Mikko Karttunen, PhD - Publications

Affiliations: 
Physics and Astronomy The University of Western Ontario (Canada) 
 Chemistry The University of Western Ontario (Canada) 
Area:
soft matter physics, biological physics, computational physics, condensed matter physics
Website:
https://www.softsimu.net/mikko/

22/172 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Alcanzare MM, Karttunen M, Ala-Nissila T. Propulsion and controlled steering of magnetic nanohelices. Soft Matter. PMID 30681686 DOI: 10.1039/C8Sm00037A  0.421
2017 Alcanzare MM, Thakore V, Ollila ST, Karttunen M, Ala-Nissila T. Controlled propulsion and separation of helical particles at the nanoscale. Soft Matter. PMID 28225092 DOI: 10.1039/C6Sm02437H  0.424
2014 Liu B, Hoopes MI, Karttunen M. Molecular dynamics simulations of DPPC/CTAB monolayers at the air/water interface. The Journal of Physical Chemistry. B. 118: 11723-37. PMID 25222268 DOI: 10.1021/Jp5050892  0.733
2014 Ollila ST, Denniston C, Karttunen M, Ala-Nissila T. Biopolymer filtration in corrugated nanochannels. Physical Review Letters. 112: 118301. PMID 24702423 DOI: 10.1103/Physrevlett.112.118301  0.407
2014 Carter KA, Shao S, Hoopes MI, Luo D, Ahsan B, Grigoryants VM, Song W, Huang H, Zhang G, Pandey RK, Geng J, Pfeifer BA, Scholes CP, Ortega J, Karttunen M, et al. Porphyrin-phospholipid liposomes permeabilized by near-infrared light. Nature Communications. 5: 3546. PMID 24699423 DOI: 10.1038/Ncomms4546  0.695
2014 Choi Y, Attwood SJ, Hoopes MI, Drolle E, Karttunen M, Leonenko Z. Melatonin directly interacts with cholesterol and alleviates cholesterol effects in dipalmitoylphosphatidylcholine monolayers. Soft Matter. 10: 206-13. PMID 24651707 DOI: 10.1039/C3Sm52064A  0.717
2013 Faghihi N, Provatas N, Elder KR, Grant M, Karttunen M. Phase-field-crystal model for magnetocrystalline interactions in isotropic ferromagnetic solids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 032407. PMID 24125276 DOI: 10.1103/Physreve.88.032407  0.421
2011 Dias CL, Karttunen M, Chan HS. Hydrophobic interactions in the formation of secondary structures in small peptides. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 84: 041931. PMID 22181199 DOI: 10.1103/Physreve.84.041931  0.68
2011 Dias CL, Hynninen T, Ala-Nissila T, Foster AS, Karttunen M. Hydrophobicity within the three-dimensional Mercedes-Benz model: potential of mean force. The Journal of Chemical Physics. 134: 065106. PMID 21322739 DOI: 10.1063/1.3537734  0.708
2011 Ollila ST, Denniston C, Karttunen M, Ala-Nissila T. Fluctuating lattice-Boltzmann model for complex fluids. The Journal of Chemical Physics. 134: 064902. PMID 21322729 DOI: 10.1063/1.3544360  0.471
2010 Hynninen T, Heinonen V, Dias CL, Karttunen M, Foster AS, Ala-Nissila T. Cutting ice: nanowire regelation. Physical Review Letters. 105: 086102. PMID 20868115 DOI: 10.1103/Physrevlett.105.086102  0.678
2010 Wong-ekkabut J, Miettinen MS, Dias C, Karttunen M. Static charges cannot drive a continuous flow of water molecules through a carbon nanotube. Nature Nanotechnology. 5: 555-7. PMID 20622865 DOI: 10.1038/nnano.2010.152  0.605
2010 Dias CL, Ala-Nissila T, Wong-ekkabut J, Vattulainen I, Grant M, Karttunen M. The hydrophobic effect and its role in cold denaturation. Cryobiology. 60: 91-9. PMID 19616532 DOI: 10.1016/J.Cryobiol.2009.07.005  0.706
2009 Dias CL, Ala-Nissila T, Grant M, Karttunen M. Three-dimensional "Mercedes-Benz" model for water. The Journal of Chemical Physics. 131: 054505. PMID 19673572 DOI: 10.1063/1.3183935  0.715
2009 Sammalkorpi M, Karttunen M, Haataja M. Ionic Surfactant Aggregates in Saline Solutions : Sodium Dodecyl Sulfate (SDS) in the Presence of Excess Sodium Chloride (NaCl) or Calcium Chloride (CaCl2) Journal of Physical Chemistry B. 113: 5863-5870. PMID 19344100 DOI: 10.1021/Jp901228V  0.569
2009 Karttunen M, Haataja MP, Säily M, Vattulainen I, Holopainen JM. Lipid domain morphologies in phosphatidylcholine-ceramide monolayers. Langmuir : the Acs Journal of Surfaces and Colloids. 25: 4595-600. PMID 19249826 DOI: 10.1021/La803377S  0.567
2008 Luo K, Ollila ST, Huopaniemi I, Ala-Nissila T, Pomorski P, Karttunen M, Ying SC, Bhattacharya A. Dynamical scaling exponents for polymer translocation through a nanopore. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 050901. PMID 19113086 DOI: 10.1103/Physreve.78.050901  0.387
2008 Sammalkorpi M, Karttunen M, Haataja MP. Micelle fission through surface instability and formation of an interdigitating stalk. Journal of the American Chemical Society. 130: 17977-17980. PMID 19053186 DOI: 10.1021/Ja8077413  0.584
2008 Dias CL, Ala-Nissila T, Karttunen M, Vattulainen I, Grant M. Microscopic mechanism for cold denaturation. Physical Review Letters. 100: 118101. PMID 18517830 DOI: 10.1103/Physrevlett.100.118101  0.726
2007 Sammalkorpi M, Karttunen M, Haataja M. Structural Properties of Ionic Detergent Aggregates: A Large-Scale Molecular Dynamics Study of Sodium Dodecyl Sulfate Journal of Physical Chemistry B. 111: 11722-11733. PMID 17877384 DOI: 10.1021/Jp072587A  0.599
2006 Patra M, Salonen E, Terama E, Vattulainen I, Faller R, Lee BW, Holopainen J, Karttunen M. Under the influence of alcohol: the effect of ethanol and methanol on lipid bilayers. Biophysical Journal. 90: 1121-35. PMID 16326895 DOI: 10.1529/Biophysj.105.062364  0.51
2002 Karttunen M, Elder KR, Tarlie MB, Grant M. Instabilities and resistance fluctuations in thin accelerated superconducting rings. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 026115. PMID 12241245 DOI: 10.1103/Physreve.66.026115  0.424
