| Year | Citation | Score | |||
|---|---|---|---|---|---|
| 2023 | Wen S, Li N, Song S, Liu N, Ding Y. Comparative Transcriptome and Metabolome Analyses of Broccoli Germplasms with Purple and Green Curds Reveal the Structural Genes and Transitional Regulators Regulating Color Formation. International Journal of Molecular Sciences. 24. PMID 37047084 DOI: 10.3390/ijms24076115 | 0.329 | |||
| 2022 | Duan G, Wu G, Chen X, Tian D, Li Z, Sun Y, Du Z, Hao L, Song S, Gao Y, Xiao J, Zhang Z, Bao Y, Tang B, Zhao W. HGD: an integrated homologous gene database across multiple species. Nucleic Acids Research. PMID 36318261 DOI: 10.1093/nar/gkac970 | 0.315 | |||
| 2020 | Liu S, Li C, Wang H, Wang S, Yang S, Liu X, Yan J, Li B, Beatty M, Zastrow-Hayes G, Song S, Qin F. Mapping regulatory variants controlling gene expression in drought response and tolerance in maize. Genome Biology. 21: 163. PMID 32631406 DOI: 10.1186/S13059-020-02069-1 | 0.416 | |||
| 2020 | Yan J, Zou D, Li C, Zhang Z, Song S, Wang X. SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice. Genomics, Proteomics & Bioinformatics. PMID 32619768 DOI: 10.1016/J.Gpb.2020.03.002 | 0.321 | |||
| 2020 | Liu L, Wang G, Wang L, Yu C, Li M, Song S, Hao L, Ma L, Zhang Z. Computational identification and characterization of glioma candidate biomarkers through multi-omics integrative profiling. Biology Direct. 15: 10. PMID 32539851 DOI: 10.1186/S13062-020-00264-5 | 0.303 | |||
| 2020 | Zhang Z, Song S, Yu J, Zhao W, Xiao J, Bao Y. The Elements of Data Sharing. Genomics, Proteomics & Bioinformatics. PMID 32360769 DOI: 10.1016/J.Gpb.2020.04.001 | 0.321 | |||
| 2019 | Tian D, Wang P, Tang B, Teng X, Li C, Liu X, Zou D, Song S, Zhang Z. GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. Nucleic Acids Research. PMID 31566222 DOI: 10.1093/Nar/Gkz828 | 0.341 | |||
| 2019 | Du Z, Ma L, Qu H, Chen W, Zhang B, Lu X, Zhai W, Sheng X, Sun Y, Li W, Lei M, Qi Q, Yuan N, Shi S, Zeng J, ... ... Song S, et al. Whole Genome Analyses of Chinese Population and De Novo Assembly of A Northern Han Genome. Genomics, Proteomics & Bioinformatics. PMID 31494266 DOI: 10.1016/J.Gpb.2019.07.002 | 0.359 | |||
| 2019 | Song S, Tian D, Zhang Z, Hu S, Yu J. Rice Genomics: Over the Past Two Decades and Into the Future. Genomics, Proteomics & Bioinformatics. PMID 30771506 DOI: 10.1016/J.Gpb.2019.01.001 | 0.418 | |||
| 2018 | Jiang LG, Li B, Liu SX, Wang HW, Li CP, Song SH, Beatty M, Zastrow-Hayes G, Yang XH, Qin F, He Y. Characterization of proteome variation during modern maize breeding. Molecular & Cellular Proteomics : McP. PMID 30409858 DOI: 10.1074/Mcp.Ra118.001021 | 0.416 | |||
| 2018 | Xu X, Hao L, Zhu J, Tang B, Zhou Q, Song F, Chen T, Zhang S, Dong L, Lan L, Wang Y, Sang J, Liang F, Cao J, Liu F, ... ... Song S, et al. Database Resources of the BIG Data Center in 2018 Nucleic Acids Research. 46. PMID 29036542 DOI: 10.1093/Nar/Gkx897 | 0.378 | |||
| 2017 | Song S, Tian D, Li C, Tang B, Dong L, Xiao J, Bao Y, Zhao W, He H, Zhang Z. Genome Variation Map: a data repository of genome variations in BIG Data Center. Nucleic Acids Research. PMID 29069473 DOI: 10.1093/Nar/Gkx986 | 0.364 | |||
