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Gytis Dudas - Publications

Affiliations: 
University of Edinburgh, Edinburgh, Scotland, United Kingdom 
Area:
phylogenetics, virus evolution
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Dudas G, Batson J. Accumulated metagenomic studies reveal recent migration, whole genome evolution, and undiscovered diversity of orthomyxoviruses. Journal of Virology. 97: e0105623. PMID 37830816 DOI: 10.1128/jvi.01056-23  0.493
2022 Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C, Howden BP, Sintchenko V, Zuckerman NS, et al. Global disparities in SARS-CoV-2 genomic surveillance. Nature Communications. 13: 7003. PMID 36385137 DOI: 10.1038/s41467-022-33713-y  0.336
2022 Klitting R, Kafetzopoulou LE, Thiery W, Dudas G, Gryseels S, Kotamarthi A, Vrancken B, Gangavarapu K, Momoh M, Sandi JD, Goba A, Alhasan F, Grant DS, Okogbenin S, Ogbaini-Emovo E, et al. Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades. Nature Communications. 13: 5596. PMID 36167835 DOI: 10.1038/s41467-022-33112-3  0.478
2021 Dudas G, Hong SL, Potter BI, Calvignac-Spencer S, Niatou-Singa FS, Tombolomako TB, Fuh-Neba T, Vickos U, Ulrich M, Leendertz FH, Khan K, Huber C, Watts A, Olendraitė I, Snijder J, et al. Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions. Nature Communications. 12: 5769. PMID 34599175 DOI: 10.1038/s41467-021-26055-8  0.354
2021 Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxamn S, Suchard MA, Grubaugh ND, et al. Global disparities in SARS-CoV-2 genomic surveillance. Medrxiv : the Preprint Server For Health Sciences. PMID 34462754 DOI: 10.1101/2021.08.21.21262393  0.467
2021 Pirnay JP, Selhorst P, Hong SL, Cochez C, Potter B, Maes P, Petrillo M, Dudas G, Claes V, Van der Beken Y, Verbeken G, Degueldre J, Dellicour S, Cuypers L, T'Sas F, et al. Variant Analysis of SARS-CoV-2 Genomes from Belgian Military Personnel Engaged in Overseas Missions and Operations. Viruses. 13. PMID 34372565 DOI: 10.3390/v13071359  0.358
2021 Arze CA, Springer S, Dudas G, Patel S, Bhattacharyya A, Swaminathan H, Brugnara C, Delagrave S, Ong T, Kahvejian A, Echelard Y, Weinstein EG, Hajjar RJ, Andersen KG, Yozwiak NL. Global genome analysis reveals a vast and dynamic anellovirus landscape within the human virome. Cell Host & Microbe. PMID 34320399 DOI: 10.1016/j.chom.2021.07.001  0.357
2021 Batson J, Dudas G, Haas-Stapleton E, Kistler AL, Li LM, Logan P, Ratnasiri K, Retallack H. Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay. Elife. 10. PMID 33904402 DOI: 10.7554/eLife.68353  0.385
2020 Müller NF, Stolz U, Dudas G, Stadler T, Vaughan TG. Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses. Proceedings of the National Academy of Sciences of the United States of America. PMID 32631984 DOI: 10.1073/Pnas.1918304117  0.494
2019 Dudas G, Bedford T. The ability of single genes vs full genomes to resolve time and space in outbreak analysis. Bmc Evolutionary Biology. 19: 232. PMID 31878875 DOI: 10.1186/S12862-019-1567-0  0.461
2019 Müller NF, Dudas G, Stadler T. Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populations. Virus Evolution. 5: vez030. PMID 31428459 DOI: 10.1093/Ve/Vez030  0.322
2018 Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P. Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak. Nature Communications. 9: 2222. PMID 29884821 DOI: 10.1038/S41467-018-03763-2  0.645
