Henry Huang - Related publications

Biomathematics University of California, Los Angeles, Los Angeles, CA 
Positron emission computed tomography and physiological modeling
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Behera RK, Mlynek KD, Linz MS, Brinsmade SR. A Fluorescence-based Method to Study Bacterial Gene Regulation in Infected Tissues. Journal of Visualized Experiments : Jove. PMID 30855576 DOI: 10.3791/59055   
2019 Zhang J, Chen H, Li R, Taft DA, Yao G, Bai F, Xing J. Spatial clustering and common regulatory elements correlate with coordinated gene expression. Plos Computational Biology. 15: e1006786. PMID 30822341 DOI: 10.1371/journal.pcbi.1006786   
2019 Al-Allaf FA, Abduljaleel Z, Athar M, Taher MM, Khan W, Mehmet H, Colakogullari M, Apostolidou S, Bigger B, Waddington S, Coutelle C, Themis M, Al-Ahdal MN, Al-Mohanna FA, Al-Hassnan ZN, et al. Modifying inter-cistronic sequence significantly enhances IRES dependent second gene expression in bicistronic vector: Construction of optimised cassette for gene therapy of familial hypercholesterolemia. Non-Coding Rna Research. 4: 1-14. PMID 30891532 DOI: 10.1016/j.ncrna.2018.11.005   
2019 Martini MC, Zhou Y, Sun H, Shell SS. Defining the Transcriptional and Post-transcriptional Landscapes of in Aerobic Growth and Hypoxia. Frontiers in Microbiology. 10: 591. PMID 30984135 DOI: 10.3389/fmicb.2019.00591   
2019 Brown A, Winter J, Gapinske M, Tague N, Woods WS, Perez-Pinera P. Multiplexed and tunable transcriptional activation by promoter insertion using nuclease-assisted vector integration. Nucleic Acids Research. PMID 30931472 DOI: 10.1093/nar/gkz210   
2019 Román E, Coman I, Prieto D, Alonso-Monge R, Pla J. Implementation of a CRISPR-Based System for Gene Regulation in . Msphere. 4. PMID 30760608 DOI: 10.1128/mSphere.00001-19   
2019 Kominek J, Doering DT, Opulente DA, Shen XX, Zhou X, DeVirgilio J, Hulfachor AB, Groenewald M, Mcgee MA, Karlen SD, Kurtzman CP, Rokas A, Hittinger CT. Eukaryotic Acquisition of a Bacterial Operon. Cell. PMID 30799038 DOI: 10.1016/j.cell.2019.01.034   
2019 Shah K, Cao W, Ellison CE. Adenine Methylation in Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes. G3 (Bethesda, Md.). PMID 30988038 DOI: 10.1534/g3.119.400023   
2019 Ma JQ, Wei LJ, Lin A, Zhang C, Sun W, Yang B, Lu K, Li JN. Infected with . Genes. 10. PMID 30979089 DOI: 10.3390/genes10040296   
2019 Cera A, Holganza MK, Hardan AA, Gamarra I, Eldabagh RS, Deschaine M, Elkamhawy S, Sisso EM, Foley JJ, Arnone JT. Functionally Related Genes Cluster into Genomic Regions That Coordinate Transcription at a Distance in Saccharomyces cerevisiae. Msphere. 4. PMID 30867326 DOI: 10.1128/mSphere.00063-19   
2019 Naiyer S, Kaur D, Ahamad J, Singh SS, Singh YP, Thakur V, Bhattacharya A, Bhattacharya S. Transcriptomic analysis reveals novel downstream regulatory motifs and highly transcribed virulence factor genes of Entamoeba histolytica. Bmc Genomics. 20: 206. PMID 30866809 DOI: 10.1186/s12864-019-5570-z   
2019 Oulhen N, Foster S, Wray G, Wessel G. Identifying gene expression from single cells to single genes. Methods in Cell Biology. 151: 127-158. PMID 30948004 DOI: 10.1016/bs.mcb.2018.11.018   