Low-probability matches (unlikely to be authored by this person)
2009 Róg T, Murzyn K, Milhaud J, Karttunen M, Pasenkiewicz-Gierula M. Water isotope effect on the phosphatidylcholine bilayer properties: a molecular dynamics simulation study. The Journal of Physical Chemistry. B. 113: 2378-87. PMID 19199693 DOI: 10.1021/jp8048235  0.297
2011 Stepniewski M, Pasenkiewicz-Gierula M, Róg T, Danne R, Orlowski A, Karttunen M, Urtti A, Yliperttula M, Vuorimaa E, Bunker A. Study of PEGylated lipid layers as a model for PEGylated liposome surfaces: molecular dynamics simulation and Langmuir monolayer studies. Langmuir : the Acs Journal of Surfaces and Colloids. 27: 7788-98. PMID 21604684 DOI: 10.1021/la200003n  0.289
2006 Aittoniemi J, Niemelä PS, Hyvönen MT, Karttunen M, Vattulainen I. Insight into the putative specific interactions between cholesterol, sphingomyelin, and palmitoyl-oleoyl phosphatidylcholine. Biophysical Journal. 92: 1125-37. PMID 17114220 DOI: 10.1529/biophysj.106.088427  0.283
2007 Murtola T, Falck E, Karttunen M, Vattulainen I. Coarse-grained model for phospholipid/cholesterol bilayer employing inverse Monte Carlo with thermodynamic constraints. The Journal of Chemical Physics. 126: 075101. PMID 17328634 DOI: 10.1063/1.2646614  0.276
2010 Hall A, Róg T, Karttunen M, Vattulainen I. Role of glycolipids in lipid rafts: a view through atomistic molecular dynamics simulations with galactosylceramide. The Journal of Physical Chemistry. B. 114: 7797-807. PMID 20496924 DOI: 10.1021/jp912175d  0.271
2004 Gurtovenko AA, Patra M, Karttunen M, Vattulainen I. Cationic DMPC/DMTAP lipid bilayers: molecular dynamics study. Biophysical Journal. 86: 3461-72. PMID 15189847 DOI: 10.1529/biophysj.103.038760  0.267
2008 Zhao W, Róg T, Gurtovenko AA, Vattulainen I, Karttunen M. Role of phosphatidylglycerols in the stability of bacterial membranes. Biochimie. 90: 930-8. PMID 18373983 DOI: 10.1016/j.biochi.2008.02.025  0.267
2006 Zhao W, Róg T, Gurtovenko AA, Vattulainen I, Karttunen M. Atomic-scale structure and electrostatics of anionic palmitoyloleoylphosphatidylglycerol lipid bilayers with Na+ counterions. Biophysical Journal. 92: 1114-24. PMID 17114222 DOI: 10.1529/biophysj.106.086272  0.266
2012 Titantah JT, Karttunen M. Long-time correlations and hydrophobe-modified hydrogen-bonding dynamics in hydrophobic hydration. Journal of the American Chemical Society. 134: 9362-8. PMID 22582830 DOI: 10.1021/ja301908a  0.266
2021 Reyes-Figueroa AD, Karttunen M, Ruiz-Suárez JC. Cholesterol sequestration by xenon nano bubbles leads to lipid raft destabilization. Soft Matter. 16: 9655-9661. PMID 33078812 DOI: 10.1039/d0sm01256d  0.262
2020 Ardalan A, Sowlati-Hashjin S, Uwumarenogie SO, Fish M, Mitchell J, Karttunen M, Smith MD, Jelokhani-Niaraki M. Functional Oligomeric Forms of Uncoupling Protein 2: Strong Evidence for Asymmetry in Protein and Lipid Bilayer Systems. The Journal of Physical Chemistry. B. PMID 33373220 DOI: 10.1021/acs.jpcb.0c09422  0.262
2010 Murzyn K, Zhao W, Karttunen M, Kurdziel M, Róg T. Dynamics of water at membrane surfaces: Effect of headgroup structure. Biointerphases. 1: 98-105. PMID 20408622 DOI: 10.1116/1.2354573  0.26
2010 Vuorela T, Catte A, Niemelä PS, Hall A, Hyvönen MT, Marrink SJ, Karttunen M, Vattulainen I. Role of lipids in spheroidal high density lipoproteins. Plos Computational Biology. 6: e1000964. PMID 21060857 DOI: 10.1371/Journal.Pcbi.1000964  0.258
2018 Gurtovenko AA, Mukhamadiarov EI, Kostritskii AY, Karttunen M. Phospholipid-Cellulose Interactions: Insight from Atomistic Computer Simulations for Understanding the Impact of Cellulose-Based Materials on Plasma Membranes. The Journal of Physical Chemistry. B. 122: 9973-9981. PMID 30295483 DOI: 10.1021/acs.jpcb.8b07765  0.256
2009 Murtola T, Karttunen M, Vattulainen I. Systematic coarse graining from structure using internal states: application to phospholipid/cholesterol bilayer. The Journal of Chemical Physics. 131: 055101. PMID 19673586 DOI: 10.1063/1.3167405  0.255
2006 Stimson LM, Vattulainen I, Róg T, Karttunen M. Exploring the effect of xenon on biomembranes. Cellular & Molecular Biology Letters. 10: 563-9. PMID 16341267  0.252
2006 Falck E, Hautala JT, Karttunen M, Kinnunen PK, Patra M, Saaren-Seppälä H, Vattulainen I, Wiedmer SK, Holopainen JM. Interaction of fusidic acid with lipid membranes: Implications to the mechanism of antibiotic activity. Biophysical Journal. 91: 1787-99. PMID 16782792 DOI: 10.1529/biophysj.106.084525  0.252
2019 de Souza RM, Ratochinski RH, Karttunen M, Dias LG. Self-Assembly of Phosphocholine Derivatives Using the ELBA Coarse-Grained Model: Micelles, Bicelles, and Reverse Micelles. Journal of Chemical Information and Modeling. 60: 522-536. PMID 31714768 DOI: 10.1021/acs.jcim.9b00790  0.249
2004 Murtola T, Falck E, Patra M, Karttunen M, Vattulainen I. Coarse-grained model for phospholipid/cholesterol bilayer. The Journal of Chemical Physics. 121: 9156-65. PMID 15527384 DOI: 10.1063/1.1803537  0.248
2015 Bereau T, Bennett WF, Pfaendtner J, Deserno M, Karttunen M. Folding and insertion thermodynamics of the transmembrane WALP peptide. The Journal of Chemical Physics. 143: 243127. PMID 26723612 DOI: 10.1063/1.4935487  0.247
2013 Pannuzzo M, Milardi D, Raudino A, Karttunen M, Rosa CL. Analytical model and multiscale simulations of Aβ peptide aggregation in lipid membranes: towards a unifying description of conformational transitions, oligomerization and membrane damage Physical Chemistry Chemical Physics. 15: 8940-8951. PMID 23588697 DOI: 10.1039/C3Cp44539A  0.247
