Jos Raaijmakers - Publications

Affiliations: 
Microbial Ecology NIOO 

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Costa LSAS, de Faria MR, Chiaramonte JB, Mendes LW, Sepo E, de Hollander M, Fernandes JMC, Carrión VJ, Bettiol W, Mauchline TH, Raaijmakers JM, Mendes R. Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness. Environmental Microbiome. 18: 85. PMID 38053159 DOI: 10.1186/s40793-023-00529-2  0.402
2023 van der Meij A, Elsayed SS, Du C, Willemse J, Wood TM, Martin NI, Raaijmakers JM, van Wezel GP. The plant stress hormone jasmonic acid evokes defensive responses in streptomycetes. Applied and Environmental Microbiology. e0123923. PMID 37902333 DOI: 10.1128/aem.01239-23  0.542
2023 Mendes LW, Raaijmakers JM, de Hollander M, Sepo E, Gómez Expósito R, Chiorato AF, Mendes R, Tsai SM, Carrión VJ. Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome. Environmental Microbiome. 18: 68. PMID 37537681 DOI: 10.1186/s40793-023-00524-7  0.438
2023 Pan X, Raaijmakers JM, Carrión VJ. Importance of Bacteroidetes in host-microbe interactions and ecosystem functioning. Trends in Microbiology. PMID 37173204 DOI: 10.1016/j.tim.2023.03.018  0.496
2022 Abera S, Shimels M, Tessema T, Raaijmakers JM, Dini-Andreote F. Back to the roots: defining the core microbiome of Sorghum bicolor in agricultural field soils from the centre of origin. Fems Microbiology Ecology. 98. PMID 36423338 DOI: 10.1093/femsec/fiac136  0.317
2022 Raaijmakers JM, Kiers ET. Rewilding plant microbiomes. Science (New York, N.Y.). 378: 599-600. PMID 36356130 DOI: 10.1126/science.abn6350  0.373
2022 Gouka L, Vogels C, Hansen LH, Raaijmakers JM, Cordovez V. Genetic, Phenotypic and Metabolic Diversity of Yeasts From Wheat Flag Leaves. Frontiers in Plant Science. 13: 908628. PMID 35873980 DOI: 10.3389/fpls.2022.908628  0.437
2022 Gouka L, Raaijmakers JM, Cordovez V. Ecology and functional potential of phyllosphere yeasts. Trends in Plant Science. PMID 35842340 DOI: 10.1016/j.tplants.2022.06.007  0.458
2022 Jeon JS, Rybka D, Carreno-Quintero N, De Vos R, Raaijmakers JM, Etalo DW. Metabolic signatures of rhizobacteria-induced plant growth promotion. Plant, Cell & Environment. PMID 35751418 DOI: 10.1111/pce.14385  0.504
2022 Oyserman BO, Flores SS, Griffioen T, Pan X, van der Wijk E, Pronk L, Lokhorst W, Nurfikari A, Paulson JN, Movassagh M, Stopnisek N, Kupczok A, Cordovez V, Carrión VJ, Ligterink W, ... ... Raaijmakers JM, et al. Disentangling the genetic basis of rhizosphere microbiome assembly in tomato. Nature Communications. 13: 3228. PMID 35710629 DOI: 10.1038/s41467-022-30849-9  0.552
2022 Lee Díaz AS, Rizaludin MS, Zweers H, Raaijmakers JM, Garbeva P. Exploring the Volatiles Released from Roots of Wild and Domesticated Tomato Plants under Insect Attack. Molecules (Basel, Switzerland). 27. PMID 35268714 DOI: 10.3390/molecules27051612  0.505
2022 Ampt EA, van Ruijven J, Zwart MP, Raaijmakers JM, Termorshuizen AJ, Mommer L. Plant neighbours can make or break the disease transmission chain of a fungal root pathogen. The New Phytologist. 233: 1303-1316. PMID 34787907 DOI: 10.1111/nph.17866  0.411