| 2017 | Chang M, Lv H, Zhang W, Ma C, He X, Zhao S, Zhang ZW, Zeng YX, Song S, Niu Y, Tong WM. Region-specific RNA m(6)A methylation represents a new layer of control in the gene regulatory network in the mouse brain. Open Biology. 7. PMID 28931651 DOI: 10.1098/Rsob.170166 | 0.326 | |||
| 2016 | Zhang H, Zhang C, Yan J, Sun Z, Song S, Sun Y, Guo C. Transcriptome analysis of the responses to methyl methanesulfonate treatment in mouse pachytene spermatocytes and round spermatids. Gene. PMID 27720830 DOI: 10.1016/J.Gene.2016.10.006 | 0.361 | |||
| 2016 | Li D, Huang Z, Song S, Xin Y, Mao D, Lv Q, Zhou M, Tian D, Tang M, Wu Q, Liu X, Chen T, Song X, Fu X, Zhao B, et al. Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase. Proceedings of the National Academy of Sciences of the United States of America. PMID 27663737 DOI: 10.1073/Pnas.1610115113 | 0.468 | |||
| 2015 | Xiao Y, Wu Y, Sun K, Wang H, Zhang B, Song S, Du Z, Jiang T, Shi L, Wang L, Lin A, Yue X, Li C, Chen T, Feng J. Differential Expression of Hepatic Genes of the Greater Horseshoe Bat (Rhinolophus ferrumequinum) between the Summer Active and Winter Torpid States. Plos One. 10: e0145702. PMID 26698122 DOI: 10.1371/Journal.Pone.0145702 | 0.386 | |||
| 2015 | Wang XL, Song SH, Wu YS, Li YL, Chen TT, Huang ZY, Liu S, Dunwell TL, Pfeifer GP, Dunwell JM, Wamaedeesa R, Ullah I, Wang Y, Hu SN. Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes. Journal of Experimental Botany. PMID 26272901 DOI: 10.1093/Jxb/Erv372 | 0.408 | |||
| 2015 | Li Y, Wang X, Chen T, Yao F, Li C, Tang Q, Sun M, Sun G, Hu S, Yu J, Song S. RNA-Seq Based De Novo Transcriptome Assembly and Gene Discovery of Cistanche deserticola Fleshy Stem. Plos One. 10: e0125722. PMID 25938435 DOI: 10.1371/Journal.Pone.0125722 | 0.444 | |||
| 2014 | Li Y, Wang X, Li C, Hu S, Yu J, Song S. Transcriptome-wide N⁶-methyladenosine profiling of rice callus and leaf reveals the presence of tissue-specific competitors involved in selective mRNA modification. Rna Biology. 11: 1180-8. PMID 25483034 DOI: 10.4161/Rna.36281 | 0.469 | |||
| 2014 | Zhao X, Yang Y, Sun BF, Shi Y, Yang X, Xiao W, Hao YJ, Ping XL, Chen YS, Wang WJ, Jin KX, Wang X, Huang CM, Fu Y, Ge XM, ... Song SH, et al. FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis. Cell Research. 24: 1403-19. PMID 25412662 DOI: 10.1038/Cr.2014.151 | 0.385 | |||
| 2014 | Di R, He J, Song S, Tian D, Liu Q, Liang X, Ma Q, Sun M, Wang J, Zhao W, Cao G, Wang J, Yang Z, Ge Y, Chu M. Characterization and comparative profiling of ovarian microRNAs during ovine anestrus and the breeding season. Bmc Genomics. 15: 899. PMID 25318541 DOI: 10.1186/1471-2164-15-899 | 0.314 | |||
| 2014 | Tang M, Mao D, Xu L, Li D, Song S, Chen C. Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings. Bmc Genomics. 15: 835. PMID 25273267 DOI: 10.1186/1471-2164-15-835 | 0.302 | |||
| 2014 | An H, Douillard FP, Wang G, Zhai Z, Yang J, Song S, Cui J, Ren F, Luo Y, Zhang B, Hao Y. Integrated transcriptomic and proteomic analysis of the bile stress response in a centenarian-originated probiotic Bifidobacterium longum BBMN68. Molecular & Cellular Proteomics : McP. 13: 2558-72. PMID 24965555 DOI: 10.1074/Mcp.M114.039156 | 0.375 | |||