2022 Soltani S, Sowlati-Hashjin S, Tetsassi Feugmo CG, Karttunen M. Free Energy and Stacking of Eumelanin Nanoaggregates. The Journal of Physical Chemistry. B. 126: 1805-1818. PMID 35175060 DOI: 10.1021/acs.jpcb.1c07884  0.242
2014 Pourmousa M, Róg T, Mikkeli R, Vattulainen L, Solanko LM, Wüstner D, List NH, Kongsted J, Karttunen M. Dehydroergosterol as an analogue for cholesterol: why it mimics cholesterol so well-or does it? The Journal of Physical Chemistry. B. 118: 7345-57. PMID 24893063 DOI: 10.1021/Jp406883K  0.239
2022 Lukasheva N, Tolmachev D, Martinez-Seara H, Karttunen M. Changes in the Local Conformational States Caused by Simple Na and K Ions in Polyelectrolyte Simulations: Comparison of Seven Force Fields with and without NBFIX and ECC Corrections. Polymers. 14. PMID 35054659 DOI: 10.3390/polym14020252  0.238
2021 Federizon J, Feugmo CGT, Huang WC, He X, Miura K, Razi A, Ortega J, Karttunen M, Lovell JF. Experimental and Computational Observations of Immunogenic Cobalt Porphyrin Lipid Bilayers: Nanodomain-Enhanced Antigen Association. Pharmaceutics. 13. PMID 33466686 DOI: 10.3390/pharmaceutics13010098  0.235
2019 Nalakarn P, Boonnoy P, Nisoh N, Karttunen M, Wong-Ekkabut J. Dependence of fullerene aggregation on lipid saturation due to a balance between entropy and enthalpy. Scientific Reports. 9: 1037. PMID 30705323 DOI: 10.1038/s41598-018-37659-4  0.235
2020 Nisoh N, Jarerattanachat V, Karttunen M, Wong-Ekkabut J. Formation of aggregates, icosahedral structures and percolation clusters of fullerenes in lipids bilayers: The key role of lipid saturation. Biochimica Et Biophysica Acta. Biomembranes. 1862: 183328. PMID 32343957 DOI: 10.1016/j.bbamem.2020.183328  0.234
2004 Falck E, Patra M, Karttunen M, Hyvönen MT, Vattulainen I. Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers. Biophysical Journal. 87: 1076-91. PMID 15298912 DOI: 10.1529/biophysj.104.041368  0.233
2007 Niemelä PS, Ollila S, Hyvönen MT, Karttunen M, Vattulainen I. Assessing the nature of lipid raft membranes. Plos Computational Biology. 3: e34. PMID 17319738 DOI: 10.1371/journal.pcbi.0030034  0.233
2007 Martinez-Seara H, Róg T, Pasenkiewicz-Gierula M, Vattulainen I, Karttunen M, Reigada R. Effect of double bond position on lipid bilayer properties: insight through atomistic simulations. The Journal of Physical Chemistry. B. 111: 11162-8. PMID 17760435 DOI: 10.1021/jp071894d  0.232
2007 Repáková J, Holopainen JM, Karttunen M, Vattulainen I. Influence of pyrene-labeling on fluid lipid membranes. The Journal of Physical Chemistry. B. 110: 15403-10. PMID 16884261 DOI: 10.1021/jp061300r  0.231
2004 Falck E, Patra M, Karttunen M, Hyvönen MT, Vattulainen I. Impact of cholesterol on voids in phospholipid membranes. The Journal of Chemical Physics. 121: 12676-89. PMID 15606294 DOI: 10.1063/1.1824033  0.231
2007 Gurtovenko AA, Miettinen M, Karttunen M, Vattulainen I. Effect of monovalent salt on cationic lipid membranes as revealed by molecular dynamics simulations. The Journal of Physical Chemistry. B. 109: 21126-34. PMID 16853736 DOI: 10.1021/jp053667m  0.23
2006 Murtola T, Róg T, Falck E, Karttunen M, Vattulainen I. Transient ordered domains in single-component phospholipid bilayers. Physical Review Letters. 97: 238102. PMID 17280250 DOI: 10.1103/PhysRevLett.97.238102  0.23
2014 Xie JY, Ding GH, Karttunen M. Molecular dynamics simulations of lipid membranes with lateral force: rupture and dynamic properties. Biochimica Et Biophysica Acta. 1838: 994-1002. PMID 24374317 DOI: 10.1016/j.bbamem.2013.12.011  0.229
2015 Boonnoy P, Jarerattanachat V, Karttunen M, Wong-Ekkabut J. Bilayer Deformation, Pores, and Micellation Induced by Oxidized Lipids. The Journal of Physical Chemistry Letters. 6: 4884-8. PMID 26673194 DOI: 10.1021/acs.jpclett.5b02405  0.228
2008 Terama E, Ollila OH, Salonen E, Rowat AC, Trandum C, Westh P, Patra M, Karttunen M, Vattulainen I. Influence of ethanol on lipid membranes: from lateral pressure profiles to dynamics and partitioning. The Journal of Physical Chemistry. B. 112: 4131-9. PMID 18341314 DOI: 10.1021/jp0750811  0.226
2012 Cino EA, Choy WY, Karttunen M. Comparison of Secondary Structure Formation Using 10 Different Force Fields in Microsecond Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 8: 2725-2740. PMID 22904695 DOI: 10.1021/ct300323g  0.224
2021 Kitjanon J, Khuntawee W, Phongphanphanee S, Sutthibutpong T, Chattham N, Karttunen M, Wong-Ekkabut J. Nanocomposite of Fullerenes and Natural Rubbers: MARTINI Force Field Molecular Dynamics Simulations. Polymers. 13. PMID 34833344 DOI: 10.3390/polym13224044  0.223
2008 Martinez-Seara H, Róg T, Pasenkiewicz-Gierula M, Vattulainen I, Karttunen M, Reigada R. Interplay of unsaturated phospholipids and cholesterol in membranes: effect of the double-bond position. Biophysical Journal. 95: 3295-305. PMID 18621818 DOI: 10.1529/biophysj.108.138123  0.222
2022 Chávez-García C, Hénin J, Karttunen M. Multiscale Computational Study of the Conformation of the Full-Length Intrinsically Disordered Protein MeCP2. Journal of Chemical Information and Modeling. 62: 958-970. PMID 35130441 DOI: 10.1021/acs.jcim.1c01354  0.222
2008 Róg T, Stimson LM, Pasenkiewicz-Gierula M, Vattulainen I, Karttunen M. Replacing the cholesterol hydroxyl group with the ketone group facilitates sterol flip-flop and promotes membrane fluidity. The Journal of Physical Chemistry. B. 112: 1946-52. PMID 18217743 DOI: 10.1021/jp075078h  0.22