2019 Mirisis AA, Carew TJ. The ELAV family of RNA-binding proteins in synaptic plasticity and long-term memory. Neurobiology of Learning and Memory. PMID 30998973 DOI: 10.1016/j.nlm.2019.04.007   
2019 Narra HP, Sahni A, Khanipov K, Fofanov Y, Sahni SK. Global Transcriptomic Profiling of Pulmonary Gene Expression in an Experimental Murine Model of Infection. Genes. 10. PMID 30857242 DOI: 10.3390/genes10030204   
2019 Vander Schaaf NA, Oghamian S, Park JA, Kang L, Laird PW, Lee KH. In vivo Application of the REMOTE-control System for the Manipulation of Endogenous Gene Expression. Journal of Visualized Experiments : Jove. PMID 30985765 DOI: 10.3791/59235   
2019 Gomez-Gonzalez PJ, Andreu N, Phelan JE, de Sessions PF, Glynn JR, Crampin AC, Campino S, Butcher PD, Hibberd ML, Clark TG. An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome. Scientific Reports. 9: 5204. PMID 30914757 DOI: 10.1038/s41598-019-41692-2   
2019 Paul S, Stamnes M, Thomas GH, Liu H, Hagiwara D, Gomi K, Filler SG, Moye-Rowley WS. AtrR Is an Essential Determinant of Azole Resistance in Aspergillus fumigatus. Mbio. 10. PMID 30862750 DOI: 10.1128/mBio.02563-18   
2019 Song KH, Kwak CH, Chung TW, Ha SH, Park JY, Ha KT, Cho SH, Lee YC, Kim CH. Intestine specific regulation of pig cytidine-5'-monophospho-N-acetylneuraminic acid hydroxylase gene for N-glycolylneuraminic acid biosynthesis. Scientific Reports. 9: 4292. PMID 30862964 DOI: 10.1038/s41598-019-40522-9   
2019 Huang D, Petrykowska HM, Miller BF, Elnitski L, Ovcharenko I. Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression. Genome Research. PMID 30886051 DOI: 10.1101/gr.247007.118   
2019 Yu H, Khalid MHB, Lu F, Sun F, Qu J, Liu B, Li W, Fu F. Isolation and identification of a vegetative organ-specific promoter from maize. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 25: 277-287. PMID 30804649 DOI: 10.1007/s12298-018-0546-z   
2019 Savell KE, Bach SV, Zipperly ME, Revanna JS, Goska NA, Tuscher JJ, Duke CG, Sultan FA, Burke JN, Williams D, Ianov L, Day JJ. A Neuron-Optimized CRISPR/dCas9 Activation System for Robust and Specific Gene Regulation. Eneuro. 6. PMID 30863790 DOI: 10.1523/ENEURO.0495-18.2019   
2019 Thormann V, Glaser LV, Rothkegel MC, Borschiwer M, Bothe M, Fuchs A, Meijsing SH. Expanding the repertoire of glucocorticoid receptor target genes by engineering genomic response elements. Life Science Alliance. 2. PMID 30867223 DOI: 10.26508/lsa.201800283   
2019 Xiang M, Zhang W, Wen H, Mo L, Zhao Y, Zhan Y. Comparative transcriptome analysis of human conjunctiva between normal and conjunctivochalasis persons by RNA sequencing. Experimental Eye Research. PMID 30999002 DOI: 10.1016/j.exer.2019.04.005   
2019 Wang M, Qiu L, Ru X, Song Y, Zhang Y. Distinct isoforms of Nrf1 diversely regulate different subsets of its cognate target genes. Scientific Reports. 9: 2960. PMID 30814566 DOI: 10.1038/s41598-019-39536-0   
2019 Saleembhasha A, Mishra S. Long non-coding RNAs as pan-cancer master gene regulators of associated protein-coding genes: a systems biology approach. Peerj. 7: e6388. PMID 30809433 DOI: 10.7717/peerj.6388   
