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Hugh Nymeyer - Publications

Affiliations: 
2001 University of California, San Diego, La Jolla, CA 
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19/38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2009 Nymeyer H. Energy landscape of the trpzip2 peptide. The Journal of Physical Chemistry. B. 113: 8288-95. PMID 19469524 DOI: 10.1021/Jp806749B  0.493
2008 Nymeyer H. How Efficient Is Replica Exchange Molecular Dynamics? An Analytic Approach. Journal of Chemical Theory and Computation. 4: 626-36. PMID 26620937 DOI: 10.1021/Ct7003337  0.44
2008 Nymeyer H, Zhou HX. A method to determine dielectric constants in nonhomogeneous systems: application to biological membranes. Biophysical Journal. 94: 1185-93. PMID 17951302 DOI: 10.1529/Biophysj.107.117770  0.34
2008 Boone MA, Nymeyer H, Striegel AM. Determining the solution conformational entropy of O-linked oligosaccharides at quasi-physiological conditions: size-exclusion chromatography and molecular dynamics. Carbohydrate Research. 343: 132-8. PMID 17950712 DOI: 10.1016/J.Carres.2007.09.010  0.368
2008 Yang W, Nymeyer H, Zhou HX, Berg B, Brüschweiler R. Quantitative computer simulations of biomolecules: a snapshot. Journal of Computational Chemistry. 29: 668-72. PMID 17708535 DOI: 10.1002/Jcc.20819  0.431
2007 Paschek D, Nymeyer H, García AE. Replica exchange simulation of reversible folding/unfolding of the Trp-cage miniprotein in explicit solvent: on the structure and possible role of internal water. Journal of Structural Biology. 157: 524-33. PMID 17293125 DOI: 10.1016/J.Jsb.2006.10.031  0.516
2007 Ji L, Nymeyer H, Srinivasan A, Yu Y. Data-driven time-parallelization in the AFM simulation of proteins Proceedings - 21st International Parallel and Distributed Processing Symposium, Ipdps 2007; Abstracts and Cd-Rom. DOI: 10.1109/IPDPS.2007.370450  0.302
2007 Ji L, Nymeyer H, Srinivasan A, Yu Y. Data-driven time-parallelization in the AFM simulation of proteins Proceedings - 21st International Parallel and Distributed Processing Symposium, Ipdps 2007; Abstracts and Cd-Rom. DOI: 10.1109/IPDPS.2007.370450  0.302
2005 Nymeyer H, Woolf TB, Garcia AE. Folding is not required for bilayer insertion: replica exchange simulations of an alpha-helical peptide with an explicit lipid bilayer. Proteins. 59: 783-90. PMID 15828005 DOI: 10.1002/Prot.20460  0.411
2004 Nymeyer H, Gnanakaran S, García AE. Atomic simulations of protein folding, using the replica exchange algorithm. Methods in Enzymology. 383: 119-49. PMID 15063649 DOI: 10.1016/S0076-6879(04)83006-4  0.449
2003 Nymeyer H, García AE. Simulation of the folding equilibrium of alpha-helical peptides: a comparison of the generalized Born approximation with explicit solvent. Proceedings of the National Academy of Sciences of the United States of America. 100: 13934-9. PMID 14617775 DOI: 10.1073/Pnas.2232868100  0.408
2003 Gnanakaran S, Nymeyer H, Portman J, Sanbonmatsu KY, García AE. Peptide folding simulations. Current Opinion in Structural Biology. 13: 168-74. PMID 12727509 DOI: 10.1016/S0959-440X(03)00040-X  0.356
2002 Chahine J, Nymeyer H, Leite VB, Socci ND, Onuchic JN. Specific and nonspecific collapse in protein folding funnels. Physical Review Letters. 88: 168101. PMID 11955268 DOI: 10.1103/Physrevlett.88.168101  0.582
2000 Clementi C, Nymeyer H, Onuchic JN. Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins. Journal of Molecular Biology. 298: 937-53. PMID 10801360 DOI: 10.1006/Jmbi.2000.3693  0.652
2000 Onuchic JN, Nymeyer H, García AE, Chahine J, Socci ND. The energy landscape theory of protein folding: insights into folding mechanisms and scenarios. Advances in Protein Chemistry. 53: 87-152. PMID 10751944 DOI: 10.1016/S0065-3233(00)53003-4  0.644
2000 Nymeyer H, Socci ND, Onuchic JN. Landscape approaches for determining the ensemble of folding transition states: success and failure hinge on the degree of frustration. Proceedings of the National Academy of Sciences of the United States of America. 97: 634-9. PMID 10639131 DOI: 10.1073/Pnas.97.2.634  0.626
1998 Nymeyer H, García AE, Onuchic JN. Folding funnels and frustration in off-lattice minimalist protein landscapes. Proceedings of the National Academy of Sciences of the United States of America. 95: 5921-8. PMID 9600893 DOI: 10.1073/Pnas.95.11.5921  0.622