2021 Jeon JS, Etalo DW, Carreno-Quintero N, de Vos RCH, Raaijmakers JM. Effects of Sulfur Assimilation in SS101 on Growth, Defense, and Metabolome of Different . Biomolecules. 11. PMID 34827700 DOI: 10.3390/biom11111704  0.455
2021 Rizaludin MS, Stopnisek N, Raaijmakers JM, Garbeva P. The Chemistry of Stress: Understanding the 'Cry for Help' of Plant Roots. Metabolites. 11. PMID 34199628 DOI: 10.3390/metabo11060357  0.561
2021 Hawkes CV, Kjøller R, Raaijmakers JM, Riber L, Christensen S, Rasmussen S, Christensen JH, Dahl AB, Westergaard JC, Nielsen M, Brown-Guedira G, Hestbjerg Hansen L. Extension of Plant Phenotypes by the Foliar Microbiome. Annual Review of Plant Biology. 72: 823-846. PMID 34143648 DOI: 10.1146/annurev-arplant-080620-114342  0.589
2021 Tracanna V, Ossowicki A, Petrus MLC, Overduin S, Terlouw BR, Lund G, Robinson SL, Warris S, Schijlen EGWM, van Wezel GP, Raaijmakers JM, Garbeva P, Medema MH. Dissecting Disease-Suppressive Rhizosphere Microbiomes by Functional Amplicon Sequencing and 10× Metagenomics. Msystems. 6: e0111620. PMID 34100635 DOI: 10.1128/mSystems.01116-20  0.325
2021 Song C, Jin K, Raaijmakers JM. Designing a home for beneficial plant microbiomes. Current Opinion in Plant Biology. 62: 102025. PMID 33684884 DOI: 10.1016/j.pbi.2021.102025  0.55
2021 Cordovez V, Rotoni C, Dini-Andreote F, Oyserman B, Carrión VJ, Raaijmakers JM. Successive plant growth amplifies genotype-specific assembly of the tomato rhizosphere microbiome. The Science of the Total Environment. 772: 144825. PMID 33581524 DOI: 10.1016/j.scitotenv.2020.144825  0.537
2021 Jeon JS, Carreno-Quintero N, van Eekelen HDLM, De Vos RCH, Raaijmakers JM, Etalo DW. Impact of root-associated strains of three Paraburkholderia species on primary and secondary metabolism of Brassica oleracea. Scientific Reports. 11: 2781. PMID 33531553 DOI: 10.1038/s41598-021-82238-9  0.446
2021 Moisan K, Raaijmakers JM, Dicke M, Lucas-Barbosa D, Cordovez V. Volatiles from soil-borne fungi affect directional growth of roots. Plant, Cell & Environment. 44: 339-345. PMID 32996612 DOI: 10.1111/pce.13890  0.315
2020 Landazuri CFG, Gomez JS, Raaijmakers JM, Oyserman BO. Restoring degraded microbiome function with self-assembled communities. Fems Microbiology Ecology. PMID 33150935 DOI: 10.1093/femsec/fiaa225  0.328
2020 Masteling R, Voorhoeve L, IJsselmuiden J, Dini-Andreote F, de Boer W, Raaijmakers JM. DiSCount: computer vision for automated quantification of seed germination. Plant Methods. 16: 60. PMID 32377220 DOI: 10.1186/s13007-020-00602-8  0.318
2020 Rossmann M, Pérez-Jaramillo JE, Kavamura VN, Chiaramonte JB, Dumack K, Fiore-Donno AM, Mendes LW, Ferreira MMC, Bonkowski M, Raaijmakers JM, Mauchline TH, Mendes R. Multitrophic interactions in the rhizosphere microbiome of wheat: from bacteria and fungi to protists. Fems Microbiology Ecology. PMID 32124916 DOI: 10.1093/Femsec/Fiaa032  0.423
