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Gabriel J. Rocklin, Ph.D. - Publications

Affiliations: 
2007-2013 Biophysics University of California, San Francisco, San Francisco, CA 
 2013-2019 Biochemistry University of Washington, Seattle, Seattle, WA 
 2019- Pharmacology Northwestern University Feinberg School of Medicine, Chicago, IL, United States 
Area:
protein folding and stability
Website:
www.rocklinlab.org
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Olshefsky A, Benasutti H, Sylvestre M, Butterfield GL, Rocklin GJ, Richardson C, Hicks DR, Lajoie MJ, Song K, Leaf E, Treichel C, Decarreau J, Ke S, Kher G, Carter L, et al. In vivo selection of synthetic nucleocapsids for tissue targeting. Proceedings of the National Academy of Sciences of the United States of America. 120: e2306129120. PMID 37939083 DOI: 10.1073/pnas.2306129120  0.328
2023 Tsuboyama K, Dauparas J, Chen J, Laine E, Mohseni Behbahani Y, Weinstein JJ, Mangan NM, Ovchinnikov S, Rocklin GJ. Mega-scale experimental analysis of protein folding stability in biology and design. Nature. PMID 37468638 DOI: 10.1038/s41586-023-06328-6  0.618
2022 Singer JM, Novotney S, Strickland D, Haddox HK, Leiby N, Rocklin GJ, Chow CM, Roy A, Bera AK, Motta FC, Cao L, Strauch EM, Chidyausiku TM, Ford A, Ho E, et al. Large-scale design and refinement of stable proteins using sequence-only models. Plos One. 17: e0265020. PMID 35286324 DOI: 10.1371/journal.pone.0265020  0.714
2017 Chevalier A, Silva DA, Rocklin GJ, Hicks DR, Vergara R, Murapa P, Bernard SM, Zhang L, Lam KH, Yao G, Bahl CD, Miyashita SI, Goreshnik I, Fuller JT, Koday MT, et al. Massively parallel de novo protein design for targeted therapeutics. Nature. PMID 28953867 DOI: 10.1038/Nature23912  0.734
2017 Rocklin GJ, Chidyausiku TM, Goreshnik I, Ford A, Houliston S, Lemak A, Carter L, Ravichandran R, Mulligan VK, Chevalier A, Arrowsmith CH, Baker D. Global analysis of protein folding using massively parallel design, synthesis, and testing. Science (New York, N.Y.). 357: 168-175. PMID 28706065 DOI: 10.1126/Science.Aan0693  0.491
2017 Lemak A, Rocklin GJ, Houliston S, Carter L, Chidyausiku TM, Baker D, Arrowsmith CH. Solution NMR structure of the de novo mini protein HEEH_rd4_0097 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb5Uyo/Pdb  0.387
2017 Rocklin GJ, Chidyausiku T, Goreshnik I, Ford A, Houliston S, Arrowsmith C, Baker D. High-Throughput Protein Design Reveals Quantitative Protein Stability Requirements Biophysical Journal. 112: 194a. DOI: 10.1016/J.Bpj.2016.11.1076  0.502
2016 Bhardwaj G, Mulligan VK, Bahl CD, Gilmore JM, Harvey PJ, Cheneval O, Buchko GW, Pulavarti SV, Kaas Q, Eletsky A, Huang PS, Johnsen WA, Greisen PJ, Rocklin GJ, Song Y, et al. Accurate de novo design of hyperstable constrained peptides. Nature. PMID 27626386 DOI: 10.1038/Nature19791  0.695
2014 Mobley DL, Rocklin GJ. Predicting Charged-Ligand Binding from Molecular Simulations Biophysical Journal. 106: 250a. DOI: 10.1016/J.Bpj.2013.11.1462  0.716
2013 Rocklin GJ, Mobley DL, Dill KA, Hünenberger PH. Calculating the binding free energies of charged species based on explicit-solvent simulations employing lattice-sum methods: an accurate correction scheme for electrostatic finite-size effects. The Journal of Chemical Physics. 139: 184103. PMID 24320250 DOI: 10.1063/1.4826261  0.681
2013 Rocklin GJ, Mobley DL, Dill KA. Calculating the sensitivity and robustness of binding free energy calculations to force field parameters. Journal of Chemical Theory and Computation. 9: 3072-3083. PMID 24015114 DOI: 10.1021/Ct400315Q  0.722
2013 Rocklin GJ, Boyce SE, Fischer M, Fish I, Mobley DL, Shoichet BK, Dill KA. Blind prediction of charged ligand binding affinities in a model binding site. Journal of Molecular Biology. 425: 4569-83. PMID 23896298 DOI: 10.1016/J.Jmb.2013.07.030  0.718
2013 Rocklin GJ, Mobley DL, Dill KA. Separated topologies--a method for relative binding free energy calculations using orientational restraints. The Journal of Chemical Physics. 138: 085104. PMID 23464180 DOI: 10.1063/1.4792251  0.723
2009 Boyce SE, Mobley DL, Rocklin GJ, Graves AP, Dill KA, Shoichet BK. Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site. Journal of Molecular Biology. 394: 747-63. PMID 19782087 DOI: 10.1016/J.Jmb.2009.09.049  0.687
2009 Teotico DG, Babaoglu K, Rocklin GJ, Ferreira RS, Giannetti AM, Shoichet BK. Docking for fragment inhibitors of AmpC beta-lactamase. Proceedings of the National Academy of Sciences of the United States of America. 106: 7455-60. PMID 19416920 DOI: 10.1073/Pnas.0813029106  0.658
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