2018 Dudas G, Carvalho LM, Rambaut A, Bedford T. Correction: MERS-CoV spillover at the camel-human interface. Elife. 7. PMID 29669683 DOI: 10.7554/Elife.37324  0.498
2018 Chu DKW, Hui KPY, Perera RAPM, Miguel E, Niemeyer D, Zhao J, Channappanavar R, Dudas G, Oladipo JO, Traoré A, Fassi-Fihri O, Ali A, Demissié GF, Muth D, Chan MCW, et al. MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity. Proceedings of the National Academy of Sciences of the United States of America. PMID 29507189 DOI: 10.1073/Pnas.1718769115  0.662
2018 Whitmer SLM, Ladner JT, Wiley MR, Patel K, Dudas G, Rambaut A, Sahr F, Prieto K, Shepard SS, Carmody E, Knust B, Naidoo D, Deen G, Formenty P, Nichol ST, et al. Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors. Cell Reports. 22: 1159-1168. PMID 29386105 DOI: 10.1016/J.Celrep.2018.01.008  0.66
2018 Dudas G, Carvalho LM, Rambaut A, Bedford T. MERS-CoV spillover at the camel-human interface. Elife. 7. PMID 29336306 DOI: 10.7554/Elife.31257  0.656
2018 Dudas G. E-104 Virus genomes reveal factors that spread and sustained the Ebola epidemic Jaids Journal of Acquired Immune Deficiency Syndromes. 77: 43. DOI: 10.1097/01.qai.0000532609.26906.45  0.427
2017 Langat P, Raghwani J, Dudas G, Bowden TA, Edwards S, Gall A, Bedford T, Rambaut A, Daniels R, Russell C, Pybus OG, McCauley J, Kellam P, Watson SJ. Genome-wide evolutionary dynamics of influenza B viruses on a global scale. Plos Pathogens. 13: e1006749. PMID 29284042 DOI: 10.1371/Journal.Ppat.1006749  0.69
2017 Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, et al. Genomic epidemiology reveals multiple introductions of Zika virus into the United States. Nature. PMID 28538723 DOI: 10.1038/Nature22400  0.678
2017 Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. PMID 28405027 DOI: 10.1038/Nature22040  0.681
2016 Arias A, Watson SJ, Asogun D, Tobin EA, Lu J, Phan MVT, Jah U, Wadoum REG, Meredith L, Thorne L, Caddy S, Tarawalie A, Langat P, Dudas G, Faria NR, et al. Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases. Virus Evolution. 2: vew016. PMID 28694998 DOI: 10.1093/Ve/Vew016  0.683
2016 Dudas G, Rambaut A. MERS-CoV recombination: implications about the reservoir and potential for adaptation. Virus Evolution. 2: vev023. PMID 27774293 DOI: 10.1093/Ve/Vev023  0.604
2016 Holmes EC, Dudas G, Rambaut A, Andersen KG. The evolution of Ebola virus: Insights from the 2013-2016 epidemic. Nature. 538: 193-200. PMID 27734858 DOI: 10.1038/Nature19790  0.716
2016 Whitmer SL, Albariño C, Shepard SS, Dudas G, Sheth M, Brown SC, Cannon D, Erickson BR, Gibbons A, Schuh A, Sealy T, Ervin E, Frace M, Uyeki TM, Nichol ST, et al. Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences. The Journal of Infectious Diseases. PMID 27521366 DOI: 10.1093/Infdis/Jiw177  0.488
2016 Rambaut A, Dudas G, de Carvalho LM, Park DJ, Yozwiak NL, Holmes EC, Andersen KG. Comment on "Mutation rate and genotype variation of Ebola virus from Mali case sequences". Science (New York, N.Y.). 353: 658. PMID 27516592 DOI: 10.1126/Science.Aaf3823  0.607
2016 Lewis NS, Russell CA, Langat P, Anderson TK, Berger K, Bielejec F, Burke DF, Dudas G, Fonville JM, Fouchier RA, Kellam P, Koel BF, Lemey P, Nguyen T, Nuansrichy B, et al. The global antigenic diversity of swine influenza A viruses. Elife. 5. PMID 27113719 DOI: 10.7554/Elife.12217  0.555