2019 Carrión VJ, Perez-Jaramillo J, Cordovez V, Tracanna V, de Hollander M, Ruiz-Buck D, Mendes LW, van Ijcken WFJ, Gomez-Exposito R, Elsayed SS, Mohanraju P, Arifah A, van der Oost J, Paulson JN, Mendes R, ... ... Raaijmakers JM, et al. Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome. Science (New York, N.Y.). 366: 606-612. PMID 31672892 DOI: 10.1126/science.aaw9285  0.484
2019 Masteling R, Lombard L, de Boer W, Raaijmakers JM, Dini-Andreote F. Harnessing the microbiome to control plant parasitic weeds. Current Opinion in Microbiology. 49: 26-33. PMID 31654911 DOI: 10.1016/j.mib.2019.09.006  0.539
2019 Mendes LW, de Chaves MG, Fonseca MC, Mendes R, Raaijmakers JM, Tsai SM. Resistance Breeding of Common Bean Shapes the Physiology of the Rhizosphere Microbiome. Frontiers in Microbiology. 10: 2252. PMID 31632370 DOI: 10.3389/fmicb.2019.02252  0.364
2019 Moisan K, Cordovez V, van de Zande EM, Raaijmakers JM, Dicke M, Lucas-Barbosa D. Volatiles of pathogenic and non-pathogenic soil-borne fungi affect plant development and resistance to insects. Oecologia. 190: 589-604. PMID 31201518 DOI: 10.1007/s00442-019-04433-w  0.541
2019 Cordovez V, Dini-Andreote F, Carrión VJ, Raaijmakers JM. Ecology and Evolution of Plant Microbiomes. Annual Review of Microbiology. 73: 69-88. PMID 31091418 DOI: 10.1146/annurev-micro-090817-062524  0.572
2018 Cordovez V, Schop S, Hordijk K, Dupré de Boulois H, Coppens F, Hanssen I, Raaijmakers JM, Carrión VJ. Priming of Plant Growth Promotion by Volatiles of Root-Associated Microbacterium spp. Applied and Environmental Microbiology. 84. PMID 30194105 DOI: 10.1128/AEM.01865-18  0.538
2018 Pérez-Jaramillo JE, Carrión VJ, de Hollander M, Raaijmakers JM. The wild side of plant microbiomes. Microbiome. 6: 143. PMID 30115122 DOI: 10.1186/s40168-018-0519-z  0.517
2018 Mendes LW, Mendes R, Raaijmakers JM, Tsai SM. Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean. The Isme Journal. PMID 30018368 DOI: 10.1038/s41396-018-0234-6  0.496
2018 Etalo DW, Jeon JS, Raaijmakers JM. Modulation of plant chemistry by beneficial root microbiota. Natural Product Reports. PMID 29722774 DOI: 10.1039/c7np00057j  0.576
2018 Dini-Andreote F, Raaijmakers JM. Embracing Community Ecology in Plant Microbiome Research. Trends in Plant Science. 23: 467-469. PMID 29655918 DOI: 10.1016/j.tplants.2018.03.013  0.461
2018 Mommer L, Cotton TEA, Raaijmakers JM, Termorshuizen AJ, van Ruijven J, Hendriks M, van Rijssel SQ, van de Mortel JE, van der Paauw JW, Schijlen EGWM, Smit-Tiekstra AE, Berendse F, de Kroon H, Dumbrell AJ. Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity. The New Phytologist. 218: 542-553. PMID 29468690 DOI: 10.1111/nph.15036  0.518
2018 van der Meij A, Willemse J, Schneijderberg MA, Geurts R, Raaijmakers JM, van Wezel GP. Inter- and intracellular colonization of Arabidopsis roots by endophytic actinobacteria and the impact of plant hormones on their antimicrobial activity. Antonie Van Leeuwenhoek. PMID 29335919 DOI: 10.1007/s10482-018-1014-z  0.531
2018 Berg G, Raaijmakers JM. Saving seed microbiomes. The Isme Journal. 12: 1167-1170. PMID 29335636 DOI: 10.1038/s41396-017-0028-2  0.543