2008 Róg T, Pasenkiewicz-Gierula M, Vattulainen I, Karttunen M. Ordering effects of cholesterol and its analogues. Biochimica Et Biophysica Acta. 1788: 97-121. PMID 18823938 DOI: 10.1016/j.bbamem.2008.08.022  0.22
2013 Jarerattanachat V, Karttunen M, Wong-Ekkabut J. Molecular dynamics study of oxidized lipid bilayers in NaCl solution. The Journal of Physical Chemistry. B. 117: 8490-501. PMID 23800115 DOI: 10.1021/jp4040612  0.218
2013 Titantah JT, Karttunen M. Water dynamics: relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity. Scientific Reports. 3: 2991. PMID 24141934 DOI: 10.1038/srep02991  0.217
2009 Miettinen MS, Gurtovenko AA, Vattulainen I, Karttunen M. Ion dynamics in cationic lipid bilayer systems in saline solutions. The Journal of Physical Chemistry. B. 113: 9226-34. PMID 19534449 DOI: 10.1021/jp810233q  0.216
2018 Khuntawee W, Karttunen M, Wong-Ekkabut J. A molecular dynamics study of conformations of beta-cyclodextrin and its eight derivatives in four different solvents. Physical Chemistry Chemical Physics : Pccp. 19: 24219-24229. PMID 28848954 DOI: 10.1039/c7cp04009a  0.216
2009 Róg T, Vattulainen I, Jansen M, Ikonen E, Karttunen M. Comparison of cholesterol and its direct precursors along the biosynthetic pathway: effects of cholesterol, desmosterol and 7-dehydrocholesterol on saturated and unsaturated lipid bilayers. The Journal of Chemical Physics. 129: 154508. PMID 19045210 DOI: 10.1063/1.2996296  0.215
2008 Róg T, Murzyn K, Karttunen M, Pasenkiewicz-Gierula M. Nonpolar interactions between trans-membrane helical EGF peptide and phosphatidylcholines, sphingomyelins and cholesterol. Molecular dynamics simulation studies. Journal of Peptide Science : An Official Publication of the European Peptide Society. 14: 374-82. PMID 17985365 DOI: 10.1002/psc.936  0.215
2009 Martinez-Seara H, Róg T, Karttunen M, Vattulainen I, Reigada R. Why is the sn-2 chain of monounsaturated glycerophospholipids usually unsaturated whereas the sn-1 chain is saturated? Studies of 1-stearoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (SOPC) and 1-oleoyl-2-stearoyl-sn-glycero-3-phosphatidylcholine (OSPC) membranes with and without cholesterol. The Journal of Physical Chemistry. B. 113: 8347-56. PMID 19469492 DOI: 10.1021/jp902131b  0.214
2012 Wong-Ekkabut J, Karttunen M. Assessment of Common Simulation Protocols for Simulations of Nanopores, Membrane Proteins, and Channels. Journal of Chemical Theory and Computation. 8: 2905-11. PMID 26592129 DOI: 10.1021/ct3001359  0.211
2007 Falck E, Róg T, Karttunen M, Vattulainen I. Lateral diffusion in lipid membranes through collective flows. Journal of the American Chemical Society. 130: 44-5. PMID 18078342 DOI: 10.1021/ja7103558  0.211
2005 Vainio S, Jansen M, Koivusalo M, Róg T, Karttunen M, Vattulainen I, Ikonen E. Significance of sterol structural specificity. Desmosterol cannot replace cholesterol in lipid rafts. The Journal of Biological Chemistry. 281: 348-55. PMID 16249181 DOI: 10.1074/jbc.M509530200  0.211
2007 Gurtovenko AA, Lyulin SV, Karttunen M, Vattulainen I. Molecular dynamics study of charged dendrimers in salt-free solution: effect of counterions. The Journal of Chemical Physics. 124: 94904. PMID 16526873 DOI: 10.1063/1.2166396  0.209
2011 Zhao W, Gurtovenko AA, Vattulainen I, Karttunen M. Cationic dimyristoylphosphatidylcholine and dioleoyloxytrimethylammonium propane lipid bilayers: atomistic insight for structure and dynamics. The Journal of Physical Chemistry. B. 116: 269-76. PMID 22117693 DOI: 10.1021/jp210619q  0.209
2015 Wong-Ekkabut J, Karttunen M. Molecular dynamics simulation of water permeation through the alpha-hemolysin channel. Journal of Biological Physics. 42: 133-46. PMID 26264478 DOI: 10.1007/s10867-015-9396-x  0.209
2012 Cino EA, Karttunen M, Choy WY. Effects of molecular crowding on the dynamics of intrinsically disordered proteins. Plos One. 7: e49876. PMID 23189168 DOI: 10.1371/journal.pone.0049876  0.209
2011 Stepniewski M, Bunker A, Pasenkiewicz-Gierula M, Karttunen M, Róg T. Effects of the lipid bilayer phase state on the water membrane interface. The Journal of Physical Chemistry. B. 114: 11784-92. PMID 20726538 DOI: 10.1021/jp104739a  0.209
2016 Zhang L, Bennet D, Zheng T, Ouyang P, Ouyang X, Qiu X, Luo A, Karttunen M, Chen P. Effect of Cholesterol on Cellular Uptake of Cancer Drugs Pirarubicin and Ellipticine. The Journal of Physical Chemistry. B. PMID 26937690 DOI: 10.1021/acs.jpcb.5b12337  0.208
2021 Boonnoy P, Jarerattanachat V, Karttunen M, Wong-Ekkabut J. Role of cholesterol flip-flop in oxidized lipid bilayers. Biophysical Journal. 120: 4525-4535. PMID 34478697 DOI: 10.1016/j.bpj.2021.08.036  0.208
2008 Catte A, Patterson JC, Bashtovyy D, Jones MK, Gu F, Li L, Rampioni A, Sengupta D, Vuorela T, Niemelä P, Karttunen M, Marrink SJ, Vattulainen I, Segrest JP. Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations. Biophysical Journal. 94: 2306-19. PMID 18065479 DOI: 10.1529/biophysj.107.115857  0.208
2018 Boonnoy P, Karttunen M, Wong-Ekkabut J. Alpha-tocopherol inhibits pore formation in oxidized bilayers. Physical Chemistry Chemical Physics : Pccp. 19: 5699-5704. PMID 28138670 DOI: 10.1039/c6cp08051k  0.208
2020 Sowlati-Hashjin S, Carbone P, Karttunen M. Insights into the Polyhexamethylene Biguanide (PHMB) Mechanism of Action on Bacterial Membrane and DNA: A Molecular Dynamics Study. The Journal of Physical Chemistry. B. 124: 4487-4497. PMID 32390430 DOI: 10.1021/acs.jpcb.0c02609  0.207