2016 Quick J, Loman NJ, Duraffour S, Simpson JT, Severi E, Cowley L, Bore JA, Koundouno R, Dudas G, Mikhail A, Ouédraogo N, Afrough B, Bah A, Baum JH, Becker-Ziaja B, et al. Real-time, portable genome sequencing for Ebola surveillance. Nature. PMID 26840485 DOI: 10.1038/Nature16996  0.633
2016 Lewis NS, Russell CA, Langat P, Anderson TK, Berger K, Bielejec F, Burke DF, Dudas G, Fonville JM, Fouchier RA, Kellam P, Koel BF, Lemey P, Nguyen T, Nuansrichy B, et al. Author response: The global antigenic diversity of swine influenza A viruses Elife. DOI: 10.7554/Elife.12217.019  0.483
2015 Ladner JT, Wiley MR, Mate S, Dudas G, Prieto K, Lovett S, Nagle ER, Beitzel B, Gilbert ML, Fakoli L, Diclaro JW, Schoepp RJ, Fair J, Kuhn JH, Hensley LE, et al. Evolution and Spread of Ebola Virus in Liberia, 2014-2015. Cell Host & Microbe. 18: 659-669. PMID 26651942 DOI: 10.1016/J.Chom.2015.11.008  0.71
2015 Park DJ, Dudas G, Wohl S, Goba A, Whitmer SL, Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, et al. Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone. Cell. 161: 1516-26. PMID 26091036 DOI: 10.1016/J.Cell.2015.06.007  0.719
2015 Carroll MW, Matthews DA, Hiscox JA, Elmore MJ, Pollakis G, Rambaut A, Hewson R, García-Dorival I, Bore JA, Koundouno R, Abdellati S, Afrough B, Aiyepada J, Akhilomen P, Asogun D, ... ... Dudas G, et al. Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa. Nature. PMID 26083749 DOI: 10.1038/Nature14594  0.72
2015 Dudas G, Obbard DJ. Are arthropods at the heart of virus evolution? Elife. 4. PMID 25751043 DOI: 10.7554/Elife.06837  0.505
2015 Dudas G, Bedford T, Lycett S, Rambaut A. Reassortment between influenza B lineages and the emergence of a coadapted PB1-PB2-HA gene complex. Molecular Biology and Evolution. 32: 162-72. PMID 25323575 DOI: 10.1093/Molbev/Msu287  0.623
2015 Dudas G, Bedford T, Lycett S, Rambaut A. Reassortment between Influenza B Lineages and the Emergence of a Coadapted PB1-PB2-HA Gene Complex Molecular Biology and Evolution. 32: 162-172. DOI: 10.1093/molbev/msu287  0.52
2014 Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, Jalloh S, Momoh M, Fullah M, Dudas G, Wohl S, Moses LM, Yozwiak NL, Winnicki S, Matranga CB, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science (New York, N.Y.). 345: 1369-72. PMID 25214632 DOI: 10.1126/Science.1259657  0.716
2014 Obbard DJ, Dudas G. The genetics of host-virus coevolution in invertebrates. Current Opinion in Virology. 8: 73-8. PMID 25063907 DOI: 10.1016/J.Coviro.2014.07.002  0.537
2014 Dudas G, Rambaut A. Phylogenetic Analysis of Guinea 2014 EBOV Ebolavirus Outbreak. Plos Currents. 6. PMID 24860690 DOI: 10.1371/Currents.Outbreaks.84Eefe5Ce43Ec9Dc0Bf0670F7B8B417D  0.633
2014 Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ, Rambaut A. Integrating influenza antigenic dynamics with molecular evolution. Elife. 3: e01914. PMID 24497547 DOI: 10.7554/Elife.01914  0.566
2013 Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ, Rambaut A. Author response: Integrating influenza antigenic dynamics with molecular evolution Elife. DOI: 10.7554/Elife.01914.025  0.557
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