Epstein-Barr Virus Life Cycle with Proteomics: A Temporal Analysis of Ubiquitination During Virus Reactivation. Omics : a Journal of Integrative Biology. 21: 27-37. PMID 28271981 DOI: 10.1089/Omi.2016.0158  0.357
2017 Verma R, Pinto SM, Patil AH, Advani J, Subba P, Kumar M, Sharma J, Dey G, Ravikumar R, Buggi S, Satishchandra P, Sharma K, Suar M, Tripathy SP, Chauhan DS, ... ... Pandey A, et al. Quantitative proteomic and phosphoproteomic analysis of H37Ra and H37Rv strains of Mycobacterium tuberculosis. Journal of Proteome Research. PMID 28241730 DOI: 10.1021/Acs.Jproteome.6B00983  0.348
2017 Cutler JA, Tahir R, Sreenivasamurthy SK, Mitchell C, Renuse S, Nirujogi RS, Patil AH, Heydarian M, Wong X, Wu X, Huang TC, Kim MS, Reddy K, Pandey A. Differential signaling through p190 and p210 BCR-ABL fusion proteins revealed by interactome and phosphoproteome analysis. Leukemia. PMID 28210003 DOI: 10.1038/Leu.2017.61  0.359
2016 Prasad TS, Mohanty AK, Kumar M, Sreenivasamurthy SK, Dey G, Nirujogi RS, Pinto SM, Madugundu AK, Patil AH, Advani J, Manda SS, Gupta MK, Dwivedi SB, Kelkar DS, Hall B, ... ... Pandey A, et al. Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes. Genome Research. PMID 28003436 DOI: 10.1101/Gr.201368.115  0.316
2016 Wu X, Zahari MS, Renuse S, Kelkar DS, Bharbuiya MA, Rojas PL, Stearns V, Gabrielson E, Malla P, Sukumar S, Mahajan NP, Pandey A. The non-receptor tyrosine kinase TNK2/ACK1 is a novel therapeutic target in triple negative breast cancer. Oncotarget. PMID 27902967 DOI: 10.18632/Oncotarget.13579  0.32
2016 Ugolino J, Ji YJ, Conchina K, Chu J, Nirujogi RS, Pandey A, Brady NR, Hamacher-Brady A, Wang J. Loss of C9orf72 Enhances Autophagic Activity via Deregulated mTOR and TFEB Signaling. Plos Genetics. 12: e1006443. PMID 27875531 DOI: 10.1371/Journal.Pgen.1006443  0.353
2016 Danda R, Ganapathy K, Sathe G, Madugundu AK, Ramachandran S, Krishnan UM, Khetan V, Rishi P, Keshava Prasad TS, Pandey A, Krishnakumar S, Gowda H, Elchuri SV. Proteomic profiling of retinoblastoma by high resolution mass spectrometry. Clinical Proteomics. 13: 29. PMID 27799869 DOI: 10.1186/S12014-016-9128-7  0.36
2016 Radhakrishnan A, Nanjappa V, Raja R, Sathe G, Puttamallesh VN, Jain AP, Pinto SM, Balaji SA, Chavan S, Sahasrabuddhe NA, Mathur PP, Kumar MM, Prasad TS, Santosh V, Sukumar G, ... ... Pandey A, et al. A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma. Scientific Reports. 6: 36132. PMID 27796319 DOI: 10.1038/Srep36132  0.363
2016 Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, ... ... Pandey A, et al. Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer. Cell. PMID 27372738 DOI: 10.1016/J.Cell.2016.05.069  0.376
2016 Mitchell CJ, Kim MS, Na CH, Pandey A. PyQuant: a versatile framework for analysis of quantitative mass spectrometry data. Molecular & Cellular Proteomics : McP. PMID 27231314 DOI: 10.1074/Mcp.O115.056879  0.303
2016 Mitchell CJ, Kim MS, Zhong J, Nirujogi RS, Bose AK, Pandey A. Unbiased identification of substrates of protein tyrosine phosphatase ptp-3 in C. elegans. Molecular Oncology. PMID 27067626 DOI: 10.1016/J.Molonc.2016.03.003  0.343
2016 Radhakrishnan A, Nanjappa V, Raja R, Sathe G, Chavan S, Pandey A, Patil AH, Solanki H, Renuse S, Sahasrabuddhe NA, Mathur PP, Prasad TS, Kumar P, Califano JA, Sidransky D, ... Pandey A, et al. Dysregulation of splicing proteins in head and neck squamous cell carcinoma. Cancer Biology & Therapy. 0. PMID 26853621 DOI: 10.1080/15384047.2016.1139234  0.434
2016 Jhaveri DT, Kim MS, Thompson ED, Huang L, Sharma R, Klein AP, Zheng L, Le DT, Laheru DA, Pandey A, Jaffee EM, Anders RA. Using Quantitative Seroproteomics to Identify Antibody Biomarkers in Pancreatic Cancer. Cancer Immunology Research. PMID 26842750 DOI: 10.1158/2326-6066.Cir-15-0200-T  0.332
2016 Cutler J, Tahir R, Kostadinov R, Sekhar R, Huang T, Pandey A, Brown P, Heydarian M, Reddy K. Proteomic/Transcriptomic Signatures of Infant MLL-r Rearranged B-ALL at Diagnosis and Relapse Reveal Lineage Plasticity and Diagnostic Heterogeneity Blood. 128: 2697-2697. DOI: 10.1182/Blood.V128.22.2697.2697  0.316
2015 Pawar H, Srikanth SM, Kashyap MK, Sathe G, Chavan S, Singal M, Manju HC, Kumar KV, Vijayakumar M, Sirdeshmukh R, Pandey A, Prasad TS, Gowda H, Kumar RV. Downregulation of S100 Calcium Binding Protein A9 in Esophageal Squamous Cell Carcinoma. Thescientificworldjournal. 2015: 325721. PMID 26788548 DOI: 10.1155/2015/325721  0.66
2015 Li R, Liao G, Nirujogi RS, Pinto SM, Shaw PG, Huang TC, Wan J, Qian J, Gowda H, Wu X, Lv DW, Zhang K, Manda SS, Pandey A, Hayward SD. Phosphoproteomic Profiling Reveals Epstein-Barr Virus Protein Kinase Integration of DNA Damage Response and Mitotic Signaling. Plos Pathogens. 11: e1005346. PMID 26714015 DOI: 10.1371/Journal.Ppat.1005346  0.413
2015 Kim MS, Zhong J, Pandey A. Common errors in mass spectrometry-based analysis of post-translational modifications. Proteomics. PMID 26667783 DOI: 10.1002/Pmic.201500355  0.308
2015 Mitchell CJ, Getnet D, Kim MS, Manda SS, Kumar P, Huang TC, Pinto SM, Nirujogi RS, Iwasaki M, Shaw PG, Wu X, Zhong J, Chaerkady R, Marimuthu A, Muthusamy B, ... Pandey A, et al. A multi-omic analysis of human naïve CD4+ T cells. Bmc Systems Biology. 9: 75. PMID 26542228 DOI: 10.1186/S12918-015-0225-4  0.343
2015 Subbannayya T, Leal-Rojas P, Barbhuiya MA, Raja R, Renuse S, Sathe G, Pinto SM, Syed N, Nanjappa V, Patil AH, Garcia P, Sahasrabuddhe NA, Nair B, Guerrero-Preston R, Navani S, ... ... Pandey A, et al. Macrophage migration inhibitory factor - a therapeutic target in gallbladder cancer. Bmc Cancer. 15: 843. PMID 26530123 DOI: 10.1186/S12885-015-1855-Z  0.347
2015 Beachley VZ, Wolf MT, Sadtler K, Manda SS, Jacobs H, Blatchley MR, Bader JS, Pandey A, Pardoll D, Elisseeff JH. Tissue matrix arrays for high-throughput screening and systems analysis of cell function. Nature Methods. PMID 26480475 DOI: 10.1038/Nmeth.3619  0.307
2015 Nanjappa V, Renuse S, Sathe GJ, Raja R, Syed N, Radhakrishnan A, Subbannayya T, Patil A, Marimuthu A, Sahasrabuddhe NA, Guerrero-Preston R, Somani BL, Nair B, Kundu GC, Prasad TS, ... ... Pandey A, et al. Chronic exposure to chewing tobacco selects for overexpression of stearoyl-CoA desaturase in normal oral keratinocytes. Cancer Biology & Therapy. 0. PMID 26391970 DOI: 10.1080/15384047.2015.1078022  0.305
2015 Wu X, Zahari MS, Ma B, Liu R, Renuse S, Sahasrabuddhe NA, Chen L, Chaerkady R, Kim MS, Zhong J, Jelinek C, Barbhuiya MA, Leal-Rojas P, Yang Y, Kashyap MK, ... Pandey A, et al. Global phosphotyrosine survey in triple-negative breast cancer reveals activation of multiple tyrosine kinase signaling pathways. Oncotarget. PMID 26356563 DOI: 10.18632/Oncotarget.5020  0.678
2015 Wu X, Zahari MS, Renuse S, Nirujogi RS, Kim MS, Manda SS, Stearns V, Gabrielson E, Sukumar S, Pandey A. Phosphoproteomic Analysis Identifies Focal Adhesion Kinase 2 (FAK2) as a Potential Therapeutic Target for Tamoxifen Resistance in Breast Cancer. Molecular & Cellular Proteomics : McP. 14: 2887-900. PMID 26330541 DOI: 10.1074/Mcp.M115.050484  0.338
2015 Zahari MS, Wu X, Pinto SM, Nirujogi RS, Kim MS, Fetics B, Philip M, Barnes SR, Godfrey B, Gabrielson E, Nevo E, Pandey A. Phosphoproteomic profiling of tumor tissues identifies HSP27 Ser82 phosphorylation as a robust marker of early ischemia. Scientific Reports. 5: 13660. PMID 26329039 DOI: 10.1038/Srep13660  0.324
2015 Zahari MS, Wu X, Blair BG, Pinto SM, Nirujogi RS, Jelinek CA, Malhotra R, Kim MS, Park BH, Pandey A. Activating mutations in PIK3CA lead to widespread modulation of the tyrosine phosphoproteome. Journal of Proteome Research. PMID 26267517 DOI: 10.1021/Acs.Jproteome.5B00302  0.373
2015 Yu Y, Gaillard S, Phillip JM, Huang TC, Pinto SM, Tessarollo NG, Zhang Z, Pandey A, Wirtz D, Ayhan A, Davidson B, Wang TL, Shih IeM. Inhibition of Spleen Tyrosine Kinase Potentiates Paclitaxel-Induced Cytotoxicity in Ovarian Cancer Cells by Stabilizing Microtubules. Cancer Cell. 28: 82-96. PMID 26096845 DOI: 10.1016/J.Ccell.2015.05.009  0.333
2015 Sahasrabuddhe NA, Huang TC, Kumar P, Yang Y, Ghosh B, Leach SD, Chaerkady R, Pandey A. Ablation of Dicer leads to widespread perturbation of signaling pathways. Biochemical and Biophysical Research Communications. 463: 389-94. PMID 26032504 DOI: 10.1016/J.Bbrc.2015.05.077  0.374
2015 Subbannayya Y, Mir SA, Renuse S, Manda SS, Pinto SM, Puttamallesh VN, Solanki HS, Manju HC, Syed N, Sharma R, Christopher R, Vijayakumar M, Veerendra Kumar KV, Keshava Prasad TS, Ramaswamy G, ... ... Pandey A, et al. Identification of differentially expressed serum proteins in gastric adenocarcinoma. Journal of Proteomics. PMID 25952687 DOI: 10.1016/J.Jprot.2015.04.021  0.344
2015 Murthy KR, Rajagopalan P, Pinto SM, Advani J, Murthy PR, Goel R, Subbannayya Y, Balakrishnan L, Dash M, Anil AK, Manda SS, Nirujogi RS, Kelkar DS, Sathe GJ, Dey G, ... ... Pandey A, et al. Proteomics of human aqueous humor. Omics : a Journal of Integrative Biology. 19: 283-93. PMID 25933257 DOI: 10.1089/Omi.2015.0029  0.363
2015 Sharma R, Gowda H, Chavan S, Advani J, Kelkar D, Kumar GS, Bhattacharjee M, Chaerkady R, Prasad TS, Pandey A, Nagaraja D, Christopher R. Proteomic Signature of Endothelial Dysfunction Identified in the Serum of Acute Ischemic Stroke Patients by the iTRAQ-Based LC-MS Approach. Journal of Proteome Research. 14: 2466-79. PMID 25807139 DOI: 10.1021/Pr501324N  0.306