2017 Mendes LW, Raaijmakers JM, de Hollander M, Mendes R, Tsai SM. Influence of resistance breeding in common bean on rhizosphere microbiome composition and function. The Isme Journal. PMID 29028000 DOI: 10.1038/ismej.2017.158  0.37
2017 Cheng X, Etalo DW, van de Mortel JE, Dekkers E, Nguyen L, Medema MH, Raaijmakers JM. Genome-wide analysis of bacterial determinants of plant growth promotion and induced systemic resistance by Pseudomonas fluorescens. Environmental Microbiology. PMID 28892231 DOI: 10.1111/1462-2920.13927  0.487
2017 Cordovez V, Mommer L, Moisan K, Lucas-Barbosa D, Pierik R, Mumm R, Carrion VJ, Raaijmakers JM. Plant Phenotypic and Transcriptional Changes Induced by Volatiles from the Fungal Root Pathogen . Frontiers in Plant Science. 8: 1262. PMID 28785271 DOI: 10.3389/fpls.2017.01262  0.507
2017 Pérez-Jaramillo JE, Carrión VJ, Bosse M, Ferrão LFV, de Hollander M, Garcia AAF, Ramírez CA, Mendes R, Raaijmakers JM. Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits. The Isme Journal. PMID 28585939 DOI: 10.1038/ismej.2017.85  0.457
2017 Pangesti N, Vandenbrande S, Pineda A, Dicke M, Raaijmakers JM, Van Loon JJA. Antagonism between two root-associated beneficial Pseudomonas strains does not affect plant growth promotion and induced resistance against a leaf-chewing herbivore. Fems Microbiology Ecology. 93. PMID 28334335 DOI: 10.1093/femsec/fix038  0.494
2016 Weisskopf L, Ryu CM, Raaijmakers JM, Garbeva P. Editorial: Smelly Fumes: Volatile-Mediated Communication between Bacteria and Other Organisms. Frontiers in Microbiology. 7: 2031. PMID 28066357 DOI: 10.3389/Fmicb.2016.02031  0.57
2016 Cheng X, Cordovez V, Etalo DW, van der Voort M, Raaijmakers JM. Role of the GacS Sensor Kinase in the Regulation of Volatile Production by Plant Growth-Promoting Pseudomonas fluorescens SBW25. Frontiers in Plant Science. 7: 1706. PMID 27917180 DOI: 10.3389/fpls.2016.01706  0.406
2016 Flury P, Aellen N, Ruffner B, Péchy-Tarr M, Fataar S, Metla Z, Dominguez-Ferreras A, Bloemberg G, Frey J, Goesmann A, Raaijmakers JM, Duffy B, Höfte M, Blom J, Smits TH, et al. Insect pathogenicity in plant-beneficial pseudomonads: phylogenetic distribution and comparative genomics. The Isme Journal. PMID 26894448 DOI: 10.1038/ismej.2016.5  0.393
2016 van der Voort M, Kempenaar M, van Driel M, Raaijmakers JM, Mendes R. Impact of soil heat on reassembly of bacterial communities in the rhizosphere microbiome and plant disease suppression. Ecology Letters. PMID 26833547 DOI: 10.1111/ele.12567  0.314
2015 Cordovez V, Carrion VJ, Etalo DW, Mumm R, Zhu H, van Wezel GP, Raaijmakers JM. Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil. Frontiers in Microbiology. 6: 1081. PMID 26500626 DOI: 10.3389/fmicb.2015.01081  0.3
2015 Pérez-Jaramillo JE, Mendes R, Raaijmakers JM. Impact of plant domestication on rhizosphere microbiome assembly and functions. Plant Molecular Biology. PMID 26085172 DOI: 10.1007/s11103-015-0337-7  0.597
2015 Chapelle E, Mendes R, Bakker PA, Raaijmakers JM. Fungal invasion of the rhizosphere microbiome. The Isme Journal. PMID 26023875 DOI: 10.1038/ismej.2015.82  0.391