2018 Rodríguez-López T, Khalak Y, Karttunen M. Non-conformal coarse-grained potentials for water. The Journal of Chemical Physics. 147: 134108. PMID 28987109 DOI: 10.1063/1.4985914  0.207
2004 Patra M, Karttunen M. Systematic comparison of force fields for microscopic simulations of NaCl in aqueous solutions: diffusion, free energy of hydration, and structural properties. Journal of Computational Chemistry. 25: 678-89. PMID 14978711 DOI: 10.1002/jcc.10417  0.206
2007 Róg T, Vattulainen I, Bunker A, Karttunen M. Glycolipid membranes through atomistic simulations: effect of glucose and galactose head groups on lipid bilayer properties. The Journal of Physical Chemistry. B. 111: 10146-54. PMID 17676793 DOI: 10.1021/jp0730895  0.205
2008 Pöyry S, Róg T, Karttunen M, Vattulainen I. Significance of cholesterol methyl groups. The Journal of Physical Chemistry. B. 112: 2922-9. PMID 18278902 DOI: 10.1021/jp7100495  0.203
2022 de Souza RM, Romeu FC, Ribeiro MCC, Karttunen M, Dias LG. Osmotic Method for Calculating Surface Pressure of Monolayers in Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 18: 2042-2046. PMID 35254819 DOI: 10.1021/acs.jctc.2c00109  0.201
2013 Pourmousa M, Karttunen M. Early stages of interactions of cell-penetrating peptide penetratin with a DPPC bilayer. Chemistry and Physics of Lipids. 169: 85-94. PMID 23499547 DOI: 10.1016/j.chemphyslip.2013.02.011  0.201
2010 Pöyry S, Róg T, Karttunen M, Vattulainen I. Mitochondrial membranes with mono- and divalent salt: changes induced by salt ions on structure and dynamics. The Journal of Physical Chemistry. B. 113: 15513-21. PMID 19886603 DOI: 10.1021/jp905915m  0.2
2018 Göddeke H, Timachi MH, Hutter CAJ, Galazzo L, Seeger MA, Karttunen M, Bordignon E, Schäfer LV. Atomistic Mechanism of Large-Scale Conformational Transition in a Heterodimeric ABC Exporter. Journal of the American Chemical Society. 140: 4543-4551. PMID 29547697 DOI: 10.1021/jacs.7b12944  0.2
2010 Martinez-Seara H, Róg T, Karttunen M, Vattulainen I, Reigada R. Cholesterol induces specific spatial and orientational order in cholesterol/phospholipid membranes. Plos One. 5: e11162. PMID 20567600 DOI: 10.1371/journal.pone.0011162  0.2
2007 Samuli Ollila OH, Róg T, Karttunen M, Vattulainen I. Role of sterol type on lateral pressure profiles of lipid membranes affecting membrane protein functionality: Comparison between cholesterol, desmosterol, 7-dehydrocholesterol and ketosterol. Journal of Structural Biology. 159: 311-23. PMID 17369050 DOI: 10.1016/j.jsb.2007.01.012  0.2
2007 Róg T, Pasenkiewicz-Gierula M, Vattulainen I, Karttunen M. What happens if cholesterol is made smoother: importance of methyl substituents in cholesterol ring structure on phosphatidylcholine-sterol interaction. Biophysical Journal. 92: 3346-57. PMID 17293396 DOI: 10.1529/biophysj.106.095497  0.199
2021 Maglia de Souza R, Karttunen M, Ribeiro MCC. Fine-Tuning the Polarizable CL&Pol Force Field for the Deep Eutectic Solvent Ethaline. Journal of Chemical Information and Modeling. 61: 5938-5947. PMID 34797679 DOI: 10.1021/acs.jcim.1c01181  0.198
2018 Khalak Y, Baumeier B, Karttunen M. Improved general-purpose five-point model for water: TIP5P/2018. The Journal of Chemical Physics. 149: 224507. PMID 30553255 DOI: 10.1063/1.5070137  0.197
2009 Martinez-Seara H, Róg T, Karttunen M, Reigada R, Vattulainen I. Influence of cis double-bond parametrization on lipid membrane properties: how seemingly insignificant details in force-field change even qualitative trends. The Journal of Chemical Physics. 129: 105103. PMID 19044940 DOI: 10.1063/1.2976443  0.196
2019 Gurtovenko AA, Karttunen M. Controlled On-Off Switching of Tight-Binding Hydrogen Bonds between Model Cell Membranes and Acetylated Cellulose Surfaces. Langmuir : the Acs Journal of Surfaces and Colloids. 35: 13753-13760. PMID 31553618 DOI: 10.1021/acs.langmuir.9b02453  0.195
2021 Chang M, Wilson CJ, Karunatilleke NC, Moselhy MH, Karttunen M, Choy WY. Exploring the Conformational Landscape of the Neh4 and Neh5 Domains of Nrf2 Using Two Different Force Fields and Circular Dichroism. Journal of Chemical Theory and Computation. PMID 33861593 DOI: 10.1021/acs.jctc.0c01243  0.195
2013 Pourmousa M, Wong-ekkabut J, Patra M, Karttunen M. Molecular dynamic studies of transportan interacting with a DPPC lipid bilayer. The Journal of Physical Chemistry. B. 117: 230-41. PMID 23214935 DOI: 10.1021/jp310255r  0.195
2015 Titantah JT, Karttunen M. Hydrophobicity: effect of density and order on water's rotational slowing down. Soft Matter. 11: 7977-85. PMID 26327528 DOI: 10.1039/c5sm00930h  0.193
2012 Raudino A, Pannuzzo M, Karttunen M. Combined depletion and electrostatic forces in polymer-induced membrane adhesion: a theoretical model. The Journal of Chemical Physics. 136: 055101. PMID 22320763 DOI: 10.1063/1.3678836  0.191
2021 Gurtovenko AA, Karttunen M. How to control interactions of cellulose-based biomaterials with skin: the role of acidity in the contact area. Soft Matter. 17: 6507-6518. PMID 34100057 DOI: 10.1039/d1sm00608h  0.191
2022 Chávez-García C, Karttunen M. Highly Similar Sequence and Structure Yet Different Biophysical Behavior: A Computational Study of Two Triosephosphate Isomerases. Journal of Chemical Information and Modeling. 62: 668-677. PMID 35044757 DOI: 10.1021/acs.jcim.1c01501  0.19
2018 Liu B, Karttunen M. Lipopeptide daptomycin: Interactions with bacterial and phospholipid membranes, stability of membrane aggregates and micellation in solution. Biochimica Et Biophysica Acta. PMID 29627322 DOI: 10.1016/j.bbamem.2018.03.028  0.189