2015 Subbannayya Y, Syed N, Barbhuiya MA, Raja R, Marimuthu A, Sahasrabuddhe N, Pinto SM, Manda SS, Renuse S, Manju HC, Zameer MA, Sharma J, Brait M, Srikumar K, Roa JC, ... ... Pandey A, et al. Calcium calmodulin dependent kinase kinase 2 - a novel therapeutic target for gastric adenocarcinoma. Cancer Biology & Therapy. 16: 336-45. PMID 25756516 DOI: 10.4161/15384047.2014.972264  0.332
2015 Jamdhade MD, Pawar H, Chavan S, Sathe G, Umasankar PK, Mahale KN, Dixit T, Madugundu AK, Prasad TS, Gowda H, Pandey A, Patole MS. Comprehensive proteomics analysis of glycosomes from Leishmania donovani. Omics : a Journal of Integrative Biology. 19: 157-70. PMID 25748437 DOI: 10.1089/Omi.2014.0163  0.333
2015 Zhang X, Belkina N, Jacob HK, Maity T, Biswas R, Venugopalan A, Shaw PG, Kim MS, Chaerkady R, Pandey A, Guha U. Identifying novel targets of oncogenic EGF receptor signaling in lung cancer through global phosphoproteomics. Proteomics. 15: 340-55. PMID 25404012 DOI: 10.1002/Pmic.201400315  0.36
2015 Nirujogi RS, Wright JD, Manda SS, Zhong J, Na CH, Meyerhoff J, Benton B, Jabbour R, Willis K, Kim MS, Pandey A, Sekowski JW. Phosphoproteomic analysis reveals compensatory effects in the piriform cortex of VX nerve agent exposed rats. Proteomics. 15: 487-99. PMID 25403869 DOI: 10.1002/Pmic.201400371  0.33
2015 Blair BG, Wu X, Zahari MS, Mohseni M, Cidado J, Wong HY, Beaver JA, Cochran RL, Zabransky DJ, Croessmann S, Chu D, Toro PV, Cravero K, Pandey A, Park BH. A phosphoproteomic screen demonstrates differential dependence on HER3 for MAP kinase pathway activation by distinct PIK3CA mutations. Proteomics. 15: 318-26. PMID 25367220 DOI: 10.1002/Pmic.201400342  0.371
2015 Pinto SM, Nirujogi RS, Rojas PL, Patil AH, Manda SS, Subbannayya Y, Roa JC, Chatterjee A, Prasad TS, Pandey A. Quantitative phosphoproteomic analysis of IL-33-mediated signaling. Proteomics. 15: 532-44. PMID 25367039 DOI: 10.1002/Pmic.201400303  0.319
2015 Syed N, Barbhuiya MA, Pinto SM, Nirujogi RS, Renuse S, Datta KK, Khan AA, Srikumar K, Prasad TS, Kumar MV, Kumar RV, Chatterjee A, Pandey A, Gowda H. Phosphotyrosine profiling identifies ephrin receptor A2 as a potential therapeutic target in esophageal squamous-cell carcinoma. Proteomics. 15: 374-82. PMID 25366905 DOI: 10.1002/Pmic.201400379  0.359
2015 Syed N, Chavan S, Sahasrabuddhe NA, Renuse S, Sathe G, Nanjappa V, Radhakrishnan A, Raja R, Pinto SM, Srinivasan A, Prasad TS, Srikumar K, Gowda H, Santosh V, Sidransky D, ... ... Pandey A, et al. Silencing of high-mobility group box 2 (HMGB2) modulates cisplatin and 5-fluorouracil sensitivity in head and neck squamous cell carcinoma. Proteomics. 15: 383-93. PMID 25327479 DOI: 10.1002/Pmic.201400338  0.385
2015 Huang TC, Cutler J, Bharne S, Zhong J, Weinstock D, Tyner J, Gojo I, Civin C, Pandey A. Integrated analysis of CRLF2 signaling in acute lymphoblastic leukemia identifies Polo-like kinase 1 as a potential therapeutic target. Leukemia & Lymphoma. 56: 1524-7. PMID 25213184 DOI: 10.3109/10428194.2014.963076  0.338
2015 Cutler J, Tahir R, Han J, Nirujogi RS, Huang T, Wong X, Mallampati S, Sun X, Brown P, Reddy K, Pandey A. Differential Signaling through p190 and p210 Forms of BCR-ABL Fusion Proteins Revealed By Proteomic Analysis Blood. 126: 3651-3651. DOI: 10.1182/Blood.V126.23.3651.3651  0.331
2015 Barbhuiya MA, Subbannayya T, Leal-Rojas PA, Shahasrabudhe N, Renuse S, Patil AH, Garcia P, Navani S, Tiwari PK, Santosh V, Prasad TK, Gowda H, Yadav TD, Roa JC, Chatterjee A, ... Pandey A, et al. Su1999 Proteomic Analysis of Gallbladder Cancer to Identify Biomarkers and Therapeutic Targets Gastroenterology. 148: S-571. DOI: 10.1016/S0016-5085(15)31928-4  0.32
2014 Heydarian M, Luperchio TR, Cutler J, Mitchell CJ, Kim MS, Pandey A, Sollner-Webb B, Reddy K. Prediction of Gene Activity in Early B Cell Development Based on an Integrative Multi-Omics Analysis. Journal of Proteomics & Bioinformatics. 7. PMID 25544807 DOI: 10.4172/Jpb.1000302  0.328
2014 Wu X, Zahari MS, Renuse S, Jacob HK, Sakamuri S, Singal M, Gabrielson E, Sukumar S, Pandey A. A breast cancer cell microarray (CMA) as a rapid method to characterize candidate biomarkers. Cancer Biology & Therapy. 15: 1593-9. PMID 25535895 DOI: 10.4161/15384047.2014.961886  0.349
2014 Sahu A, Kumar S, Sreenivasamurthy SK, Selvan LD, Madugundu AK, Yelamanchi SD, Puttamallesh VN, Dey G, Anil AK, Srinivasan A, Mukherjee KK, Gowda H, Satishchandra P, Mahadevan A, Pandey A, et al. Host response profile of human brain proteome in toxoplasma encephalitis co-infected with HIV. Clinical Proteomics. 11: 39. PMID 25404878 DOI: 10.1186/1559-0275-11-39  0.346
2014 Khan AA, Sandhya VK, Singh P, Parthasarathy D, Kumar A, Advani J, Gattu R, Ranjit DV, Vaidyanathan R, Mathur PP, Prasad TS, Mac Gabhann F, Pandey A, Raju R, Gowda H. Signaling Network Map of Endothelial TEK Tyrosine Kinase. Journal of Signal Transduction. 2014: 173026. PMID 25371820 DOI: 10.1155/2014/173026  0.335
2014 Renuse S, Madugundu AK, Kumar P, Nair BG, Gowda H, Prasad TS, Pandey A. Proteomic analysis and genome annotation of Pichia pastoris, a recombinant protein expression host. Proteomics. 14: 2769-79. PMID 25346215 DOI: 10.1002/Pmic.201400267  0.371
2014 Wu X, Renuse S, Sahasrabuddhe NA, Zahari MS, Chaerkady R, Kim MS, Nirujogi RS, Mohseni M, Kumar P, Raju R, Zhong J, Yang J, Neiswinger J, Jeong JS, Newman R, ... Pandey A, et al. Activation of diverse signalling pathways by oncogenic PIK3CA mutations. Nature Communications. 5: 4961. PMID 25247763 DOI: 10.1038/Ncomms5961  0.38
2014 Tong Z, Kim MS, Pandey A, Espenshade PJ. Identification of candidate substrates for the Golgi Tul1 E3 ligase using quantitative diGly proteomics in yeast. Molecular & Cellular Proteomics : McP. 13: 2871-82. PMID 25078903 DOI: 10.1074/Mcp.M114.040774  0.342
2014 Kelkar DS, Provost E, Chaerkady R, Muthusamy B, Manda SS, Subbannayya T, Selvan LD, Wang CH, Datta KK, Woo S, Dwivedi SB, Renuse S, Getnet D, Huang TC, Kim MS, ... Pandey A, et al. Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis. Molecular & Cellular Proteomics : McP. 13: 3184-98. PMID 25060758 DOI: 10.1074/Mcp.M114.038299  0.332
2014 Manda SS, Nirujogi RS, Pinto SM, Kim MS, Datta KK, Sirdeshmukh R, Prasad TS, Thongboonkerd V, Pandey A, Gowda H. Identification and characterization of proteins encoded by chromosome 12 as part of chromosome-centric human proteome project. Journal of Proteome Research. 13: 3166-77. PMID 24960282 DOI: 10.1021/Pr401123V  0.373
2014 Dwivedi SB, Muthusamy B, Kumar P, Kim MS, Nirujogi RS, Getnet D, Ahiakonu P, De G, Nair B, Gowda H, Prasad TS, Kumar N, Pandey A, Okulate M. Brain proteomics of Anopheles gambiae. Omics : a Journal of Integrative Biology. 18: 421-37. PMID 24937107 DOI: 10.1089/Omi.2014.0007  0.331
2014 Kim MS, Zhong Y, Yachida S, Rajeshkumar NV, Abel ML, Marimuthu A, Mudgal K, Hruban RH, Poling JS, Tyner JW, Maitra A, Iacobuzio-Donahue CA, Pandey A. Heterogeneity of pancreatic cancer metastases in a single patient revealed by quantitative proteomics. Molecular & Cellular Proteomics : McP. 13: 2803-11. PMID 24895378 DOI: 10.1074/Mcp.M114.038547  0.372
2014 Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, ... Pandey A, et al. A draft map of the human proteome. Nature. 509: 575-81. PMID 24870542 DOI: 10.1038/Nature13302  0.361
2014 Thomas JK, Kim MS, Balakrishnan L, Nanjappa V, Raju R, Marimuthu A, Radhakrishnan A, Muthusamy B, Khan AA, Sakamuri S, Tankala SG, Singal M, Nair B, Sirdeshmukh R, Chatterjee A, ... Pandey A, et al. Pancreatic Cancer Database: an integrative resource for pancreatic cancer. Cancer Biology & Therapy. 15: 963-7. PMID 24839966 DOI: 10.4161/Cbt.29188  0.326
2014 Raju R, Palapetta SM, Sandhya VK, Sahu A, Alipoor A, Balakrishnan L, Advani J, George B, Kini KR, Geetha NP, Prakash HS, Prasad TS, Chang YJ, Chen L, Pandey A, et al. A Network Map of FGF-1/FGFR Signaling System. Journal of Signal Transduction. 2014: 962962. PMID 24829797 DOI: 10.1155/2014/962962  0.305
2014 Gupta MK, Jayaram S, Madugundu AK, Chavan S, Advani J, Pandey A, Thongboonkerd V, Sirdeshmukh R. Chromosome-centric human proteome project: deciphering proteins associated with glioma and neurodegenerative disorders on chromosome 12. Journal of Proteome Research. 13: 3178-90. PMID 24804578 DOI: 10.1021/Pr500023P  0.401
2014 Sahasrabuddhe NA, Huang TC, Ahmad S, Kim MS, Yang Y, Ghosh B, Leach SD, Gowda H, Somani BL, Chaerkady R, Pandey A. Regulation of PPAR-alpha pathway by Dicer revealed through proteomic analysis. Journal of Proteomics. 108: 306-15. PMID 24769236 DOI: 10.1016/J.Jprot.2014.04.027  0.326
2014 Martin I, Kim JW, Lee BD, Kang HC, Xu JC, Jia H, Stankowski J, Kim MS, Zhong J, Kumar M, Andrabi SA, Xiong Y, Dickson DW, Wszolek ZK, Pandey A, et al. Ribosomal protein s15 phosphorylation mediates LRRK2 neurodegeneration in Parkinson's disease. Cell. 157: 472-85. PMID 24725412 DOI: 10.1016/J.Cell.2014.01.064  0.318