| 2014 | Cui J, Liu S, Zhang B, Wang H, Sun H, Song S, Qiu X, Liu Y, Wang X, Jiang Z, Liu Z. Transciptome analysis of the gill and swimbladder of Takifugu rubripes by RNA-Seq. Plos One. 9: e85505. PMID 24454879 DOI: 10.1371/Journal.Pone.0085505 | 0.411 | |||
| 2014 | Chen X, Luo Y, Yu H, Sun Y, Wu H, Song S, Hu S, Dong Z. Transcriptional profiling of biomass degradation-related genes during Trichoderma reesei growth on different carbon sources. Journal of Biotechnology. 173: 59-64. PMID 24445169 DOI: 10.1016/J.Jbiotec.2014.01.011 | 0.437 | |||
| 2013 | Li YL, Yu J, Song SH. [Recent progresses in RNA N6-methyladenosine research]. Yi Chuan = Hereditas / Zhongguo Yi Chuan Xue Hui Bian Ji. 35: 1340-51. PMID 24645343 DOI: 10.3724/Sp.J.1005.2013.01340 | 0.44 | |||
| 2013 | Ma JY, Li M, Luo YB, Song S, Tian D, Yang J, Zhang B, Hou Y, Schatten H, Liu Z, Sun QY. Maternal factors required for oocyte developmental competence in mice: transcriptome analysis of non-surrounded nucleolus (NSN) and surrounded nucleolus (SN) oocytes. Cell Cycle (Georgetown, Tex.). 12: 1928-38. PMID 23673344 DOI: 10.4161/Cc.24991 | 0.308 | |||
| 2013 | Li Y, Song S, Li C, Yu J. MeRIP-PF: an easy-to-use pipeline for high-resolution peak-finding in MeRIP-Seq data. Genomics, Proteomics & Bioinformatics. 11: 72-5. PMID 23434047 DOI: 10.1016/J.Gpb.2013.01.002 | 0.426 | |||
| 2013 | Zheng G, Dahl JA, Niu Y, Fedorcsak P, Huang CM, Li CJ, Vågbø CB, Shi Y, Wang WL, Song SH, Lu Z, Bosmans RP, Dai Q, Hao YJ, Yang X, et al. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. Molecular Cell. 49: 18-29. PMID 23177736 DOI: 10.1016/J.Molcel.2012.10.015 | 0.339 | |||
| 2012 | Ma L, Nie L, Liu J, Zhang B, Song S, Sun M, Yang J, Yang Y, Fang X, Hu S, Zhao Y, Yu J. An RNA-seq-based gene expression profiling of radiation-induced tumorigenic mammary epithelial cells. Genomics, Proteomics & Bioinformatics. 10: 326-35. PMID 23317700 DOI: 10.1016/J.Gpb.2012.11.001 | 0.51 | |||
| 2012 | Jin J, Zhang B, Guo H, Cui J, Jiang L, Song S, Sun M, Ren F. Mechanism analysis of acid tolerance response of bifidobacterium longum subsp. longum BBMN 68 by gene expression profile using RNA-sequencing. Plos One. 7: e50777. PMID 23236393 DOI: 10.1371/Journal.Pone.0050777 | 0.343 | |||
| 2012 | Sun P, Song S, Zhou L, Zhang B, Qi J, Li X. Transcriptome analysis reveals putative genes involved in iridoid biosynthesis in Rehmannia glutinosa. International Journal of Molecular Sciences. 13: 13748-63. PMID 23202979 DOI: 10.3390/Ijms131013748 | 0.468 | |||
| 2012 | Ma JY, Li M, Ge ZJ, Luo Y, Ou XH, Song S, Tian D, Yang J, Zhang B, Ou-Yang YC, Hou Y, Liu Z, Schatten H, Sun QY. Whole transcriptome analysis of the effects of type I diabetes on mouse oocytes. Plos One. 7: e41981. PMID 22911868 DOI: 10.1371/Journal.Pone.0041981 | 0.304 | |||
| 2012 | Cui P, Liu W, Zhao Y, Lin Q, Zhang D, Ding F, Xin C, Zhang Z, Song S, Sun F, Yu J, Hu S. Comparative analyses of H3K4 and H3K27 trimethylations between the mouse cerebrum and testis. Genomics, Proteomics & Bioinformatics. 10: 82-93. PMID 22768982 DOI: 10.1016/J.Gpb.2012.05.007 | 0.514 | |||