2021 Tolmachev D, Mamistvalov G, Lukasheva N, Larin S, Karttunen M. Effects of Amino Acid Side-Chain Length and Chemical Structure on Anionic Polyglutamic and Polyaspartic Acid Cellulose-Based Polyelectrolyte Brushes. Polymers. 13. PMID 34071693 DOI: 10.3390/polym13111789  0.189
2007 Nikunen P, Vattulainen I, Karttunen M. Reptational dynamics in dissipative particle dynamics simulations of polymer melts. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 75: 036713. PMID 17500832 DOI: 10.1103/PhysRevE.75.036713  0.188
2022 Nisoh N, Jarerattanachat V, Karttunen M, Wong-Ekkabut J. Fullerenes' Interactions with Plasma Membranes: Insight from the MD Simulations. Biomolecules. 12. PMID 35625567 DOI: 10.3390/biom12050639  0.187
2020 La Rosa C, Condorelli M, Compagnini G, Lolicato F, Milardi D, Do TN, Karttunen M, Pannuzzo M, Ramamoorthy A, Fraternali F, Collu F, Rezaei H, Strodel B, Raudino A. Symmetry-breaking transitions in the early steps of protein self-assembly. European Biophysics Journal : Ebj. PMID 32123956 DOI: 10.1007/S00249-020-01424-1  0.186
2011 St-Pierre JF, Karttunen M, Mousseau N, Róg T, Bunker A. Use of Umbrella Sampling to Calculate the Entrance/Exit Pathway for Z-Pro-Prolinal Inhibitor in Prolyl Oligopeptidase. Journal of Chemical Theory and Computation. 7: 1583-94. PMID 26596426 DOI: 10.1021/Ct1007058  0.186
2020 Sowlati-Hashjin S, Karttunen M, Matta CF. Manipulation of Diatomic Molecules with Oriented External Electric Fields: Linear Correlations in Atomic Properties Lead to Non-Linear Molecular Responses. The Journal of Physical Chemistry. A. PMID 32337997 DOI: 10.1021/acs.jpca.0c02569  0.185
2011 Cino EA, Wong-ekkabut J, Karttunen M, Choy WY. Microsecond molecular dynamics simulations of intrinsically disordered proteins involved in the oxidative stress response. Plos One. 6: e27371. PMID 22125611 DOI: 10.1371/journal.pone.0027371  0.182
2013 Cino EA, Choy WY, Karttunen M. Conformational biases of linear motifs. The Journal of Physical Chemistry. B. 117: 15943-57. PMID 24295074 DOI: 10.1021/jp407536p  0.181
2009 Róg T, Martinez-Seara H, Munck N, Oresic M, Karttunen M, Vattulainen I. Role of cardiolipins in the inner mitochondrial membrane: insight gained through atom-scale simulations. The Journal of Physical Chemistry. B. 113: 3413-22. PMID 19228006 DOI: 10.1021/jp8077369  0.181
2021 Batishcheva EV, Sokolova DN, Fedotova VS, Sokolova MP, Nikolaeva AL, Vakulyuk AY, Shakhbazova CY, Ribeiro MCC, Karttunen M, Smirnov MA. Strengthening Cellulose Nanopaper via Deep Eutectic Solvent and Ultrasound-Induced Surface Disordering of Nanofibers. Polymers. 14. PMID 35012101 DOI: 10.3390/polym14010078  0.18
2006 Rog T, Vattulainen I, Karttunen M. Modeling glycolipids: take one. Cellular & Molecular Biology Letters. 10: 625-30. PMID 16341271  0.179
2016 Cino EA, Choy WY, Karttunen M. Characterization of the Free State Ensemble of the CoRNR Box Motif by Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. 120: 1060-8. PMID 26794929 DOI: 10.1021/acs.jpcb.5b11565  0.179
2012 St-Pierre JF, Bunker A, Róg T, Karttunen M, Mousseau N. Molecular dynamics simulations of the bacterial ABC transporter SAV1866 in the closed form. The Journal of Physical Chemistry. B. 116: 2934-42. PMID 22339391 DOI: 10.1021/Jp209126C  0.176
2018 Boonnoy P, Karttunen M, Wong-Ekkabut J. Does α-Tocopherol Flip-Flop Help to Protect Membranes Against Oxidation? The Journal of Physical Chemistry. B. 122: 10362-10370. PMID 30354170 DOI: 10.1021/acs.jpcb.8b09064  0.175
2019 Parisi LR, Sowlati-Hashjin S, Berhane IA, Galster SL, Carter KA, Lovell JF, Chemler SR, Karttunen M, Atilla-Gokcumen GE. Membrane disruption by very long chain fatty acids during necroptosis. Acs Chemical Biology. PMID 31490656 DOI: 10.1021/Acschembio.9B00616  0.173
2020 Tolmachev DA, Boyko OS, Lukasheva NV, Martinez-Seara H, Karttunen M. Overbinding and Qualitative and Quantitative Changes Caused by Simple Na and K Ions in Polyelectrolyte Simulations: Comparison of Force Fields with and without NBFIX and ECC Corrections. Journal of Chemical Theory and Computation. 16: 677-687. PMID 31755710 DOI: 10.1021/acs.jctc.9b00813  0.173
2007 Aittoniemi J, Róg T, Niemelä P, Pasenkiewicz-Gierula M, Karttunen M, Vattulainen I. Tilt: major factor in sterols' ordering capability in membranes. The Journal of Physical Chemistry. B. 110: 25562-4. PMID 17181184 DOI: 10.1021/jp064931u  0.171
2019 Khuntawee W, Sutthibutpong T, Phongphanphanee S, Karttunen M, Wong-Ekkabut J. Molecular dynamics study of natural rubber-fullerene composites: connecting microscopic properties to macroscopic behavior. Physical Chemistry Chemical Physics : Pccp. 21: 19403-19413. PMID 31455965 DOI: 10.1039/c9cp03155c  0.171
2012 Kaszuba K, Róg T, Danne R, Canning P, Fülöp V, Juhász T, Szeltner Z, St. Pierre JF, García-Horsman A, Männistö PT, Karttunen M, Hokkanen J, Bunker A. Molecular dynamics, crystallography and mutagenesis studies on the substrate gating mechanism of prolyl oligopeptidase Biochimie. 94: 1398-1411. PMID 22484394 DOI: 10.1016/j.biochi.2012.03.012  0.17
2020 Tolmachev D, Lukasheva N, Mamistvalov G, Karttunen M. Influence of Calcium Binding on Conformations and Motions of Anionic Polyamino Acids. Effect of Side Chain Length. Polymers. 12. PMID 32503199 DOI: 10.3390/polym12061279  0.169
2021 Smirnov MA, Fedotova VS, Sokolova MP, Nikolaeva AL, Elokhovsky VY, Karttunen M. Polymerizable Choline- and Imidazolium-Based Ionic Liquids Reinforced with Bacterial Cellulose for 3D-Printing. Polymers. 13. PMID 34577946 DOI: 10.3390/polym13183044  0.168