2014 Sahasrabuddhe NA, Barbhuiya MA, Bhunia S, Subbannayya T, Gowda H, Advani J, Shrivastav BR, Navani S, Leal P, Roa JC, Chaerkady R, Gupta S, Chatterjee A, Pandey A, Tiwari PK. Identification of prosaposin and transgelin as potential biomarkers for gallbladder cancer using quantitative proteomics. Biochemical and Biophysical Research Communications. 446: 863-9. PMID 24657443 DOI: 10.1016/J.Bbrc.2014.03.017  0.368
2014 Zhong J, Sharma J, Raju R, Palapetta SM, Prasad TS, Huang TC, Yoda A, Tyner JW, van Bodegom D, Weinstock DM, Ziegler SF, Pandey A. TSLP signaling pathway map: a platform for analysis of TSLP-mediated signaling. Database : the Journal of Biological Databases and Curation. 2014: bau007. PMID 24573880 DOI: 10.1093/Database/Bau007  0.324
2014 Balakrishnan L, Nirujogi RS, Ahmad S, Bhattacharjee M, Manda SS, Renuse S, Kelkar DS, Subbannayya Y, Raju R, Goel R, Thomas JK, Kaur N, Dhillon M, Tankala SG, Jois R, ... ... Pandey A, et al. Proteomic analysis of human osteoarthritis synovial fluid. Clinical Proteomics. 11: 6. PMID 24533825 DOI: 10.1186/1559-0275-11-6  0.302
2014 Nanjappa V, Thomas JK, Marimuthu A, Muthusamy B, Radhakrishnan A, Sharma R, Ahmad Khan A, Balakrishnan L, Sahasrabuddhe NA, Kumar S, Jhaveri BN, Sheth KV, Kumar Khatana R, Shaw PG, Srikanth SM, ... ... Pandey A, et al. Plasma Proteome Database as a resource for proteomics research: 2014 update. Nucleic Acids Research. 42: D959-65. PMID 24304897 DOI: 10.1093/Nar/Gkt1251  0.319
2014 Ahn JM, Kim MS, Kim YI, Jeong SK, Lee HJ, Lee SH, Paik YK, Pandey A, Cho JY. Proteogenomic analysis of human chromosome 9-encoded genes from human samples and lung cancer tissues. Journal of Proteome Research. 13: 137-46. PMID 24274035 DOI: 10.1021/Pr400792P  0.346
2014 Selvan LD, Renuse S, Kaviyil JE, Sharma J, Pinto SM, Yelamanchi SD, Puttamallesh VN, Ravikumar R, Pandey A, Prasad TS, Harsha HC. Phosphoproteome of Cryptococcus neoformans. Journal of Proteomics. 97: 287-95. PMID 23851311 DOI: 10.1016/J.Jprot.2013.06.029  0.335
2013 Shaw PG, Chaerkady R, Wang T, Vasilatos S, Huang Y, Van Houten B, Pandey A, Davidson NE. Integrated proteomic and metabolic analysis of breast cancer progression. Plos One. 8: e76220. PMID 24086712 DOI: 10.1371/Journal.Pone.0076220  0.375
2013 Taylor MS, Ruch TR, Hsiao PY, Hwang Y, Zhang P, Dai L, Huang CR, Berndsen CE, Kim MS, Pandey A, Wolberger C, Marmorstein R, Machamer C, Boeke JD, Cole PA. Architectural organization of the metabolic regulatory enzyme ghrelin O-acyltransferase. The Journal of Biological Chemistry. 288: 32211-28. PMID 24045953 DOI: 10.1074/Jbc.M113.510313  0.302
2013 Prasad TS, Verma R, Kumar S, Nirujogi RS, Sathe GJ, Madugundu AK, Sharma J, Puttamallesh VN, Ganjiwale A, Myneedu VP, Chatterjee A, Pandey A, Harsha H, Narayana J. Proteomic analysis of purified protein derivative of Mycobacterium tuberculosis. Clinical Proteomics. 10: 8. PMID 23870090 DOI: 10.1186/1559-0275-10-8  0.312
2013 Hansen AM, Chaerkady R, Sharma J, Díaz-Mejía JJ, Tyagi N, Renuse S, Jacob HK, Pinto SM, Sahasrabuddhe NA, Kim MS, Delanghe B, Srinivasan N, Emili A, Kaper JB, Pandey A. The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence. Plos Pathogens. 9: e1003403. PMID 23785281 DOI: 10.1371/Journal.Ppat.1003403  0.375
2013 Polisetty RV, Gautam P, Gupta MK, Sharma R, Uppin MS, Challa S, Ankathi P, Purohit AK, Renu D, Harsha HC, Pandey A, Sirdeshmukh R. Heterogeneous nuclear ribonucleoproteins and their interactors are a major class of deregulated proteins in anaplastic astrocytoma: a grade III malignant glioma. Journal of Proteome Research. 12: 3128-38. PMID 23741984 DOI: 10.1021/Pr400339H  0.369
2013 Chaerkady R, Shao H, Scott SG, Pandey A, Jun AS, Chakravarti S. The keratoconus corneal proteome: loss of epithelial integrity and stromal degeneration. Journal of Proteomics. 87: 122-31. PMID 23727491 DOI: 10.1016/J.Jprot.2013.05.023  0.375
2013 Ambekar AS, Nirujogi RS, Srikanth SM, Chavan S, Kelkar DS, Hinduja I, Zaveri K, Prasad TS, Harsha HC, Pandey A, Mukherjee S. Proteomic analysis of human follicular fluid: a new perspective towards understanding folliculogenesis. Journal of Proteomics. 87: 68-77. PMID 23707233 DOI: 10.1016/J.Jprot.2013.05.017  0.326
2013 Harsha HC, Pinto SM, Pandey A. Proteomic strategies to characterize signaling pathways. Methods in Molecular Biology (Clifton, N.J.). 1007: 359-77. PMID 23666735 DOI: 10.1007/978-1-62703-392-3_16  0.373
2013 Marimuthu A, Chavan S, Sathe G, Sahasrabuddhe NA, Srikanth SM, Renuse S, Ahmad S, Radhakrishnan A, Barbhuiya MA, Kumar RV, Harsha HC, Sidransky D, Califano J, Pandey A, Chatterjee A. Identification of head and neck squamous cell carcinoma biomarker candidates through proteomic analysis of cancer cell secretome. Biochimica Et Biophysica Acta. 1834: 2308-16. PMID 23665456 DOI: 10.1016/J.Bbapap.2013.04.029  0.405
2013 Patel K, Scrimieri F, Ghosh S, Zhong J, Kim MS, Ren YR, Morgan RA, Iacobuzio-Donahue CA, Pandey A, Kern SE. FAM190A deficiency creates a cell division defect. The American Journal of Pathology. 183: 296-303. PMID 23665203 DOI: 10.1016/J.Ajpath.2013.03.020  0.349
2013 Newman RH, Hu J, Rho HS, Xie Z, Woodard C, Neiswinger J, Cooper C, Shirley M, Clark HM, Hu S, Hwang W, Jeong JS, Wu G, Lin J, Gao X, ... ... Pandey A, et al. Construction of human activity-based phosphorylation networks. Molecular Systems Biology. 9: 655. PMID 23549483 DOI: 10.1038/Msb.2013.12  0.372
2013 Muthusamy B, Thomas JK, Prasad TS, Pandey A. Access guide to human proteinpedia. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 1.21. PMID 23504933 DOI: 10.1002/0471250953.Bi0121S41  0.369
2013 Marimuthu A, Subbannayya Y, Sahasrabuddhe NA, Balakrishnan L, Syed N, Sekhar NR, Katte TV, Pinto SM, Srikanth SM, Kumar P, Pawar H, Kashyap MK, Maharudraiah J, Ashktorab H, Smoot DT, ... ... Pandey A, et al. SILAC-based quantitative proteomic analysis of gastric cancer secretome. Proteomics. Clinical Applications. 7: 355-66. PMID 23161554 DOI: 10.1002/Prca.201200069  0.635
2013 Pawar H, Maharudraiah J, Kashyap MK, Sharma J, Srikanth SM, Choudhary R, Chavan S, Sathe G, Manju HC, Kumar KV, Vijayakumar M, Sirdeshmukh R, Harsha HC, Prasad TS, Pandey A, et al. Downregulation of cornulin in esophageal squamous cell carcinoma. Acta Histochemica. 115: 89-99. PMID 22560086 DOI: 10.1016/J.Acthis.2012.04.003  0.665
2013 Huang T, Bharne SS, Cutler J, Zhong J, Weinstock DM, Tyner JW, Civin CI, Pandey A. Integrated Analysis Of CRLF2 Signaling In Acute Lymphoblastic Leukemia Identifies Polo-Like Kinase 1 As a Therapeutic Target Blood. 122: 2667-2667. DOI: 10.1182/Blood.V122.21.2667.2667  0.343
2013 Jhaveri DT, Kim M, Huang L, Sharma R, Anders RA, Pandey A, Jaffee EM. Abstract B52: A novel quantitative proteomics approach to identify proteins that elicit antibody responses in vaccinated pancreatic cancer patients. Cancer Research. 73: 2485-2485. DOI: 10.1158/1538-7445.Tumimm2012-B52  0.37
2013 Luo W, Chang R, Zhong J, Pandey A, Semenza GL. Abstract 2319: Histone demethylase JMJD2C is a coactivator for hypoxia-inducible factor 1 that is required for breast cancer progression. Cancer Research. 73: 2319-2319. DOI: 10.1158/1538-7445.Am2013-2319  0.327
2013 Sivadasan P, Palit P, Pinto SM, Sekhar NR, C HH, Pandey A, Suresh A, Hicks W, Gupta V, Sirdeshmukh R, Kuriakose MA. OP056 Oral Oncology. 49: S27. DOI: 10.1016/J.Oraloncology.2013.03.064  0.392
2012 Kumar GS, Venugopal AK, Kashyap MK, Raju R, Marimuthu A, Palapetta SM, Subbanayya Y, Goel R, Chawla A, Dikshit JB, Tata P, Harsha HC, Maharudraiah J, Ramachandra YL, Satishchandra P, ... ... Pandey A, et al. Gene Expression Profiling of Tuberculous Meningitis Co-infected with HIV. Journal of Proteomics & Bioinformatics. 5: 235-244. PMID 27053842 DOI: 10.4172/Jpb.1000243  0.622
2012 Telikicherla D, Maharudraiah J, Pawar H, Marimuthu A, Kashyap MK, Ramachandra YL, Roa JC, Pandey A. Overexpression of Kinesin Associated Protein 3 (KIFAP3) in Breast Cancer. Journal of Proteomics & Bioinformatics. 5: 122-126. PMID 26843789 DOI: 10.4172/Jpb.1000223  0.666
2012 Kashyap MK, Pawar HA, Keerthikumar S, Sharma J, Goel R, Mahmood R, Kumar MV, Kumar KV, Pandey A, Kumar RV, Prasad TS, Harsha HC. Evaluation of protein expression pattern of stanniocalcin 2, insulin-like growth factor-binding protein 7, inhibin beta A and four and a half LIM domains 1 in esophageal squamous cell carcinoma. Cancer Biomarkers : Section a of Disease Markers. 12: 1-9. PMID 23321464 DOI: 10.3233/Cbm-120289  0.675
2012 Kumar GS, Venugopal AK, Mahadevan A, Renuse S, Harsha HC, Sahasrabuddhe NA, Pawar H, Sharma R, Kumar P, Rajagopalan S, Waddell K, Ramachandra YL, Satishchandra P, Chaerkady R, Prasad TS, ... ... Pandey A, et al. Quantitative proteomics for identifying biomarkers for tuberculous meningitis. Clinical Proteomics. 9: 12. PMID 23198679 DOI: 10.1186/1559-0275-9-12  0.389
2012 Luo W, Chang R, Zhong J, Pandey A, Semenza GL. Histone demethylase JMJD2C is a coactivator for hypoxia-inducible factor 1 that is required for breast cancer progression. Proceedings of the National Academy of Sciences of the United States of America. 109: E3367-76. PMID 23129632 DOI: 10.1073/Pnas.1217394109  0.33
2012 Ren YR, Chaerkady R, Hu S, Wan J, Qian J, Zhu H, Pandey A, Kern SE. Unbiased discovery of interactions at a control locus driving expression of the cancer-specific therapeutic and diagnostic target, mesothelin. Journal of Proteome Research. 11: 5301-10. PMID 23025254 DOI: 10.1021/Pr300797V  0.415