| 2012 | Cui P, Liu W, Zhao Y, Lin Q, Ding F, Xin C, Geng J, Song S, Sun F, Hu S, Yu J. The association between H3K4me3 and antisense transcription. Genomics, Proteomics & Bioinformatics. 10: 74-81. PMID 22768981 DOI: 10.1016/J.Gpb.2012.05.001 | 0.484 | |||
| 2011 | Liu W, Zhao Y, Cui P, Lin Q, Ding F, Xin C, Tan X, Song S, Yu J, Hu S. Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing. Frontiers in Genetics. 2: 93. PMID 22303387 DOI: 10.3389/Fgene.2011.00093 | 0.482 | |||
| 2011 | Zhao W, Liu W, Tian D, Tang B, Wang Y, Yu C, Li R, Ling Y, Wu J, Song S, Hu S. wapRNA: a web-based application for the processing of RNA sequences. Bioinformatics (Oxford, England). 27: 3076-7. PMID 21896507 DOI: 10.1093/Bioinformatics/Btr504 | 0.351 | |||
| 2010 | Liu W, Huang D, Liu K, Hu S, Yu J, Gao G, Song S. Discovery, identification and comparative analysis of non-specific lipid transfer protein (nsLtp) family in Solanaceae. Genomics, Proteomics & Bioinformatics. 8: 229-37. PMID 21382591 DOI: 10.1016/S1672-0229(10)60024-1 | 0.388 | |||
| 2010 | Yang M, Song S, Liu G, Chen K, Tian X, Zhao ZJ, Hu S, Yu J. A comprehensive analysis of protein phosphatases in rice and Arabidopsis Plant Systematics and Evolution. 289: 111-126. DOI: 10.1007/S00606-010-0336-8 | 0.445 | |||
| 2009 | Xu X, Song S, Wang Q, Qin F, Liu K, Zhang X, Hu S, Zhao Y. Analysis and comparison of a set of expressed sequence tags of the parthenogenetic water flea Daphnia carinata. Molecular Genetics and Genomics : Mgg. 282: 197-203. PMID 19468756 DOI: 10.1007/S00438-009-0459-1 | 0.402 | |||
| 2009 | Song S, Huang Y, Wang X, Wei G, Qu H, Wang W, Ge X, Hu S, Liu G, Liang Y, Yu J. HRGD: a database for mining potential heterosis-related genes in plants. Plant Molecular Biology. 69: 255-60. PMID 19011765 DOI: 10.1007/S11103-008-9421-6 | 0.518 | |||
| 2009 | Zhao D, Song S, Wang Q, Zhang X, Hu S, Chen L. Discovery of immune-related genes in Chinese mitten crab (Eriocheir sinensis) by expressed sequence tag analysis of haemocytes Aquaculture. 287: 297-303. DOI: 10.1016/J.Aquaculture.2008.10.050 | 0.398 | |||
| 2008 | Ge X, Chen W, Song S, Wang W, Hu S, Yu J. Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines Bmc Plant Biology. 8. PMID 19000321 DOI: 10.1186/1471-2229-8-114 | 0.499 | |||
| 2008 | Wang W, Meng B, Ge X, Song S, Yang Y, Yu X, Wang L, Hu S, Liu S, Yu J. Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental lines. Proteomics. 8: 4808-21. PMID 18850630 DOI: 10.1002/Pmic.200701164 | 0.529 | |||
| 2008 | Zhu J, He F, Song S, Wang J, Yu J. How many human genes can be defined as housekeeping with current expression data? Bmc Genomics. 9: 172. PMID 18416810 DOI: 10.1186/1471-2164-9-172 | 0.495 | |||
| 2007 | Song S, Qu H, Chen C, Hu S, Yu J. Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L) and its parental lines based on SAGE data. Bmc Plant Biology. 7: 49. PMID 17877838 DOI: 10.1186/1471-2229-7-49 | 0.491 | |||
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