2022 Tolmachev D, Lukasheva N, Ramazanov R, Nazarychev V, Borzdun N, Volgin I, Andreeva M, Glova A, Melnikova S, Dobrovskiy A, Silber SA, Larin S, de Souza RM, Ribeiro MCC, Lyulin S, ... Karttunen M, et al. Computer Simulations of Deep Eutectic Solvents: Challenges, Solutions, and Perspectives. International Journal of Molecular Sciences. 23. PMID 35054840 DOI: 10.3390/ijms23020645  0.166
2009 Murtola T, Bunker A, Vattulainen I, Deserno M, Karttunen M. Multiscale modeling of emergent materials: biological and soft matter. Physical Chemistry Chemical Physics : Pccp. 11: 1869-92. PMID 19279999 DOI: 10.1039/B818051B  0.161
2004 Aström JA, Timonen J, Karttunen M. Crumpling of a stiff tethered membrane. Physical Review Letters. 93: 244301. PMID 15697819 DOI: 10.1103/PhysRevLett.93.244301  0.158
2007 Stimson L, Dong L, Karttunen M, Wisniewska A, Dutka M, Róg T. Stearic acid spin labels in lipid bilayers: insight through atomistic simulations. The Journal of Physical Chemistry. B. 111: 12447-53. PMID 17929861 DOI: 10.1021/jp0746796  0.157
2021 Wilson CJ, Chang M, Karttunen M, Choy WY. KEAP1 Cancer Mutants: A Large-Scale Molecular Dynamics Study of Protein Stability. International Journal of Molecular Sciences. 22. PMID 34065616 DOI: 10.3390/ijms22105408  0.155
2011 Grohe B, O'Young J, Langdon A, Karttunen M, Goldberg HA, Hunter GK. Citrate modulates calcium oxalate crystal growth by face-specific interactions. Cells, Tissues, Organs. 194: 176-81. PMID 21555861 DOI: 10.1159/000324338  0.148
2021 Khuntawee W, Amornloetwattana R, Vongsangnak W, Namdee K, Yata T, Karttunen M, Wong-Ekkabut J. and design of cordycepin encapsulation in liposomes for colon cancer treatment. Rsc Advances. 11: 8475-8484. PMID 35423402 DOI: 10.1039/d1ra00038a  0.147
2010 Azzopardi PV, O'Young J, Lajoie G, Karttunen M, Goldberg HA, Hunter GK. Roles of electrostatics and conformation in protein-crystal interactions. Plos One. 5: e9330. PMID 20174473 DOI: 10.1371/Journal.Pone.0009330  0.146
2014 Cisneros GA, Karttunen M, Ren P, Sagui C. Classical electrostatics for biomolecular simulations. Chemical Reviews. 114: 779-814. PMID 23981057 DOI: 10.1021/Cr300461D  0.145
2011 O'Young J, Liao Y, Xiao Y, Jalkanen J, Lajoie G, Karttunen M, Goldberg HA, Hunter GK. Matrix Gla protein inhibits ectopic calcification by a direct interaction with hydroxyapatite crystals. Journal of the American Chemical Society. 133: 18406-12. PMID 21961692 DOI: 10.1021/Ja207628K  0.143
2016 Shao S, Do TN, Razi A, Chitgupi U, Geng J, Alsop RJ, Dzikovski BG, Rheinstädter MC, Ortega J, Karttunen M, Spernyak JA, Lovell JF. Design of Hydrated Porphyrin-Phospholipid Bilayers with Enhanced Magnetic Resonance Contrast. Small (Weinheim An Der Bergstrasse, Germany). PMID 27739249 DOI: 10.1002/Smll.201602505  0.139
2019 de Souza RM, de Siqueira LJA, Karttunen M, Dias LG. Molecular Dynamics Simulations of Polymer-Ionic Liquid (1-Ethyl-3-methylimidazolium Tetracyanoborate) Ternary Electrolyte for Sodium and Potassium Ion Batteries. Journal of Chemical Information and Modeling. 60: 485-499. PMID 31634431 DOI: 10.1021/acs.jcim.9b00750  0.138
2010 Hunter GK, O'Young J, Grohe B, Karttunen M, Goldberg HA. The flexible polyelectrolyte hypothesis of protein-biomineral interaction. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 18639-46. PMID 20527831 DOI: 10.1021/la100401r  0.138
2018 Karttunen M, Choy WY, Cino EA. Prediction of Binding Energy of Keap1 Interaction Motifs in the Nrf2 Antioxidant Pathway and Design of Potential High Affinity Peptides. The Journal of Physical Chemistry. B. PMID 29745220 DOI: 10.1021/acs.jpcb.8b03295  0.134
2014 Cino EA, Killoran RC, Karttunen M, Choy WY. Binding of disordered proteins to a protein hub. Scientific Reports. 3: 2305. PMID 23892546 DOI: 10.1038/srep02305  0.132
2016 Bagheri B, Baumeier B, Karttunen M. Getting excited: challenges in quantum-classical studies of excitons in polymeric systems. Physical Chemistry Chemical Physics : Pccp. PMID 27453482 DOI: 10.1039/c6cp02944b  0.131
2007 Grohe B, O'Young J, Ionescu DA, Lajoie G, Rogers KA, Karttunen M, Goldberg HA, Hunter GK. Control of calcium oxalate crystal growth by face-specific adsorption of an osteopontin phosphopeptide. Journal of the American Chemical Society. 129: 14946-51. PMID 17994739 DOI: 10.1021/Ja0745613  0.131
2015 Lu S, Bennett WF, Ding Y, Zhang L, Fan HY, Zhao D, Zheng T, Ouyang PK, Li J, Wu Y, Xu W, Chu D, Yuan Y, Heerklotz H, Karttunen M, et al. Design and Characterization of a Multifunctional pH-Triggered Peptide C8 for Selective Anticancer Activity. Advanced Healthcare Materials. PMID 26474414 DOI: 10.1002/Adhm.201500636  0.13
2021 Ardalan A, Sowlati-Hashjin S, Oduwoye H, Uwumarenogie SO, Karttunen M, Smith MD, Jelokhani-Niaraki M. Biphasic Proton Transport Mechanism for Uncoupling Proteins. The Journal of Physical Chemistry. B. PMID 34365794 DOI: 10.1021/acs.jpcb.1c04766  0.13
2003 Patra M, Patriarca M, Karttunen M. Stability of charge inversion, Thomson problem, and application to electrophoresis. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 031402. PMID 12689062 DOI: 10.1103/Physreve.67.031402  0.129
2013 Pannuzzo M, Raudino A, Milardi D, Rosa CL, Karttunen M. α-Helical Structures Drive Early Stages of Self-Assembly of Amyloidogenic Amyloid Polypeptide Aggregate Formation in Membranes Scientific Reports. 3: 2781-2781. PMID 24071712 DOI: 10.1038/Srep02781  0.128
2022 Sowlati-Hashjin S, Šadek V, Sadjadi S, Karttunen M, Martín-Pendás A, Foroutan-Nejad C. Collective interactions among organometallics are exotic bonds hidden on lab shelves. Nature Communications. 13: 2069. PMID 35440588 DOI: 10.1038/s41467-022-29504-0  0.128