2012 Kim MS, Kuppireddy SV, Sakamuri S, Singal M, Getnet D, Harsha HC, Goel R, Balakrishnan L, Jacob HK, Kashyap MK, Tankala SG, Maitra A, Iacobuzio-Donahue CA, Jaffee E, Goggins MG, ... ... Pandey A, et al. Rapid characterization of candidate biomarkers for pancreatic cancer using cell microarrays (CMAs). Journal of Proteome Research. 11: 5556-63. PMID 22985314 DOI: 10.1021/Pr300483R  0.66
2012 van Bodegom D, Zhong J, Kopp N, Dutta C, Kim MS, Bird L, Weigert O, Tyner J, Pandey A, Yoda A, Weinstock DM. Differences in signaling through the B-cell leukemia oncoprotein CRLF2 in response to TSLP and through mutant JAK2. Blood. 120: 2853-63. PMID 22915648 DOI: 10.1182/Blood-2012-02-413252  0.337
2012 Renuse S, Harsha HC, Kumar P, Acharya PK, Sharma J, Goel R, Kumar GS, Raju R, Prasad TS, Slotta T, Pandey A. Proteomic analysis of an unsequenced plant--Mangifera indica. Journal of Proteomics. 75: 5793-6. PMID 22906602 DOI: 10.1016/J.Jprot.2012.08.003  0.355
2012 Telikicherla D, Marimuthu A, Kashyap MK, Ramachandra YL, Mohan S, Roa JC, Maharudraiah J, Pandey A. Overexpression of ribosome binding protein 1 (RRBP1) in breast cancer. Clinical Proteomics. 9: 7. PMID 22709790 DOI: 10.1186/1559-0275-9-7  0.663
2012 Bhattacharjee M, Raju R, Radhakrishnan A, Nanjappa V, Muthusamy B, Singh K, Kuppusamy D, Lingala BT, Pan A, Mathur PP, Harsha HC, Prasad TS, Atkins GJ, Pandey A, Chatterjee A. A Bioinformatics Resource for TWEAK-Fn14 Signaling Pathway. Journal of Signal Transduction. 2012: 376470. PMID 22649723 DOI: 10.1155/2012/376470  0.333
2012 Pawar H, Sahasrabuddhe NA, Renuse S, Keerthikumar S, Sharma J, Kumar GS, Venugopal A, Sekhar NR, Kelkar DS, Nemade H, Khobragade SN, Muthusamy B, Kandasamy K, Harsha HC, Chaerkady R, ... ... Pandey A, et al. A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani. Proteomics. 12: 832-44. PMID 22539434 DOI: 10.1002/Pmic.201100505  0.33
2012 Ferrando IM, Chaerkady R, Zhong J, Molina H, Jacob HK, Herbst-Robinson K, Dancy BM, Katju V, Bose R, Zhang J, Pandey A, Cole PA. Identification of targets of c-Src tyrosine kinase by chemical complementation and phosphoproteomics. Molecular & Cellular Proteomics : McP. 11: 355-69. PMID 22499769 DOI: 10.1074/Mcp.M111.015750  0.366
2012 Zhong J, Kim MS, Chaerkady R, Wu X, Huang TC, Getnet D, Mitchell CJ, Palapetta SM, Sharma J, O'Meally RN, Cole RN, Yoda A, Moritz A, Loriaux MM, Rush J, ... ... Pandey A, et al. TSLP signaling network revealed by SILAC-based phosphoproteomics. Molecular & Cellular Proteomics : McP. 11: M112.017764. PMID 22345495 DOI: 10.1074/Mcp.M112.017764  0.406
2012 Nagaraj SH, Harsha HC, Reverter A, Colgrave ML, Sharma R, Andronicos N, Hunt P, Menzies M, Lees MS, Sekhar NR, Pandey A, Ingham A. Proteomic analysis of the abomasal mucosal response following infection by the nematode, Haemonchus contortus, in genetically resistant and susceptible sheep. Journal of Proteomics. 75: 2141-52. PMID 22285630 DOI: 10.1016/J.Jprot.2012.01.016  0.324
2012 Polisetty RV, Gautam P, Sharma R, Harsha HC, Nair SC, Gupta MK, Uppin MS, Challa S, Puligopu AK, Ankathi P, Purohit AK, Chandak GR, Pandey A, Sirdeshmukh R. LC-MS/MS analysis of differentially expressed glioblastoma membrane proteome reveals altered calcium signaling and other protein groups of regulatory functions. Molecular & Cellular Proteomics : McP. 11: M111.013565. PMID 22219345 DOI: 10.1074/Mcp.M111.013565  0.414
2012 Prasad TS, Harsha HC, Keerthikumar S, Sekhar NR, Selvan LD, Kumar P, Pinto SM, Muthusamy B, Subbannayya Y, Renuse S, Chaerkady R, Mathur PP, Ravikumar R, Pandey A. Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry. Journal of Proteome Research. 11: 247-60. PMID 22129275 DOI: 10.1021/Pr200827K  0.338
2012 Agyeman AS, Chaerkady R, Shaw PG, Davidson NE, Visvanathan K, Pandey A, Kensler TW. Transcriptomic and proteomic profiling of KEAP1 disrupted and sulforaphane-treated human breast epithelial cells reveals common expression profiles. Breast Cancer Research and Treatment. 132: 175-87. PMID 21597922 DOI: 10.1007/S10549-011-1536-9  0.352
2012 Wu X, Sahasrabuddhe NA, Renuse S, Zahari S, Chaerkady R, Mohseni M, Yang J, Kim M, Zhong J, Qian J, Zhu H, Vogelstein B, Park BH, Pandey A. Abstract 985: Dissecting PI3K-AKT pathway by phosphoproteomic profiling of PIK3CA knock-in mutants Cancer Research. 72: 985-985. DOI: 10.1158/1538-7445.Am2012-985  0.39
2012 Wu X, Renuse S, Chen L, Chaerkady R, Kim M, Zahari S, Sahasrabuddhe N, Zhong J, Yang Y, Kashyap M, Marimuthu A, Ling M, Fackler MJ, Merino V, Zhang Z, ... ... Pandey A, et al. Abstract 4797: Global phosphotyrosine survey reveals the evidence of activation of multiple tyrosine kinase signaling pathways in basal-like breast cancer cells Cancer Research. 72: 4797-4797. DOI: 10.1158/1538-7445.Am2012-4797  0.688
2012 Kim M, Chaerkady R, Wu X, O'meally R, Kuppireddy SV, Zhong J, Jacob HK, Marimuthu A, Kashyap MK, Cole R, Iacobuzio-Donahue C, Maitra A, Pandey A. Abstract 1269: Activation of diverse signaling pathways in pancreatic cancer revealed by phosphoproteomics Cancer Research. 72: 1269-1269. DOI: 10.1158/1538-7445.Am2012-1269  0.684
2011 Marimuthu A, Jacob HK, Jakharia A, Subbannayya Y, Keerthikumar S, Kashyap MK, Goel R, Balakrishnan L, Dwivedi S, Pathare S, Dikshit JB, Maharudraiah J, Singh S, Sameer Kumar GS, Vijayakumar M, ... ... Pandey A, et al. Gene Expression Profiling of Gastric Cancer. Journal of Proteomics & Bioinformatics. 4: 74-82. PMID 27030788 DOI: 10.4172/Jpb.1000170  0.651
2011 Goel R, Harsha HC, Pandey A, Prasad TS. Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. Molecular Biosystems. 8: 453-63. PMID 22159132 DOI: 10.1039/C1Mb05340J  0.398
2011 Barbhuiya MA, Sahasrabuddhe NA, Pinto SM, Muthusamy B, Singh TD, Nanjappa V, Keerthikumar S, Delanghe B, Harsha HC, Chaerkady R, Jalaj V, Gupta S, Shrivastav BR, Tiwari PK, Pandey A. Comprehensive proteomic analysis of human bile. Proteomics. 11: 4443-53. PMID 22114102 DOI: 10.1002/Pmic.201100197  0.342
2011 Chaerkady R, Kelkar DS, Muthusamy B, Kandasamy K, Dwivedi SB, Sahasrabuddhe NA, Kim MS, Renuse S, Pinto SM, Sharma R, Pawar H, Sekhar NR, Mohanty AK, Getnet D, Yang Y, ... ... Pandey A, et al. A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry. Genome Research. 21: 1872-81. PMID 21795387 DOI: 10.1101/Gr.127951.111  0.335
2011 Chaerkady R, Letzen B, Renuse S, Sahasrabuddhe NA, Kumar P, All AH, Thakor NV, Delanghe B, Gearhart JD, Pandey A, Kerr CL. Quantitative temporal proteomic analysis of human embryonic stem cell differentiation into oligodendrocyte progenitor cells. Proteomics. 11: 4007-20. PMID 21770034 DOI: 10.1002/Pmic.201100107  0.356
2011 Pawar H, Kashyap MK, Sahasrabuddhe NA, Renuse S, Harsha HC, Kumar P, Sharma J, Kandasamy K, Marimuthu A, Nair B, Rajagopalan S, Maharudraiah J, Premalatha CS, Kumar KV, Vijayakumar M, ... ... Pandey A, et al. Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery. Cancer Biology & Therapy. 12: 510-22. PMID 21743296 DOI: 10.4161/Cbt.12.6.16833  0.689
2011 Raju R, Balakrishnan L, Nanjappa V, Bhattacharjee M, Getnet D, Muthusamy B, Kurian Thomas J, Sharma J, Rahiman BA, Harsha HC, Shankar S, Prasad TS, Mohan SS, Bader GD, Wani MR, ... Pandey A, et al. A comprehensive manually curated reaction map of RANKL/RANK-signaling pathway. Database : the Journal of Biological Databases and Curation. 2011: bar021. PMID 21742767 DOI: 10.1093/Database/Bar021  0.344
2011 Amanchy R, Kandasamy K, Mathivanan S, Periaswamy B, Reddy R, Yoon WH, Joore J, Beer MA, Cope L, Pandey A. Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome. Journal of Proteomics & Bioinformatics. 4: 22-35. PMID 21720494 DOI: 10.4172/Jpb.1000163  0.379
2011 Luo W, Hu H, Chang R, Zhong J, Knabel M, O'Meally R, Cole RN, Pandey A, Semenza GL. Pyruvate kinase M2 is a PHD3-stimulated coactivator for hypoxia-inducible factor 1. Cell. 145: 732-44. PMID 21620138 DOI: 10.1016/J.Cell.2011.03.054  0.315
2011 Shao H, Chaerkady R, Chen S, Pinto SM, Sharma R, Delanghe B, Birk DE, Pandey A, Chakravarti S. Proteome profiling of wild type and lumican-deficient mouse corneas. Journal of Proteomics. 74: 1895-905. PMID 21616181 DOI: 10.1016/J.Jprot.2011.04.032  0.327
2011 Marimuthu A, O'Meally RN, Chaerkady R, Subbannayya Y, Nanjappa V, Kumar P, Kelkar DS, Pinto SM, Sharma R, Renuse S, Goel R, Christopher R, Delanghe B, Cole RN, Harsha HC, ... Pandey A, et al. A comprehensive map of the human urinary proteome. Journal of Proteome Research. 10: 2734-43. PMID 21500864 DOI: 10.1021/Pr2003038  0.351
2011 Zhong J, Chaerkady R, Kandasamy K, Gucek M, Cole RN, Pandey A. The interactome of a PTB domain-containing adapter protein, Odin, revealed by SILAC. Journal of Proteomics. 74: 294-303. PMID 21081186 DOI: 10.1016/J.Jprot.2010.11.006  0.402
2011 Goel R, Muthusamy B, Pandey A, Prasad TS. Human protein reference database and human proteinpedia as discovery resources for molecular biotechnology. Molecular Biotechnology. 48: 87-95. PMID 20927658 DOI: 10.1007/S12033-010-9336-8  0.374
