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Jason E. Donald, Ph.D. - Publications

Affiliations: 
2007 Harvard University, Cambridge, MA, United States 
Area:
Protein Folding and Design, Molecular Evolution, Drug Discovery
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2012 Schramm CA, Hannigan BT, Donald JE, Keasar C, Saven JG, Degrado WF, Samish I. Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions. Structure (London, England : 1993). 20: 924-35. PMID 22579257 DOI: 10.1016/J.Str.2012.03.016  0.482
2011 Kim YH, Donald JE, Grigoryan G, Leser GP, Fadeev AY, Lamb RA, DeGrado WF. Capture and imaging of a prehairpin fusion intermediate of the paramyxovirus PIV5. Proceedings of the National Academy of Sciences of the United States of America. 108: 20992-7. PMID 22178759 DOI: 10.1073/Pnas.1116034108  0.432
2011 Donald JE, Zhang Y, Fiorin G, Carnevale V, Slochower DR, Gai F, Klein ML, DeGrado WF. Transmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion. Proceedings of the National Academy of Sciences of the United States of America. 108: 3958-63. PMID 21321234 DOI: 10.1073/Pnas.1019668108  0.419
2011 Donald JE, Kulp DW, DeGrado WF. Salt bridges: geometrically specific, designable interactions. Proteins. 79: 898-915. PMID 21287621 DOI: 10.1002/Prot.22927  0.533
2011 Fiorin G, Donald JE, Zhang Y, Carnevale V, Slochower DR, Gai F, Klein ML, DeGrado WF. Association of Transmembrane Helices in Viral Fusion Peptides Suggests a Protein-Centric Mechanism of Membrane Fusion Biophysical Journal. 100: 633a. DOI: 10.1016/J.Bpj.2010.12.3637  0.454
2010 Donald JE, Zhu H, Litvinov RI, DeGrado WF, Bennett JS. Identification of interacting hot spots in the beta3 integrin stalk using comprehensive interface design. The Journal of Biological Chemistry. 285: 38658-65. PMID 20929856 DOI: 10.1074/Jbc.M110.170670  0.389
2009 Bissonnette ML, Donald JE, DeGrado WF, Jardetzky TS, Lamb RA. Functional analysis of the transmembrane domain in paramyxovirus F protein-mediated membrane fusion. Journal of Molecular Biology. 386: 14-36. PMID 19121325 DOI: 10.1016/J.Jmb.2008.12.029  0.424
2009 Donald JE, Shakhnovich EI. SDR: a database of predicted specificity-determining residues in proteins. Nucleic Acids Research. 37: D191-4. PMID 18927118 DOI: 10.1093/Nar/Gkn716  0.692
2009 Donald JE, Zhu H, DeGrado WF, Bennett JS. Identification of Stalk Mutations That Stabilize the High Affinity Conformation of αIIbβ3 by Negative Design. Blood. 114: 4017-4017. DOI: 10.1182/Blood.V114.22.4017.4017  0.394
2007 Donald JE, Chen WW, Shakhnovich EI. Energetics of protein-DNA interactions. Nucleic Acids Research. 35: 1039-47. PMID 17259221 DOI: 10.1093/Nar/Gkl1103  0.602
2005 Donald JE, Shakhnovich EI. Predicting specificity-determining residues in two large eukaryotic transcription factor families. Nucleic Acids Research. 33: 4455-65. PMID 16085755 DOI: 10.1093/Nar/Gki755  0.669
2005 Donald JE, Shakhnovich EI. Determining functional specificity from protein sequences. Bioinformatics (Oxford, England). 21: 2629-35. PMID 15797914 DOI: 10.1093/Bioinformatics/Bti396  0.644
2005 Donald JE, Hubner IA, Rotemberg VM, Shakhnovich EI, Mirny LA. CoC: a database of universally conserved residues in protein folds. Bioinformatics (Oxford, England). 21: 2539-40. PMID 15746286 DOI: 10.1093/Bioinformatics/Bti360  0.485
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