2015 Park YS, Dutta S, Ann M, Raaijmakers JM, Park K. Promotion of plant growth by Pseudomonas fluorescens strain SS101 via novel volatile organic compounds. Biochemical and Biophysical Research Communications. 461: 361-5. PMID 25892516 DOI: 10.1016/j.bbrc.2015.04.039  0.487
2015 Zachow C, Jahanshah G, de Bruijn I, Song C, Ianni F, Pataj Z, Gerhardt H, Pianet I, Lämmerhofer M, Berg G, Gross H, Raaijmakers JM. The Novel Lipopeptide Poaeamide of the Endophyte Pseudomonas poae RE*1-1-14 Is Involved in Pathogen Suppression and Root Colonization. Molecular Plant-Microbe Interactions : Mpmi. MPMI12140406R. PMID 25761208 DOI: 10.1094/MPMI-12-14-0406-R  0.334
2015 Song C, van der Voort M, van de Mortel J, Hassan KA, Elbourne LD, Paulsen IT, Loper JE, Raaijmakers JM. The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis. Microbial Biotechnology. 8: 296-310. PMID 25488342 DOI: 10.1111/1751-7915.12190  0.449
2014 Schmidt Y, Van Der Voort M, Crüsemann M, Piel J, Josten M, Sahl HG, Miess H, Raaijmakers JM, Gross H. Biosynthetic origin of the antibiotic cyclocarbamate brabantamide A (SB-253514) in Plant-associated pseudomonas Chembiochem. 15: 259-266. PMID 24436210 DOI: 10.1002/cbic.201300527  0.365
2013 Philippot L, Raaijmakers JM, Lemanceau P, van der Putten WH. Going back to the roots: the microbial ecology of the rhizosphere. Nature Reviews. Microbiology. 11: 789-99. PMID 24056930 DOI: 10.1038/nrmicro3109  0.497
2013 Mendes R, Garbeva P, Raaijmakers JM. The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms. Fems Microbiology Reviews. 37: 634-63. PMID 23790204 DOI: 10.1111/1574-6976.12028  0.546
2012 Raaijmakers JM, Mazzola M. Diversity and natural functions of antibiotics produced by beneficial and plant pathogenic bacteria. Annual Review of Phytopathology. 50: 403-24. PMID 22681451 DOI: 10.1146/annurev-phyto-081211-172908  0.384
2012 Ghirardi S, Dessaint F, Mazurier S, Corberand T, Raaijmakers JM, Meyer JM, Dessaux Y, Lemanceau P. Identification of traits shared by rhizosphere-competent strains of fluorescent pseudomonads. Microbial Ecology. 64: 725-37. PMID 22576821 DOI: 10.1007/s00248-012-0065-3  0.309
2010 Raaijmakers JM, De Bruijn I, Nybroe O, Ongena M. Natural functions of lipopeptides from Bacillus and Pseudomonas: more than surfactants and antibiotics. Fems Microbiology Reviews. 34: 1037-62. PMID 20412310 DOI: 10.1111/j.1574-6976.2010.00221.x  0.348
2010 Mavrodi DV, Peever TL, Mavrodi OV, Parejko JA, Raaijmakers JM, Lemanceau P, Mazurier S, Heide L, Blankenfeldt W, Weller DM, Thomashow LS. Diversity and evolution of the phenazine biosynthesis pathway. Applied and Environmental Microbiology. 76: 866-79. PMID 20008172 DOI: 10.1128/Aem.02009-09  0.372
2009 Kruijt M, Tran H, Raaijmakers JM. Functional, genetic and chemical characterization of biosurfactants produced by plant growth-promoting Pseudomonas putida 267. Journal of Applied Microbiology. 107: 546-56. PMID 19302489 DOI: 10.1111/j.1365-2672.2009.04244.x  0.458