2011 Sasikala P, Harsha CH, Bajaj J, Sharma R, Pandey A, Krishna S. Quantitative Proteomic Profiling Unravels Dynamic Changes in the Myeloma Cell Proteome Treated with Valproic Acid (VPA) Blood. 118: 1847-1847. DOI: 10.1182/Blood.V118.21.1847.1847  0.375
2011 Kelkar DS, Kumar D, Kumar P, Balakrishnan L, Muthusamy B, Yadav AK, Shrivastava P, Marimuthu A, Anand S, Sundaram H, Kingsbury R, Harsha HC, Nair B, Prasad TSK, Chauhan DS, ... ... Pandey A, et al. Proteogenomic Analysis ofMycobacterium tuberculosisBy High Resolution Mass Spectrometry Molecular & Cellular Proteomics. 10: M111.011627. DOI: 10.1074/Mcp.M111.011627  0.334
2010 Kashyap MK, Marimuthu A, Peri S, Kumar GS, Jacob HK, Prasad TS, Mahmood R, Kumar KV, Kumar MV, Meltzer SJ, Montgomery EA, Kumar RV, Pandey A. Overexpression of periostin and lumican in esophageal squamous cell carcinoma. Cancers. 2: 133-42. PMID 24281036 DOI: 10.3390/Cancers2010133  0.661
2010 Chen H, Pimienta G, Gu Y, Sun X, Hu J, Kim MS, Chaerkady R, Gucek M, Cole RN, Sukumar S, Pandey A. Proteomic characterization of Her2/neu-overexpressing breast cancer cells. Proteomics. 10: 3800-10. PMID 20960451 DOI: 10.1002/Pmic.201000297  0.386
2010 Harsha HC, Pandey A. Phosphoproteomics in cancer. Molecular Oncology. 4: 482-95. PMID 20937571 DOI: 10.1016/J.Molonc.2010.09.004  0.428
2010 Hector A, Montgomery EA, Karikari C, Canto M, Dunbar KB, Wang JS, Feldmann G, Hong SM, Haffner MC, Meeker AK, Holland SJ, Yu J, Heckrodt TJ, Zhang J, Ding P, ... ... Pandey A, et al. The Axl receptor tyrosine kinase is an adverse prognostic factor and a therapeutic target in esophageal adenocarcinoma. Cancer Biology & Therapy. 10: 1009-18. PMID 20818175 DOI: 10.4161/Cbt.10.10.13248  0.365
2010 Zhong J, Krawczyk SA, Chaerkady R, Huang H, Goel R, Bader JS, Wong GW, Corkey BE, Pandey A. Temporal profiling of the secretome during adipogenesis in humans. Journal of Proteome Research. 9: 5228-38. PMID 20707391 DOI: 10.1021/Pr100521C  0.399
2010 Kashyap MK, Harsha HC, Renuse S, Pawar H, Sahasrabuddhe NA, Kim MS, Marimuthu A, Keerthikumar S, Muthusamy B, Kandasamy K, Subbannayya Y, Prasad TS, Mahmood R, Chaerkady R, Meltzer SJ, ... Pandey A, et al. SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome. Cancer Biology & Therapy. 10: 796-810. PMID 20686364 DOI: 10.4161/Cbt.10.8.12914  0.696
2010 Chaerkady R, Kerr CL, Kandasamy K, Marimuthu A, Gearhart JD, Pandey A. Comparative proteomics of human embryonic stem cells and embryonal carcinoma cells. Proteomics. 10: 1359-73. PMID 20104618 DOI: 10.1002/Pmic.200900483  0.408
2010 Kandasamy K, Mohan SS, Raju R, Keerthikumar S, Kumar GS, Venugopal AK, Telikicherla D, Navarro JD, Mathivanan S, Pecquet C, Gollapudi SK, Tattikota SG, Mohan S, Padhukasahasram H, Subbannayya Y, ... ... Pandey A, et al. NetPath: a public resource of curated signal transduction pathways. Genome Biology. 11: R3. PMID 20067622 DOI: 10.1186/Gb-2010-11-1-R3  0.751
2010 Zhou Q, Chaerkady R, Shaw PG, Kensler TW, Pandey A, Davidson NE. Screening for therapeutic targets of vorinostat by SILAC-based proteomic analysis in human breast cancer cells. Proteomics. 10: 1029-39. PMID 20049865 DOI: 10.1002/Pmic.200900602  0.385
2010 Prasad TS, Kandasamy K, Pandey A. Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology. Methods in Molecular Biology (Clifton, N.J.). 577: 67-79. PMID 19718509 DOI: 10.1007/978-1-60761-232-2_6  0.339
2010 Kim M, Kuppireddy SV, Zhong J, Jacob HK, Marimuthu A, Kashyap MK, Pandey A. Abstract A58: Activation of diverse signaling pathways in pancreatic cancer revealed by phosphoproteomics Cancer Prevention Research. 3. DOI: 10.1158/1940-6207.Prev-10-A58  0.681
2010 Agyeman A, Chaerkady R, Shaw P, Jacob HKC, Visvanathan K, Pandey A, Davidson N, Kensler T. Abstract A47: Establishing candidate biomarkers for the pharmacodynamic action of sulforaphane in the breast Cancer Prevention Research. 3. DOI: 10.1158/1940-6207.Prev-10-A47  0.364
2010 Agyeman A, Shaw P, Chaerkady R, Tran Q, Sutter T, Pandey A, Visvanathan K, Davidson N, Kensler T. Abstract 5700: Establishing candidate biomarkers for the pharmacodynamic action of sulforaphane in the breast Cancer Research. 70: 5700-5700. DOI: 10.1158/1538-7445.Am10-5700  0.407
2010 Shaw PG, Chearkady R, Pandey A, Davidson N. Abstract 3648: Proteomic profiling of vorinostat in breast cancer Cancer Research. 70: 3648-3648. DOI: 10.1158/1538-7445.Am10-3648  0.358
2010 Prasad TSK, Keerthikumar S, Chaerkady R, Kandasamy K, Renuse S, Marimuthu A, Venugopal AK, Thomas JK, Jacob HKC, Goel R, Pawar H, Sahasrabuddhe NA, Krishna V, Nair BG, Gucek M, ... ... Pandey A, et al. Comparative Proteomic Analysis of Candida albicans and Candida glabrata Clinical Proteomics. 6: 163-173. DOI: 10.1007/S12014-010-9057-9  0.336
2009 Parikh K, Diks SH, Tuynman JH, Verhaar A, Löwenberg M, Hommes DW, Joore J, Pandey A, Peppelenbosch MP. Comparison of peptide array substrate phosphorylation of c-Raf and mitogen activated protein kinase kinase kinase 8. Plos One. 4: e6440. PMID 19649278 DOI: 10.1371/Journal.Pone.0006440  0.343
2009 Amanchy R, Zhong J, Hong R, Kim JH, Gucek M, Cole RN, Molina H, Pandey A. Identification of c-Src tyrosine kinase substrates in platelet-derived growth factor receptor signaling. Molecular Oncology. 3: 439-50. PMID 19632164 DOI: 10.1016/J.Molonc.2009.07.001  0.366
2009 Kandasamy K, Keerthikumar S, Raju R, Keshava Prasad TS, Ramachandra YL, Mohan S, Pandey A. PathBuilder--open source software for annotating and developing pathway resources. Bioinformatics (Oxford, England). 25: 2860-2. PMID 19628504 DOI: 10.1093/Bioinformatics/Btp453  0.332
2009 Li X, Molina H, Huang H, Zhang YY, Liu M, Qian SW, Slawson C, Dias WB, Pandey A, Hart GW, Lane MD, Tang QQ. O-linked N-acetylglucosamine modification on CCAAT enhancer-binding protein beta: role during adipocyte differentiation. The Journal of Biological Chemistry. 284: 19248-54. PMID 19478079 DOI: 10.1074/Jbc.M109.005678  0.326
2009 Harsha HC, Kandasamy K, Ranganathan P, Rani S, Ramabadran S, Gollapudi S, Balakrishnan L, Dwivedi SB, Telikicherla D, Selvan LD, Goel R, Mathivanan S, Marimuthu A, Kashyap M, Vizza RF, ... ... Pandey A, et al. A compendium of potential biomarkers of pancreatic cancer. Plos Medicine. 6: e1000046. PMID 19360088 DOI: 10.1371/Journal.Pmed.1000046  0.62
2009 Ranganathan P, Harsha HC, Pandey A. Molecular alterations in exocrine neoplasms of the pancreas. Archives of Pathology & Laboratory Medicine. 133: 405-12. PMID 19260746 DOI: 10.1043/1543-2165-133.3.405  0.324
2009 Pimienta G, Chaerkady R, Pandey A. SILAC for global phosphoproteomic analysis. Methods in Molecular Biology (Clifton, N.J.). 527: 107-16, x. PMID 19241009 DOI: 10.1007/978-1-60327-834-8_9  0.365
2009 Chaerkady R, Kerr CL, Marimuthu A, Kelkar DS, Kashyap MK, Gucek M, Gearhart JD, Pandey A. Temporal analysis of neural differentiation using quantitative proteomics. Journal of Proteome Research. 8: 1315-26. PMID 19173612 DOI: 10.1021/Pr8006667  0.656
2009 Ghosh AK, Devenport M, Jethwaney D, Kalume DE, Pandey A, Anderson VE, Sultan AA, Kumar N, Jacobs-Lorena M. Malaria parasite invasion of the mosquito salivary gland requires interaction between the Plasmodium TRAP and the Anopheles saglin proteins Plos Pathogens. 5. PMID 19148273 DOI: 10.1371/Journal.Ppat.1000265  0.313
2009 Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A, Balakrishnan L, Marimuthu A, Banerjee S, Somanathan DS, Sebastian A, ... ... Pandey A, et al. Human Protein Reference Database--2009 update. Nucleic Acids Research. 37: D767-72. PMID 18988627 DOI: 10.1093/Nar/Gkn892  0.685
2009 Kashyap MK, Marimuthu A, Kishore CJ, Peri S, Keerthikumar S, Prasad TS, Mahmood R, Rao S, Ranganathan P, Sanjeeviah RC, Vijayakumar M, Kumar KV, Montgomery EA, Kumar RV, Pandey A. Genomewide mRNA profiling of esophageal squamous cell carcinoma for identification of cancer biomarkers. Cancer Biology & Therapy. 8: 36-46. PMID 18981721 DOI: 10.4161/Cbt.8.1.7090  0.673
2009 Kandasamy K, Keerthikumar S, Goel R, Mathivanan S, Patankar N, Shafreen B, Renuse S, Pawar H, Ramachandra YL, Acharya PK, Ranganathan P, Chaerkady R, Keshava Prasad TS, Pandey A. Human Proteinpedia: a unified discovery resource for proteomics research. Nucleic Acids Research. 37: D773-81. PMID 18948298 DOI: 10.1093/Nar/Gkn701  0.38
2009 Molina H, Yang Y, Ruch T, Kim JW, Mortensen P, Otto T, Nalli A, Tang QQ, Lane MD, Chaerkady R, Pandey A. Temporal profiling of the adipocyte proteome during differentiation using a five-plex SILAC based strategy. Journal of Proteome Research. 8: 48-58. PMID 18947249 DOI: 10.1021/Pr800650R  0.391
2009 Keerthikumar S, Raju R, Kandasamy K, Hijikata A, Ramabadran S, Balakrishnan L, Ahmed M, Rani S, Selvan LD, Somanathan DS, Ray S, Bhattacharjee M, Gollapudi S, Ramachandra YL, Bhadra S, ... ... Pandey A, et al. RAPID: Resource of Asian Primary Immunodeficiency Diseases. Nucleic Acids Research. 37: D863-7. PMID 18842635 DOI: 10.1093/Nar/Gkn682  0.331
2008 Chaerkady R, Thuluvath PJ, Kim MS, Nalli A, Vivekanandan P, Simmers J, Torbenson M, Pandey A. O Labeling for a Quantitative Proteomic Analysis of Glycoproteins in Hepatocellular Carcinoma. Clinical Proteomics. 4: 137-155. PMID 20357908 DOI: 10.1007/S12014-008-9013-0  0.393