2019 Zhang Y, Leclercq J, Wu S, Ortega-Abboud E, Pointet S, Tang C, Hu S, Montoro P. Genome-wide analysis in Hevea brasiliensis laticifers revealed species-specific post-transcriptional regulations of several redox-related genes. Scientific Reports. 9: 5701. PMID 30952924 DOI: 10.1038/s41598-019-42197-8   
2019 Molina MD, Gache C, Lepage T. Expression of exogenous mRNAs to study gene function in echinoderm embryos. Methods in Cell Biology. 151: 239-282. PMID 30948011 DOI: 10.1016/bs.mcb.2018.10.011   
2019 Liu L, Li QZ, Jin W, Lv H, Lin H. Revealing Gene Function and Transcription Relationship by Reconstructing Gene-Level Chromatin Interaction. Computational and Structural Biotechnology Journal. 17: 195-205. PMID 30828411 DOI: 10.1016/j.csbj.2019.01.011   
2019 Azizi Z, Mirtavoos-Mahyari H, Karimi R, Noroozi Z, Motevaseli E. Long non-coding RNAs: Diverse roles in various disorders. Human Antibodies. PMID 30909207 DOI: 10.3233/HAB-190374   
2019 Owens NDL, De Domenico E, Gilchrist MJ. An RNA-Seq Protocol for Differential Expression Analysis. Cold Spring Harbor Protocols. PMID 30952685 DOI: 10.1101/pdb.prot098368   
2019 Ravindran SP, Herrmann M, Cordellier M. Contrasting patterns of divergence at the regulatory and sequence level in European natural populations. Ecology and Evolution. 9: 2487-2504. PMID 30891195 DOI: 10.1002/ece3.4894   
2019 Cardozo LE, Russo PST, Gomes-Correia B, Araujo-Pereira M, Sepúlveda-Hermosilla G, Maracaja-Coutinho V, Nakaya HI. webCEMiTool: Co-expression Modular Analysis Made Easy. Frontiers in Genetics. 10: 146. PMID 30894872 DOI: 10.3389/fgene.2019.00146   
2019 Pristovsek N, Nallapereddy S, Grav LM, Hefzi H, Lewis NE, Rugbjerg P, Hansen HG, Lee GM, Andersen MR, Kildegaard HF. Systematic Evaluation of Site-Specific Recombinant Gene Expression for Programmable Mammalian Cell Engineering. Acs Synthetic Biology. PMID 30807689 DOI: 10.1021/acssynbio.8b00453   
2019 Zhang H, Fu Y, Guo H, Zhang L, Wang C, Song W, Yan Z, Wang Y, Ji W. Transcriptome and Proteome-Based Network Analysis Reveals a Model of Gene Activation in Wheat Resistance to Stripe Rust. International Journal of Molecular Sciences. 20. PMID 30836695 DOI: 10.3390/ijms20051106   
2019 Xie LH, Quan X, Zhang J, Yang YY, Sun RH, Xia MC, Xue BG, Wu C, Han XY, Xue YN, Yang LR. Selection of Reference Genes for Real-time Quantitative PCR Normalization in the Process of var. Infecting Wheat. The Plant Pathology Journal. 35: 11-18. PMID 30828275 DOI: 10.5423/PPJ.OA.03.2018.0038   
2019 Severinova E, Alikunju S, Deng W, Dhawan P, Sayed N, Sayed D. Glucocorticoid Receptor-Binding and Transcriptome Signature in Cardiomyocytes. Journal of the American Heart Association. 8: e011484. PMID 30866692 DOI: 10.1161/JAHA.118.011484   
2019 Sahu J, Panda D, Baruah G, Patar L, Sen P, Borah BK, Modi MK. Revealing shared differential co-expression profiles in rice infected by virus from reoviridae and sequiviridae group. Gene. PMID 30825599 DOI: 10.1016/j.gene.2019.02.063   
2019 He RZ, Luo DX, Mo YY. Emerging roles of lncRNAs in the post-transcriptional regulation in cancer. Genes & Diseases. 6: 6-15. PMID 30906827 DOI: 10.1016/j.gendis.2019.01.003   