2019 Lukasheva NV, Tolmachev DA, Karttunen M. Mineralization of phosphorylated cellulose: crucial role of surface structure and monovalent ions for optimizing calcium content. Physical Chemistry Chemical Physics : Pccp. 21: 1067-1077. PMID 30511059 DOI: 10.1039/c8cp05767b  0.127
2003 Huang J, Karttunen MM, Yu K, Dong LL. Dielectrophoresis of charged colloidal suspensions Physical Review E. 67: 21403. PMID 12636675 DOI: 10.1103/Physreve.67.021403  0.125
2012 Grohe B, Hug S, Langdon A, Jalkanen J, Rogers KA, Goldberg HA, Karttunen M, Hunter GK. Mimicking the biomolecular control of calcium oxalate monohydrate crystal growth: effect of contiguous glutamic acids. Langmuir : the Acs Journal of Surfaces and Colloids. 28: 12182-90. PMID 22838385 DOI: 10.1021/La3018985  0.121
2004 Leppänen T, Karttunen M, Barrio RA, Kaski K. Morphological transitions and bistability in Turing systems. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 066202. PMID 15697479 DOI: 10.1103/Physreve.70.066202  0.111
2002 Karttunen M, Pakkanen AL, Kinnunen PK, Kaski K. Computational modeling of DNA-cationic lipid complexation. Cellular & Molecular Biology Letters. 7: 238-9. PMID 12097931  0.107
2019 Stepanova M, Averianov I, Serdobintsev M, Gofman I, Blum N, Semenova N, Nashchekina Y, Vinogradova T, Korzhikov-Vlakh V, Karttunen M, Korzhikova-Vlakh E. PGlu-Modified Nanocrystalline Cellulose Improves Mechanical Properties, Biocompatibility, and Mineralization of Polyester-Based Composites. Materials (Basel, Switzerland). 12. PMID 31640122 DOI: 10.3390/ma12203435  0.105
2016 Wong-Ekkabut J, Karttunen M. The good, the bad and the user in soft matter simulations. Biochimica Et Biophysica Acta. 1858: 2529-2538. PMID 26862882 DOI: 10.1016/j.bbamem.2016.02.004  0.104
2022 Wilson CJ, Choy WY, Karttunen M. AlphaFold2: A Role for Disordered Protein/Region Prediction? International Journal of Molecular Sciences. 23. PMID 35562983 DOI: 10.3390/ijms23094591  0.103
2016 Do TN, Choy WY, Karttunen M. Binding of Disordered Peptides to Kelch: Insights from Enhanced Sampling Simulations. Journal of Chemical Theory and Computation. 12: 395-404. PMID 26636721 DOI: 10.1021/acs.jctc.5b00868  0.099
2005 Falck E, Patra M, Karttunen M, Hyvönen MT, Vattulainen I. Response to comment by Almeida et al.: free area theories for lipid bilayers--predictive or not? Biophysical Journal. 89: 745-52. PMID 15951371 DOI: 10.1529/biophysj.105.065714  0.097
2019 Hutter CAJ, Timachi MH, Hürlimann LM, Zimmermann I, Egloff P, Göddeke H, Kucher S, Štefanić S, Karttunen M, Schäfer LV, Bordignon E, Seeger MA. The extracellular gate shapes the energy profile of an ABC exporter. Nature Communications. 10: 2260. PMID 31113958 DOI: 10.1038/s41467-019-09892-6  0.097
2015 Mkrtchyan A, Åström J, Karttunen M. A new model for cell division and migration with spontaneous topology changes. Soft Matter. 10: 4332-9. PMID 24793724 DOI: 10.1039/c4sm00489b  0.095
2008 Aström JA, Kumar PB, Vattulainen I, Karttunen M. Strain hardening, avalanches, and strain softening in dense cross-linked actin networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 051913. PMID 18643108 DOI: 10.1103/PhysRevE.77.051913  0.093
2010 Baht GS, O'Young J, Borovina A, Chen H, Tye CE, Karttunen M, Lajoie GA, Hunter GK, Goldberg HA. Phosphorylation of Ser136 is critical for potent bone sialoprotein-mediated nucleation of hydroxyapatite crystals. The Biochemical Journal. 428: 385-95. PMID 20377527 DOI: 10.1042/BJ20091864  0.093
2004 Huang JP, Karttunen M, Yu KW, Dong L, Gu GQ. Electrokinetic behavior of two touching inhomogeneous biological cells and colloidal particles: effects of multipolar interactions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 051402. PMID 15244819 DOI: 10.1103/Physreve.69.051402  0.084
2003 Huang J, Yu K, Gu G, Karttunen MM. Electrorotation in graded colloidal suspensions. Physical Review E. 67: 51405. PMID 12786150 DOI: 10.1103/Physreve.67.051405  0.082
2004 Huang JP, Yu KW, Karttunen M. Nonlinear alternating current responses of dipolar fluids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 011403. PMID 15324047 DOI: 10.1103/Physreve.70.011403  0.074
2014 Do TN, Choy WY, Karttunen M. Accelerating the Conformational Sampling of Intrinsically Disordered Proteins. Journal of Chemical Theory and Computation. 10: 5081-94. PMID 26584388 DOI: 10.1021/ct5004803  0.07
2005 Dong L, Karttunen M, Yu KW. Spectral representation of the effective dielectric constant of graded composites. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 016613. PMID 16090113 DOI: 10.1103/PhysRevE.72.016613  0.068
2012 Åström JA, Sunil Kumar PB, Karttunen M. Stiffness transition in anisotropic fiber nets. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 021922. PMID 23005800 DOI: 10.1103/PhysRevE.86.021922  0.061
2010 Kaszuba K, Róg T, Bryl K, Vattulainen I, Karttunen M. Molecular dynamics simulations reveal fundamental role of water as factor determining affinity of binding of beta-blocker nebivolol to beta(2)-adrenergic receptor. The Journal of Physical Chemistry. B. 114: 8374-86. PMID 20524635 DOI: 10.1021/jp909971f  0.054
2009 O'Young J, Chirico S, Al Tarhuni N, Grohe B, Karttunen M, Goldberg HA, Hunter GK. Phosphorylation of osteopontin peptides mediates adsorption to and incorporation into calcium oxalate crystals. Cells, Tissues, Organs. 189: 51-5. PMID 18728346 DOI: 10.1159/000151724  0.053
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