2008 Song D, Chaerkady R, Tan AC, García-García E, Nalli A, Suárez-Gauthier A, López-Ríos F, Zhang XF, Solomon A, Tong J, Read M, Fritz C, Jimeno A, Pandey A, Hidalgo M. Antitumor activity and molecular effects of the novel heat shock protein 90 inhibitor, IPI-504, in pancreatic cancer. Molecular Cancer Therapeutics. 7: 3275-84. PMID 18852131 DOI: 10.1158/1535-7163.Mct-08-0508  0.395
2008 Kristiansen TZ, Harsha HC, Grønborg M, Maitra A, Pandey A. Differential membrane proteomics using 18O-labeling to identify biomarkers for cholangiocarcinoma. Journal of Proteome Research. 7: 4670-7. PMID 18839982 DOI: 10.1021/Pr800215N  0.399
2008 Harsha HC, Jimeno A, Molina H, Mlhalas AB, Goggins MG, Hruban RH, Schulick RD, Kamath U, Maitra A, Hidalgo M, Pandey A. Activated epidermal growth factor receptor as a novel target in pancreatic cancer therapy Journal of Proteome Research. 7: 4651-4658. PMID 18821783 DOI: 10.1021/Pr800139R  0.361
2008 Guha U, Chaerkady R, Marimuthu A, Patterson AS, Kashyap MK, Harsha HC, Sato M, Bader JS, Lash AE, Minna JD, Pandey A, Varmus HE. Comparisons of tyrosine phosphorylated proteins in cells expressing lung cancer-specific alleles of EGFR and KRAS. Proceedings of the National Academy of Sciences of the United States of America. 105: 14112-7. PMID 18776048 DOI: 10.1073/Pnas.0806158105  0.677
2008 Zhong L, Roybal J, Chaerkady R, Zhang W, Choi K, Alvarez CA, Tran H, Creighton CJ, Yan S, Strieter RM, Pandey A, Kurie JM. Identification of secreted proteins that mediate cell-cell interactions in an in vitro model of the lung cancer microenvironment Cancer Research. 68: 7237-7245. PMID 18757440 DOI: 10.1158/0008-5472.Can-08-1529  0.32
2008 Chaerkady R, Harsha HC, Nalli A, Gucek M, Vivekanandan P, Akhtar J, Cole RN, Simmers J, Schulick RD, Singh S, Torbenson M, Pandey A, Thuluvath PJ. A quantitative proteomic approach for identification of potential biomarkers in hepatocellular carcinoma. Journal of Proteome Research. 7: 4289-98. PMID 18715028 DOI: 10.1021/Pr800197Z  0.351
2008 Amanchy R, Zhong J, Molina H, Chaerkady R, Iwahori A, Kalume DE, Grønborg M, Joore J, Cope L, Pandey A. Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays. Journal of Proteome Research. 7: 3900-10. PMID 18698806 DOI: 10.1021/Pr800198W  0.367
2008 Sarker R, Grønborg M, Cha B, Mohan S, Chen Y, Pandey A, Litchfield D, Donowitz M, Li X. Casein kinase 2 binds to the C terminus of Na+/H+ exchanger 3 (NHE3) and stimulates NHE3 basal activity by phosphorylating a separate site in NHE3. Molecular Biology of the Cell. 19: 3859-70. PMID 18614797 DOI: 10.1091/Mbc.E08-01-0019  0.323
2008 Mathivanan S, Pandey A. Human Proteinpedia as a resource for clinical proteomics. Molecular & Cellular Proteomics : McP. 7: 2038-47. PMID 18573810 DOI: 10.1074/Mcp.R800008-Mcp200  0.335
2008 Luo W, Slebos RJ, Hill S, Li M, Brábek J, Amanchy R, Chaerkady R, Pandey A, Ham AJ, Hanks SK. Global impact of oncogenic Src on a phosphotyrosine proteome. Journal of Proteome Research. 7: 3447-60. PMID 18563927 DOI: 10.1021/Pr800187N  0.43
2008 Harsha HC, Molina H, Pandey A. Quantitative proteomics using stable isotope labeling with amino acids in cell culture Nature Protocols. 3: 505-516. PMID 18323819 DOI: 10.1038/Nprot.2008.2  0.332
2008 Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, ... ... Pandey A, et al. Human Proteinpedia enables sharing of human protein data. Nature Biotechnology. 26: 164-7. PMID 18259167 DOI: 10.1038/Nbt0208-164  0.416
2008 Karanjawala ZE, Illei PB, Ashfaq R, Infante JR, Murphy K, Pandey A, Schulick R, Winter J, Sharma R, Maitra A, Goggins M, Hruban RH. New markers of pancreatic cancer identified through differential gene expression analyses: claudin 18 and annexin A8. The American Journal of Surgical Pathology. 32: 188-96. PMID 18223320 DOI: 10.1097/Pas.0B013E31815701F3  0.301
2008 Chaerkady R, Pandey A. Applications of proteomics to lab diagnosis. Annual Review of Pathology. 3: 485-98. PMID 18039142 DOI: 10.1146/Annurev.Pathmechdis.3.121806.151419  0.336
2008 Zhou Q, Chaerkady R, Shaw P, Kensler T, Pandey A, Davidson N. Abstract B104: Targeting Nrf2/ARE pathway by inhibition of HDAC in breast cancer prevention Cancer Prevention Research. 1. DOI: 10.1158/1940-6207.Prev-08-B104  0.378
2007 Chaerkady R, Pandey A. Quantitative proteomics for identification of cancer biomarkers. Proteomics. Clinical Applications. 1: 1080-9. PMID 21136759 DOI: 10.1002/Prca.200700284  0.36
2007 Zhong J, Molina H, Pandey A. Phosphoproteomics Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. PMID 18429323 DOI: 10.1002/0471140864.Ps2404S50  0.393
2007 Okulate MA, Kalume DE, Reddy R, Kristiansen T, Bhattacharyya M, Chaerkady R, Pandey A, Kumar N. Identification and molecular characterization of a novel protein Saglin as a target of monoclonal antibodies affecting salivary gland infectivity of Plasmodium sporozoites Insect Molecular Biology. 16: 711-722. PMID 18093000 DOI: 10.1111/J.1365-2583.2007.00765.X  0.375
2007 Lucito R, Suresh S, Walter K, Pandey A, Lakshmi B, Krasnitz A, Sebat J, Wigler M, Klein AP, Brune K, Palmisano E, Maitra A, Goggins M, Hruban RH. Copy-number variants in patients with a strong family history of pancreatic cancer. Cancer Biology & Therapy. 6: 1592-9. PMID 17912030 DOI: 10.4161/Cbt.6.10.4725  0.305
2007 Bhandari R, Saiardi A, Ahmadibeni Y, Snowman AM, Resnick AC, Kristiansen TZ, Molina H, Pandey A, Werner JK, Juluri KR, Xu Y, Prestwich GD, Parang K, Snyder SH. Protein pyrophosphorylation by inositol pyrophosphates is a posttranslational event. Proceedings of the National Academy of Sciences of the United States of America. 104: 15305-10. PMID 17873058 DOI: 10.1073/Pnas.0707338104  0.367
2007 Wang Z, Pandey A, Hart GW. Dynamic interplay between O-linked N-acetylglucosaminylation and glycogen synthase kinase-3-dependent phosphorylation. Molecular & Cellular Proteomics : McP. 6: 1365-79. PMID 17507370 DOI: 10.1074/Mcp.M600453-Mcp200  0.305
2007 Amanchy R, Periaswamy B, Mathivanan S, Reddy R, Tattikota SG, Pandey A. A curated compendium of phosphorylation motifs. Nature Biotechnology. 25: 285-6. PMID 17344875 DOI: 10.1038/Nbt0307-285  0.751
2007 Molina H, Horn DM, Tang N, Mathivanan S, Pandey A. Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 104: 2199-204. PMID 17287340 DOI: 10.1073/Pnas.0611217104  0.34
2006 Mathivanan S, Periaswamy B, Gandhi TK, Kandasamy K, Suresh S, Mohmood R, Ramachandra YL, Pandey A. An evaluation of human protein-protein interaction data in the public domain. Bmc Bioinformatics. 7: S19. PMID 17254303 DOI: 10.1186/1471-2105-7-S5-S19  0.366
2006 Bose R, Molina H, Patterson AS, Bitok JK, Periaswamy B, Bader JS, Pandey A, Cole PA. Phosphoproteomic analysis of Her2/neu signaling and inhibition. Proceedings of the National Academy of Sciences of the United States of America. 103: 9773-8. PMID 16785428 DOI: 10.1073/Pnas.0603948103  0.436
2006 Qiao Y, Molina H, Pandey A, Zhang J, Cole PA. Chemical rescue of a mutant enzyme in living cells. Science (New York, N.Y.). 311: 1293-7. PMID 16513984 DOI: 10.1126/Science.1122224  0.381
2006 Gandhi TK, Zhong J, Mathivanan S, Karthick L, Chandrika KN, Mohan SS, Sharma S, Pinkert S, Nagaraju S, Periaswamy B, Mishra G, Nandakumar K, Shen B, Deshpande N, Nayak R, ... ... Pandey A, et al. Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets. Nature Genetics. 38: 285-93. PMID 16501559 DOI: 10.1038/Ng1747  0.321
2006 Mishra GR, Suresh M, Kumaran K, Kannabiran N, Suresh S, Bala P, Shivakumar K, Anuradha N, Reddy R, Raghavan TM, Menon S, Hanumanthu G, Gupta M, Upendran S, Gupta S, ... ... Pandey A, et al. Human protein reference database--2006 update. Nucleic Acids Research. 34: D411-4. PMID 16381900 DOI: 10.1093/Nar/Gkj141  0.377
2006 Amanchy R, Kalume DE, Iwahori A, Zhong J, Pandey A. Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC). Journal of Proteome Research. 4: 1661-71. PMID 16212419 DOI: 10.1021/Pr050134H  0.446
2005 Gandhi TK, Chandran S, Peri S, Saravana R, Amanchy R, Prasad TS, Pandey A. A bioinformatics analysis of protein tyrosine phosphatases in humans. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 12: 79-89. PMID 16303740 DOI: 10.1093/Dnares/12.2.79  0.429
2005 Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A. Genome annotation of Anopheles gambiae using mass spectrometry-derived data. Bmc Genomics. 6: 128. PMID 16171517 DOI: 10.1186/1471-2164-6-128  0.371
2005 Kalume DE, Okulate M, Zhong J, Reddy R, Suresh S, Deshpande N, Kumar N, Pandey A. A proteomic analysis of salivary glands of female Anopheles gambiae mosquito. Proteomics. 5: 3765-77. PMID 16127729 DOI: 10.1002/Pmic.200401210  0.327
2005 Ping P, Vondriska TM, Creighton CJ, Gandhi TK, Yang Z, Menon R, Kwon MS, Cho SY, Drwal G, Kellmann M, Peri S, Suresh S, Gronborg M, Molina H, Chaerkady R, ... ... Pandey A, et al. A functional annotation of subproteomes in human plasma. Proteomics. 5: 3506-19. PMID 16104058 DOI: 10.1002/Pmic.200500140  0.353
2005 Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, Kapp EA, Moritz RL, Chan DW, Rai AJ, Admon A, ... ... Pandey A, et al. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics. 5: 3226-45. PMID 16104056 DOI: 10.1002/Pmic.200500358  0.357