2019 Yu F, Wang H, Wang L, Li W, Lu L. Identification of a potential transcriptional regulator encoded by grass carp reovirus. Archives of Virology. PMID 30877452 DOI: 10.1007/s00705-019-04204-1   
2019 Monczor F, Chatzopoulou A, Zappia CD, Houtman R, Meijer OC, Fitzsimons CP. A Model of Glucocorticoid Receptor Interaction With Coregulators Predicts Transcriptional Regulation of Target Genes. Frontiers in Pharmacology. 10: 214. PMID 30930776 DOI: 10.3389/fphar.2019.00214   
2019 Calixto CPG, Tzioutziou NA, James AB, Hornyik C, Guo W, Zhang R, Nimmo HG, Brown JWS. Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs. Frontiers in Plant Science. 10: 235. PMID 30891054 DOI: 10.3389/fpls.2019.00235   
2019 Cooke M, Casado-Medrano V, Ann J, Lee J, Blumberg PM, Abba MC, Kazanietz MG. Differential Regulation of Gene Expression in Lung Cancer Cells by Diacyglycerol-Lactones and a Phorbol Ester Via Selective Activation of Protein Kinase C Isozymes. Scientific Reports. 9: 6041. PMID 30988374 DOI: 10.1038/s41598-019-42581-4   
2019 Mack KL, Phifer-Rixey M, Harr B, Nachman MW. Gene Expression Networks Across Multiple Tissues Are Associated with Rates of Molecular Evolution in Wild House Mice. Genes. 10. PMID 30889893 DOI: 10.3390/genes10030225   
2019 Kaval KG, Gebbie M, Goodson JR, Cruz MR, Winkler WC, Garsin DA. Ethanolamine Utilization and Bacterial Microcompartment (BMC) Formation are Subject to Carbon Catabolite Repression (CCR). Journal of Bacteriology. PMID 30833356 DOI: 10.1128/JB.00703-18   
2019 Jo SS, Choi SS. Enrichment of rare alleles within epigenetic chromatin marks in the first intron. Genomics & Informatics. 17: e9. PMID 30929410 DOI: 10.5808/GI.2019.17.1.e9   
2019 Joseph JT, Poolakkalody NJ, Shah JM. Screening internal controls for expression analyses involving numerous treatments by combining statistical methods with reference gene selection tools. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 25: 289-301. PMID 30804650 DOI: 10.1007/s12298-018-0608-2   
2019 Guo X, Bai L, Li F, Huck W, Yang D. Branched DNA Architectures via PCR-based Assembly as Gene Compartment for Cell-free Gene Expression Reactions. Chembiochem : a European Journal of Chemical Biology. PMID 30938476 DOI: 10.1002/cbic.201900094   
2019 Koch L, Poyot T, Schnetterle M, Guillier S, Soulé E, Nolent F, Gorgé O, Neulat-Ripoll F, Valade E, Sebbane F, Biot F. Transcriptomic studies and assessment of Yersinia pestis reference genes in various conditions. Scientific Reports. 9: 2501. PMID 30792499 DOI: 10.1038/s41598-019-39072-x   
2019 Gan L, Chao Y, Su H, Ren Y, Yin S, Han L. Altered Promoter and G-Box Binding Factor for Gene Grown from Seeds after Spaceflight. International Journal of Molecular Sciences. 20. PMID 30901811 DOI: 10.3390/ijms20061398   
2019 Catizone AN, Good CR, Alexander KA, Berger SL, Sammons MA. Comparison of genotoxic versus nongenotoxic stabilization of p53 provides insight into parallel stress-responsive transcriptional networks. Cell Cycle (Georgetown, Tex.). 1-15. PMID 30966857 DOI: 10.1080/15384101.2019.1593643