1997 Socci ND, Nymeyer H, Onuchic JN. Exploring the protein folding funnel landscape Physica D: Nonlinear Phenomena. 107: 366-382. DOI: 10.1016/S0167-2789(97)00105-X  0.609
1997 Socci ND, Nymeyer H, Onuchic JN. Exploring the protein folding funnel landscape Physica D: Nonlinear Phenomena. 107: 366-382.  0.466
Low-probability matches (unlikely to be authored by this person)
2010 Nymeyer H, Arthur DR. Understanding and Optimizing the Performance of Extended Ensemble Algorithms Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.3110  0.297
2008 Yi M, Nymeyer H, Zhou HX. Test of the Gouy-Chapman theory for a charged lipid membrane against explicit-solvent molecular dynamics simulations. Physical Review Letters. 101: 038103. PMID 18764300 DOI: 10.1103/Physrevlett.101.038103  0.29
2006 Norman KE, Nymeyer H. Indole localization in lipid membranes revealed by molecular simulation. Biophysical Journal. 91: 2046-54. PMID 16815896 DOI: 10.1529/Biophysj.105.080275  0.267
2010 Nymeyer H. Serial tempering without exchange. The Journal of Chemical Physics. 133: 114113. PMID 20866132 DOI: 10.1063/1.3480013  0.199
1997 Haan SL, Langdon B, Streutker D, Nymeyer H. Formation and collapse of a bound dressed state in strong-field, near-threshold photodetachment Laser Physics. 7: 115-118.  0.145
1997 Haan SL, Langdon B, Streutker D, Nymeyer H. Formation and collapse of a bound dressed state in strong-field, near-threshold photodetachment Laser Physics. 7: 115-118.  0.145
2008 Nymeyer H. How efficient is replica exchange molecular dynamics? An analytic approach Journal of Chemical Theory and Computation. 4: 626-636. DOI: 10.1021/ct7003337  0.13
2023 Nymeyer H, Nedosekin D, Wong HK. The effect of comorbid autoimmune gastrointestinal diseases on time to resolution of pyoderma gangrenosum: A retrospective review. Jaad International. 12: 58-59. PMID 37274385 DOI: 10.1016/j.jdin.2023.04.008  0.06
2006 Ji L, Yu Y, Chandra N, Nymeyer H, Srinivasan A. Data-driven time parallelization Proceedings of the 2006 Acm/Ieee Conference On Supercomputing, Sc'06. DOI: 10.1145/1188455.1188609  0.057
2006 Ji L, Yu Y, Chandra N, Nymeyer H, Srinivasan A. Data-driven time parallelization Proceedings of the 2006 Acm/Ieee Conference On Supercomputing, Sc'06. DOI: 10.1145/1188455.1188609  0.057
1956 NYMEYER HJ. Decalcification by vacuum method. Canadian Journal of Medical Technology. 18: 29. PMID 13304766  0.055
2021 Ederle A, Whisonant CT, Nymeyer H. Erythematous Plaques and Tense Bullae in an Infant. Cureus. 13: e16623. PMID 34336533 DOI: 10.7759/cureus.16623  0.05
2020 O'Brien JC, Nymeyer H, Green A, Jacobe HT. Changes in Disease Activity and Damage Over Time in Patients With Morphea. Jama Dermatology. PMID 32236501 DOI: 10.1001/jamadermatol.2020.0034  0.027
2014 Nymeyer H, Lappi DA, Higgins D, Ahn C, Noe C. Preliminary results from a phase I study of substance P-saporin in terminal cancer patients with intractable pain. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 32: 191. PMID 28142650 DOI: 10.1200/Jco.2014.32.31_Suppl.191  0.025
2017 Blankenship DW, Nymeyer H, Mauskar MM. Cutaneous Ulcers Secondary to Cytomegalovirus and Herpes Simplex Virus in an Immunocompromised Patient. The American Journal of the Medical Sciences. 353: e3. PMID 28183428 DOI: 10.1016/j.amjms.2016.11.018  0.018
2023 Dreher K, Rick JW, Nymeyer H, Evans MS. Multiple Hyperpigmented Lesions in a Young Girl. Pediatrics in Review. 44: 33-36. PMID 36587023 DOI: 10.1542/pir.2021-005106  0.012
1996 Zuo D, Vos T, Nymeyer H, Reynolds L, Schnyders HS, Van Zytveld JB. Electronic properties of the liquid alloys AlCa and AlBa Journal of Non-Crystalline Solids. 205: 328-331. DOI: 10.1016/S0022-3093(96)00249-9  0.01
1996 Zuo D, Vos T, Nymeyer H, Reynolds L, Schnyders HS, Van Zytveld JB. Electronic properties of the liquid alloys AlCa and AlBa Journal of Non-Crystalline Solids. 205: 328-331. DOI: 10.1016/S0022-3093(96)00249-9  0.01
1995 Haan SL, Bolt M, Nymeyer H, Grobe R. Effects of positive-ion resonances in photoionization of neutral atoms. Physical Review. A. 51: 4640-4651. PMID 9912154 DOI: 10.1103/PhysRevA.51.4640  0.01
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