2005 Rhodes DR, Tomlins SA, Varambally S, Mahavisno V, Barrette T, Kalyana-Sundaram S, Ghosh D, Pandey A, Chinnaiyan AM. Probabilistic model of the human protein-protein interaction network. Nature Biotechnology. 23: 951-9. PMID 16082366 DOI: 10.1038/Nbt1103  0.373
2005 Muthusamy B, Hanumanthu G, Suresh S, Rekha B, Srinivas D, Karthick L, Vrushabendra BM, Sharma S, Mishra G, Chatterjee P, Mangala KS, Shivashankar HN, Chandrika KN, Deshpande N, Suresh M, ... ... Pandey A, et al. Plasma Proteome Database as a resource for proteomics research. Proteomics. 5: 3531-6. PMID 16041672 DOI: 10.1002/Pmic.200401335  0.367
2005 Tang QQ, Grønborg M, Huang H, Kim JW, Otto TC, Pandey A, Lane MD. Sequential phosphorylation of CCAAT enhancer-binding protein beta by MAPK and glycogen synthase kinase 3beta is required for adipogenesis. Proceedings of the National Academy of Sciences of the United States of America. 102: 9766-71. PMID 15985551 DOI: 10.1073/Pnas.0503891102  0.309
2005 Molina H, Parmigiani G, Pandey A. Assessing reproducibility of a protein dynamics study using in vivo labeling and liquid chromatography tandem mass spectrometry Analytical Chemistry. 77: 2739-2744. PMID 15859588 DOI: 10.1021/Ac048204B  0.324
2005 Molina H, Bunkenborg J, Reddy GH, Muthusamy B, Scheel PJ, Pandey A. A proteomic analysis of human hemodialysis fluid. Molecular & Cellular Proteomics : McP. 4: 637-50. PMID 15723814 DOI: 10.1074/Mcp.M500042-Mcp200  0.378
2005 Amanchy R, Kalume DE, Pandey A. Stable isotope labeling with amino acids in cell culture (SILAC) for studying dynamics of protein abundance and posttranslational modifications. Science's Stke : Signal Transduction Knowledge Environment. 2005: pl2. PMID 15657263 DOI: 10.1126/Stke.2672005Pl2  0.358
2005 Grønborg M, Bunkenborg J, Kristiansen TZ, Jensen ON, Yeo CJ, Hruban RH, Maitra A, Goggins MG, Pandey A. Comprehensive proteomic analysis of human pancreatic juice. Journal of Proteome Research. 3: 1042-55. PMID 15473694 DOI: 10.1021/Pr0499085  0.362
2005 Chen P, Williams A, Molina H, Pandey A, Small D. Possible Role of the Activation Loop Tyrosine Residue (Y842) in FLT3/ITD Signaling May Be Mediated by SHP-2. Blood. 106: 1199-1199. DOI: 10.1182/Blood.V106.11.1199.1199  0.38
2004 Kristiansen TZ, Nielsen MM, Blagoev B, Pandey A, Mann M. Mouse embryonic fibroblasts derived from Odin deficient mice display a hyperproliiferative phenotype. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 11: 285-92. PMID 15500253  0.414
2004 Hustinx SR, Cao D, Maitra A, Sato N, Martin ST, Sudhir D, Iacobuzio-Donahue C, Cameron JL, Yeo CJ, Kern SE, Goggins M, Mollenhauer J, Pandey A, Hruban RH. Differentially expressed genes in pancreatic ductal adenocarcinomas identified through serial analysis of gene expression. Cancer Biology & Therapy. 3: 1254-61. PMID 15477757 DOI: 10.4161/Cbt.3.12.1238  0.346
2004 Cao D, Hustinx SR, Sui G, Bala P, Sato N, Martin S, Maitra A, Murphy KM, Cameron JL, Yeo CJ, Kern SE, Goggins M, Pandey A, Hruban RH. Identification of novel highly expressed genes in pancreatic ductal adenocarcinomas through a bioinformatics analysis of expressed sequence tags. Cancer Biology & Therapy. 3: 1081-9; discussion 1. PMID 15467436 DOI: 10.4161/Cbt.3.11.1175  0.332
2004 Koopmann J, Thuluvath PJ, Zahurak ML, Kristiansen TZ, Pandey A, Schulick R, Argani P, Hidalgo M, Iacobelli S, Goggins M, Maitra A. Mac-2-binding protein is a diagnostic marker for biliary tract carcinoma. Cancer. 101: 1609-15. PMID 15378479 DOI: 10.1002/Cncr.20469  0.317
2004 Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan AM. Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proceedings of the National Academy of Sciences of the United States of America. 101: 9309-14. PMID 15184677 DOI: 10.1073/Pnas.0401994101  0.341
2004 Navarro JD, Talreja N, Peri S, Vrushabendra BM, Rashmi BP, Padma N, Surendranath V, Jonnalagadda CK, Kousthub PS, Deshpande N, Shanker K, Pandey A. BioBuilder as a database development and functional annotation platform for proteins. Bmc Bioinformatics. 5: 43. PMID 15099404 DOI: 10.1186/1471-2105-5-43  0.34
2004 Kristiansen TZ, Bunkenborg J, Gronborg M, Molina H, Thuluvath PJ, Argani P, Goggins MG, Maitra A, Pandey A. A proteomic analysis of human bile. Molecular & Cellular Proteomics : McP. 3: 715-28. PMID 15084671 DOI: 10.1074/Mcp.M400015-Mcp200  0.386
2004 Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan AM. ONCOMINE: a cancer microarray database and integrated data-mining platform. Neoplasia (New York, N.Y.). 6: 1-6. PMID 15068665 DOI: 10.1016/S1476-5586(04)80047-2  0.349
2004 Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, ... ... Pandey A, et al. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nature Biotechnology. 22: 177-83. PMID 14755292 DOI: 10.1038/Nbt926  0.338
2004 Ibarrola N, Molina H, Iwahori A, Pandey A. A Novel Proteomic Approach for Specific Identification of Tyrosine Kinase Substrates Using [13C]Tyrosine Journal of Biological Chemistry. 279: 15805-15813. PMID 14739304 DOI: 10.1074/Jbc.M311714200  0.405
2004 Ibarrola N, Kratchmarova I, Nakajima D, Schiemann WP, Moustakas A, Pandey A, Mann M. Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor beta signaling. Bmc Cell Biology. 5: 2. PMID 14728725 DOI: 10.1186/1471-2121-5-2  0.438
2004 Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, ... ... Pandey A, et al. Human protein reference database as a discovery resource for proteomics. Nucleic Acids Research. 32: D497-501. PMID 14681466 DOI: 10.1093/Nar/Gkh070  0.36
2004 Ibarrola N, Kalume DE, Gronborg M, Iwahori A, Pandey A. A proteomic approach for quantitation of phosphorylation using stable isotope labeling in cell culture. Analytical Chemistry. 75: 6043-9. PMID 14615979 DOI: 10.1021/Ac034931F  0.395
2004 Raghothama C, Pandey A. Absolute systems biology--measuring dynamics of protein modifications. Trends in Biotechnology. 21: 467-70. PMID 14573357 DOI: 10.1016/J.Tibtech.2003.09.009  0.339
2004 Daniel Navarro J, Pandey A. Unraveling the human interactome: lessons from the yeast Drug Discovery Today: Targets. 3: 79-84. DOI: 10.1016/S1741-8372(04)02413-2  0.34
2003 Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, ... ... Pandey A, et al. Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Research. 13: 2363-71. PMID 14525934 DOI: 10.1101/Gr.1680803  0.359
2003 Steen H, Fernandez M, Ghaffari S, Pandey A, Mann M. Phosphotyrosine mapping in Bcr/Abl oncoprotein using phosphotyrosine-specific immonium ion scanning. Molecular & Cellular Proteomics : McP. 2: 138-45. PMID 12644574 DOI: 10.1074/Mcp.M300001-Mcp200  0.432
2003 Kalume DE, Molina H, Pandey A. Tackling the phosphoproteome: Tools and strategies Current Opinion in Chemical Biology. 7: 64-69. PMID 12547428 DOI: 10.1016/S1367-5931(02)00009-1  0.361
2003 Pandey A, Peri S, Thacker C, Whipple CA, Collins JJ, Mann M. Computational and experimental analysis reveals a novel Src family kinase in the C. elegans genome. Bioinformatics (Oxford, England). 19: 169-72. PMID 12538235 DOI: 10.1093/Bioinformatics/19.2.169  0.462
2003 Steen H, Pandey A. Proteomics goes quantitative: measuring protein abundance. Trends in Biotechnology. 20: 361-4. PMID 12175758 DOI: 10.1016/S0167-7799(02)02009-7  0.367
2002 Andersen JS, Rappsilber J, Steen H, Pandey A, Molina H, Lund M, Podtelejnikov A, Lamond AI, Mann M. Multi-Protein Complexes Studied by Mass Spectrometry. Thescientificworldjournal. 2: 91-92. PMID 29973817 DOI: 10.1100/Tsw.2002.43  0.507
2002 Pandey A, Blagoev B, Kratchmarova I, Fernandez M, Nielsen M, Kristiansen TZ, Ohara O, Podtelejnikov AV, Roche S, Lodish HF, Mann M. Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases. Oncogene. 21: 8029-36. PMID 12439753 DOI: 10.1038/Sj.Onc.1205988  0.603
2002 Steen H, Pandey A, Andersen JS, Mann M. Analysis of tyrosine phosphorylation sites in signaling molecules by a phosphotyrosine-specific immonium ion scanning method. Science's Stke : Signal Transduction Knowledge Environment. 2002: pl16. PMID 12381836 DOI: 10.1126/Stke.2002.154.Pl16  0.523
2002 Grønborg M, Kristiansen TZ, Stensballe A, Andersen JS, Ohara O, Mann M, Jensen ON, Pandey A. A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: identification of a novel protein, Frigg, as a protein kinase A substrate. Molecular & Cellular Proteomics : McP. 1: 517-27. PMID 12239280 DOI: 10.1074/Mcp.M200010-Mcp200  0.533
2002 Jebanathirajah JA, Peri S, Pandey A. Toll and interleukin-1 receptor (TIR) domain-containing proteins in plants: a genomic perspective. Trends in Plant Science. 7: 388-91. PMID 12234729 DOI: 10.1016/S1360-1385(02)02309-9  0.341
2002 Blagoev B, Kratchmarova I, Nielsen MM, Fernandez MM, Voldby J, Andersen JS, Kristiansen K, Pandey A, Mann M. Inhibition of adipocyte differentiation by resistin-like molecule alpha. Biochemical characterization of its oligomeric nature. The Journal of Biological Chemistry. 277: 42011-6. PMID 12189153 DOI: 10.1074/Jbc.M206975200  0.431
2002 Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Molecular & Cellular Proteomics : McP. 1: 376-86. PMID 12118079 DOI: 10.1074/Mcp.M200025-Mcp200  0.488
2002 Kratchmarova I, Kalume DE, Blagoev B, Scherer PE, Podtelejnikov AV, Molina H, Bickel PE, Andersen JS, Fernandez MM, Bunkenborg J, Roepstorff P, Kristiansen K, Lodish HF, Mann M, Pandey A. A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes. Molecular & Cellular Proteomics : McP. 1: 213-22. PMID 12096121 DOI: 10.1074/Mcp.M200006-Mcp200  0.611