2008 Schouten A, Maksimova O, Cuesta-Arenas Y, van den Berg G, Raaijmakers JM. Involvement of the ABC transporter BcAtrB and the laccase BcLCC2 in defence of Botrytis cinerea against the broad-spectrum antibiotic 2,4-diacetylphloroglucinol. Environmental Microbiology. 10: 1145-57. PMID 18218030 DOI: 10.1111/j.1462-2920.2007.01531.x  0.322
2007 Mendes R, Pizzirani-Kleiner AA, Araujo WL, Raaijmakers JM. Diversity of cultivated endophytic bacteria from sugarcane: genetic and biochemical characterization of Burkholderia cepacia complex isolates. Applied and Environmental Microbiology. 73: 7259-67. PMID 17905875 DOI: 10.1128/AEM.01222-07  0.395
2007 Tran H, Ficke A, Asiimwe T, Höfte M, Raaijmakers JM. Role of the cyclic lipopeptide massetolide A in biological control of Phytophthora infestans and in colonization of tomato plants by Pseudomonas fluorescens. The New Phytologist. 175: 731-42. PMID 17688588 DOI: 10.1111/J.1469-8137.2007.02138.X  0.418
2007 de Bruijn I, de Kock MJ, Yang M, de Waard P, van Beek TA, Raaijmakers JM. Genome-based discovery, structure prediction and functional analysis of cyclic lipopeptide antibiotics in Pseudomonas species. Molecular Microbiology. 63: 417-28. PMID 17241198 DOI: 10.1111/j.1365-2958.2006.05525.x  0.353
2007 Raaijmakers JM, de Bruijn I, de Kock MJ. Cyclic lipopeptide production by plant-associated Pseudomonas spp.: diversity, activity, biosynthesis, and regulation. Molecular Plant-Microbe Interactions : Mpmi. 19: 699-710. PMID 16838783 DOI: 10.1094/MPMI-19-0699  0.315
2005 Frey-Klett P, Chavatte M, Clausse ML, Courrier S, Le Roux C, Raaijmakers J, Martinotti MG, Pierrat JC, Garbaye J. Ectomycorrhizal symbiosis affects functional diversity of rhizosphere fluorescent pseudomonads. The New Phytologist. 165: 317-28. PMID 15720643 DOI: 10.1111/j.1469-8137.2004.01212.x  0.404
2004 Bergsma-Vlami M, Prins ME, Raaijmakers JM. Influence of plant species on population dynamics, genotypic diversity and antibiotic production in the rhizosphere by indigenous Pseudomonas spp. Fems Microbiology Ecology. 52: 59-69. PMID 16329893 DOI: 10.1016/j.femsec.2004.10.007  0.424
2003 de Souza JT, Arnould C, Deulvot C, Lemanceau P, Gianinazzi-Pearson V, Raaijmakers JM. Effect of 2,4-diacetylphloroglucinol on pythium: cellular responses and variation in sensitivity among propagules and species. Phytopathology. 93: 966-75. PMID 18943863 DOI: 10.1094/PHYTO.2003.93.8.966  0.316
2003 Duffy B, Schouten A, Raaijmakers JM. Pathogen self-defense: mechanisms to counteract microbial antagonism,. Annual Review of Phytopathology. 41: 501-38. PMID 12730392 DOI: 10.1146/annurev.phyto.41.052002.095606  0.464
2003 Raaijmakers JM, Vlami M, de Souza JT. Antibiotic production by bacterial biocontrol agents. Antonie Van Leeuwenhoek. 81: 537-47. PMID 12448749 DOI: 10.1023/a:1020501420831  0.385
2002 Landa BB, Mavrodi OV, Raaijmakers JM, McSpadden Gardener BB, Thomashow LS, Weller DM. Differential ability of genotypes of 2,4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains to colonize the roots of pea plants. Applied and Environmental Microbiology. 68: 3226-37. PMID 12088998 DOI: 10.1128/Aem.68.7.3226-3237.2002  0.353
Show low-probability matches.