2002 Dan I, Watanabe NM, Kajikawa E, Ishida T, Pandey A, Kusumi A. Overlapping of MINK and CHRNE gene loci in the course of mammalian evolution. Nucleic Acids Research. 30: 2906-10. PMID 12087176 DOI: 10.1093/Nar/Gkf407  0.314
2002 Pandey A, Dan I, Kristiansen TZ, Watanabe NM, Voldby J, Kajikawa E, Khosravi-Far R, Blagoev B, Mann M. Cloning and characterization of PAK5, a novel member of mammalian p21-activated kinase-II subfamily that is predominantly expressed in brain. Oncogene. 21: 3939-48. PMID 12032833 DOI: 10.1038/Sj.Onc.1205478  0.494
2002 Schiemann WP, Blobe GC, Kalume DE, Pandey A, Lodish HF. Context-specific effects of fibulin-5 (DANCE/EVEC) on cell proliferation, motility, and invasion. Fibulin-5 is induced by transforming growth factor-beta and affects protein kinase cascades. The Journal of Biological Chemistry. 277: 27367-77. PMID 12021267 DOI: 10.1074/Jbc.M200148200  0.507
2002 Mann M, Ong SE, Grønborg M, Steen H, Jensen ON, Pandey A. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. Trends in Biotechnology. 20: 261-8. PMID 12007495 DOI: 10.1016/S0167-7799(02)01944-3  0.503
2002 Pandey A, Ibarrola N, Kratchmarova I, Fernandez MM, Constantinescu SN, Ohara O, Sawasdikosol S, Lodish HF, Mann M. A novel Src homology 2 domain-containing molecule, Src-like adapter protein-2 (SLAP-2), which negatively regulates T cell receptor signaling. The Journal of Biological Chemistry. 277: 19131-8. PMID 11891219 DOI: 10.1074/Jbc.M110318200  0.607
2002 Dan I, Ong SE, Watanabe NM, Blagoev B, Nielsen MM, Kajikawa E, Kristiansen TZ, Mann M, Pandey A. Cloning of MASK, a novel member of the mammalian germinal center kinase III subfamily, with apoptosis-inducing properties. The Journal of Biological Chemistry. 277: 5929-39. PMID 11741893 DOI: 10.1074/Jbc.M110882200  0.484
2002 Steen H, Kuster B, Fernandez M, Pandey A, Mann M. Tyrosine phosphorylation mapping of the epidermal growth factor receptor signaling pathway. The Journal of Biological Chemistry. 277: 1031-9. PMID 11687594 DOI: 10.1074/Jbc.M109992200  0.529
2002 Anand SK, Pandey A. Screening large proteins for interaction partners Trends in Biochemical Sciences. 27: 603. DOI: 10.1016/S0968-0004(02)02241-7  0.355
2002 Shankar SH, Pandey A. A novel mode of activating the JAK–STAT signaling pathway Trends in Biochemical Sciences. 27: 336. DOI: 10.1016/S0968-0004(02)02150-3  0.398
2002 Ong S, Pandey A. JAK2 – not just another kinase Trends in Biochemical Sciences. 27: 118. DOI: 10.1016/S0968-0004(02)02071-6  0.376
2002 Peri S, Ibarrola N, Blagoev B, Mann M, Pandey A. Corrigendum: Author correction Trends in Genetics. 18: 218. DOI: 10.1016/S0168-9525(02)02662-8  0.454
2002 Deshpande N, Pandey A. Mining gene expression data for functional annotation of genomes Trends in Biotechnology. 20: 282. DOI: 10.1016/S0167-7799(02)01994-7  0.346
2001 Peri S, Ibarrola N, Blagoev B, Mann M, Pandey A. Common pitfalls in bioinformatics-based analyses: look before you leap. Trends in Genetics : Tig. 17: 541-5. PMID 12078716 DOI: 10.1016/S0168-9525(01)02443-X  0.413
2001 Ong SE, Pandey A. An evaluation of the use of two-dimensional gel electrophoresis in proteomics Biomolecular Engineering. 18: 195-205. PMID 11911086 DOI: 10.1016/S1389-0344(01)00095-8  0.317
2001 Peri S, Steen H, Pandey A. GPMAW--a software tool for analyzing proteins and peptides. Trends in Biochemical Sciences. 26: 687-9. PMID 11701329 DOI: 10.1016/S0968-0004(01)01954-5  0.325
2001 Blagoev B, Pandey A. Microarrays go live--new prospects for proteomics. Trends in Biochemical Sciences. 26: 639-641. PMID 11701308 DOI: 10.1016/S0968-0004(01)01977-6  0.366
2001 Mann M, Hendrickson RC, Pandey A. Analysis of proteins and proteomes by mass spectrometry. Annual Review of Biochemistry. 70: 437-73. PMID 11395414 DOI: 10.1146/Annurev.Biochem.70.1.437  0.502
2001 Steen H, Küster B, Fernandez M, Pandey A, Mann M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode. Analytical Chemistry. 73: 1440-8. PMID 11321292 DOI: 10.1021/Ac001318C  0.463
2001 Kratchmarova I, Sosinowski T, Weiss A, Witter K, Vincenz C, Pandey A. Characterization of promoter region and genomic structure of the murine and human genes encoding Src like adapter protein. Gene. 262: 267-73. PMID 11179692 DOI: 10.1016/S0378-1119(00)00516-3  0.39
2001 Mann M, Pandey A. Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases. Trends in Biochemical Sciences. 26: 54-61. PMID 11165518 DOI: 10.1016/S0968-0004(00)01726-6  0.489
2000 Pandey A, Andersen JS, Mann M. Use of mass spectrometry to study signaling pathways. Science's Stke : Signal Transduction Knowledge Environment. 2000: pl1. PMID 11752594 DOI: 10.1126/Stke.2000.37.Pl1  0.53
2000 Pandey A, Fernandez MM, Steen H, Blagoev B, Nielsen MM, Roche S, Mann M, Lodish HF. Identification of a novel immunoreceptor tyrosine-based activation motif-containing molecule, STAM2, by mass spectrometry and its involvement in growth factor and cytokine receptor signaling pathways. The Journal of Biological Chemistry. 275: 38633-9. PMID 10993906 DOI: 10.1074/Jbc.M007849200  0.585
2000 Pandey A, Ozaki K, Baumann H, Levin SD, Puel A, Farr AG, Ziegler SF, Leonard WJ, Lodish HF. Cloning of a receptor subunit required for signaling by thymic stromal lymphopoietin. Nature Immunology. 1: 59-64. PMID 10881176 DOI: 10.1038/76923  0.437
2000 Pandey A, Mann M. Proteomics to study genes and genomes. Nature. 405: 837-46. PMID 10866210 DOI: 10.1038/35015709  0.512
2000 Sosinowski T, Pandey A, Dixit VM, Weiss A. Src-like adaptor protein (SLAP) is a negative regulator of T cell receptor signaling. The Journal of Experimental Medicine. 191: 463-74. PMID 10662792 DOI: 10.1084/Jem.191.3.463  0.554
2000 Pandey A, Podtelejnikov AV, Blagoev B, Bustelo XR, Mann M, Lodish HF. Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors. Proceedings of the National Academy of Sciences of the United States of America. 97: 179-84. PMID 10618391 DOI: 10.1073/Pnas.97.1.179  0.603
1999 Pandey A, Lewitter F. Nucleotide sequence databases: A gold mine for biologists Trends in Biochemical Sciences. 24: 276-280. PMID 10390617 DOI: 10.1016/S0968-0004(99)01400-0  0.304
1998 Roche S, Alonso G, Kazlauskas A, Dixit VM, Courtneidge SA, Pandey A. Src-like adaptor protein (Slap) is a negative regulator of mitogenesis. Current Biology : Cb. 8: 975-8. PMID 9742401 DOI: 10.1016/S0960-9822(98)70400-2  0.576
1996 Pandey A, Liu X, Dixon JE, Di Fiore PP, Dixit VM. Direct association between the Ret receptor tyrosine kinase and the Src homology 2-containing adapter protein Grb7. The Journal of Biological Chemistry. 271: 10607-10. PMID 8631863 DOI: 10.1074/Jbc.271.18.10607  0.565
1996 Liu X, Vega QC, Decker RA, Pandey A, Worby CA, Dixon JE. Oncogenic RET receptors display different autophosphorylation sites and substrate binding specificities. The Journal of Biological Chemistry. 271: 5309-12. PMID 8621380 DOI: 10.1074/Jbc.271.10.5309  0.322
1995 Angrist M, Wells DE, Chakravarti A, Pandey A. Chromosomal localization of the mouse Src-like adapter protein (Slap) gene and its putative human homolog SLA. Genomics. 30: 623-5. PMID 8825655 DOI: 10.1006/Geno.1995.1289  0.39
1995 Pandey A, Lindberg RA, Dixit VM. Cell signalling. Receptor orphans find a family. Current Biology : Cb. 5: 986-9. PMID 8542290 DOI: 10.1016/S0960-9822(95)00195-3  0.513
1995 Shao H, Pandey A, O'Shea KS, Seldin M, Dixit VM. Characterization of B61, the ligand for the Eck receptor protein-tyrosine kinase. The Journal of Biological Chemistry. 270: 5636-41. PMID 7890684 DOI: 10.1074/Jbc.270.10.5636  0.54
1995 Shao H, Lou L, Pandey A, Verderame MF, Siever DA, Dixit VM. cDNA cloning and characterization of a Cek7 receptor protein-tyrosine kinase ligand that is identical to the ligand (ELF-1) for the Mek-4 and Sek receptor protein-tyrosine kinases. The Journal of Biological Chemistry. 270: 3467-70. PMID 7876076 DOI: 10.1074/Jbc.270.8.3467  0.536
1995 Pandey A, Duan H, Di Fiore PP, Dixit VM. The Ret receptor protein tyrosine kinase associates with the SH2-containing adapter protein Grb10. The Journal of Biological Chemistry. 270: 21461-3. PMID 7665556 DOI: 10.1074/Jbc.270.37.21461  0.569
1995 Pandey A, Duan H, Dixit VM. Characterization of a novel Src-like adapter protein that associates with the Eck receptor tyrosine kinase. The Journal of Biological Chemistry. 270: 19201-4. PMID 7543898 DOI: 10.1074/Jbc.270.33.19201  0.563
1995 Pandey A, Shao H, Marks RM, Polverini PJ, Dixit VM. Role of B61, the ligand for the Eck receptor tyrosine kinase, in TNF-alpha-induced angiogenesis. Science (New York, N.Y.). 268: 567-9. PMID 7536959 DOI: 10.1126/Science.7536959  0.493
1994 Pandey A, Lazar DF, Saltiel AR, Dixit VM. Activation of the Eck receptor protein tyrosine kinase stimulates phosphatidylinositol 3-kinase activity. The Journal of Biological Chemistry. 269: 30154-7. PMID 7982920  0.514
1994 Shao H, Lou L, Pandey A, Pasquale EB, Dixit VM. cDNA cloning and characterization of a ligand for the Cek5 receptor protein-tyrosine kinase. The Journal of Biological Chemistry. 269: 26606-9. PMID 7929389  0.498
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