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Xuerui Yang, Ph.D. - Publications

Affiliations: 
2009 Michigan State University, East Lansing, MI 
Area:
Molecular Biology, Bioinformatics Biology, Chemical Engineering
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Liu L, Lu JY, Li F, Xing X, Li T, Yang X, Shen X. IDH1 fine-tunes cap-dependent translation initiation. Journal of Molecular Cell Biology. PMID 31408165 DOI: 10.1093/Jmcb/Mjz082  0.324
2019 Zou Q, Xiao Z, Huang R, Wang X, Wang X, Zhao H, Yang X. Survey of the translation shifts in hepatocellular carcinoma with ribosome profiling. Theranostics. 9: 4141-4155. PMID 31281537 DOI: 10.7150/Thno.35033  0.309
2019 Wang H, Xiao Z, Zheng J, Wu J, Hu XL, Yang X, Shen Q. ZEB1 Represses Neural Differentiation and Cooperates with CTBP2 to Dynamically Regulate Cell Migration during Neocortex Development. Cell Reports. 27: 2335-2353.e6. PMID 31116980 DOI: 10.1016/J.Celrep.2019.04.081  0.307
2019 Liu Y, Liu Y, Huang R, Song W, Wang J, Xiao Z, Dong S, Yang Y, Yang X. Dependency of the Cancer-Specific Transcriptional Regulation Circuitry on the Promoter DNA Methylome. Cell Reports. 26: 3461-3474.e5. PMID 30893615 DOI: 10.1016/J.Celrep.2019.02.084  0.336
2018 Wu Y, Zhao W, Liu Y, Tan X, Li X, Zou Q, Xiao Z, Xu H, Wang Y, Yang X. Function of HNRNPC in breast cancer cells by controlling the dsRNA-induced interferon response. The Embo Journal. PMID 30158112 DOI: 10.15252/Embj.201899017  0.328
2018 Li X, Wang X, Song W, Xu H, Huang R, Wang Y, Zhao W, Xiao Z, Yang X. Oncogenic properties of NEAT1 in prostate cancer cells depend on the CDC5L-AGRN transcriptional regulation circuit. Cancer Research. PMID 29871935 DOI: 10.1158/0008-5472.Can-18-0688  0.335
2018 Chiu HS, Martínez MR, Komissarova EV, Llobet-Navas D, Bansal M, Paull EO, Silva J, Yang X, Sumazin P, Califano A. The number of titrated microRNA species dictates ceRNA regulation. Nucleic Acids Research. PMID 29684207 DOI: 10.1093/Nar/Gky286  0.303
2017 Zhang Y, Xiao Z, Zou Q, Fang J, Wang Q, Yang X, Gao N. Ribosome Profiling Reveals Genome-wide Cellular Translational Regulation upon Heat Stress in Escherichia coli. Genomics, Proteomics & Bioinformatics. PMID 29031842 DOI: 10.1016/J.Gpb.2017.04.005  0.303
2017 Lin Z, Hsu PJ, Xing X, Fang J, Lu Z, Zou Q, Zhang KJ, Zhang X, Zhou Y, Zhang T, Zhang Y, Song W, Jia G, Yang X, He C, et al. Mettl3-/Mettl14-mediated mRNA N(6)-methyladenosine modulates murine spermatogenesis. Cell Research. PMID 28914256 DOI: 10.1038/Cr.2017.117  0.327
2016 Xiao Z, Zou Q, Liu Y, Yang X. Genome-wide assessment of differential translations with ribosome profiling data. Nature Communications. 7: 11194. PMID 27041671 DOI: 10.1038/Ncomms11194  0.36
2015 Chiu HS, Llobet-Navas D, Yang X, Chung WJ, Ambesi-Impiombato A, Iyer A, Kim HR, Seviour EG, Luo Z, Sehgal V, Moss T, Lu Y, Ram P, Silva J, Mills GB, et al. Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks. Genome Research. 25: 257-67. PMID 25378249 DOI: 10.1101/Gr.178194.114  0.306
2015 Liu Y, Liu Y, Xiao Z, Yang X. Abstract A2-54: DNA methylation-dependent transcription regulatory networks elucidate dynamics of transcription regulatory circuitry in cancers Cancer Research. 75. DOI: 10.1158/1538-7445.Transcagen-A2-54  0.342
2015 Chiu H, Yang X, Califano A, Sumazin P. Abstract IA14: Genomic alterations dysregulate cancer genes by modulating microRNA activity Cancer Research. 75. DOI: 10.1158/1538-7445.Compsysbio-Ia14  0.326
2013 Chiu H, Yang X, Martínez MR, Iyer A, Sumazin P, Califano A. Abstract 5231: Highly conserved ceRNA regulatory interactions cooperate with genomic variability to modulate drivers of tumorigenesis. Cancer Research. 73: 5231-5231. DOI: 10.1158/1538-7445.Am2013-5231  0.349
2012 Yang X, Chan C, Lam D, Schipper D, Stanley JM, Chen X, Jones RA, Holliday BJ, Wong WK, Chen S, Chen Q. Anion-dependent construction of two hexanuclear 3d-4f complexes with a flexible Schiff base ligand. Dalton Transactions (Cambridge, England : 2003). 41: 11449-53. PMID 22892983 DOI: 10.1039/C2Dt31268A  0.344
2012 Sumazin P, Califano A, Chiu Hs, Yang X. Abstract 4186: An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma Molecular and Cellular Biology. DOI: 10.1158/1538-7445.Am2012-4186  0.308
2011 Wang X, Nath A, Yang X, Portis A, Walton SP, Chan C. Synergy analysis reveals association between insulin signaling and desmoplakin expression in palmitate treated HepG2 cells. Plos One. 6: e28138. PMID 22132232 DOI: 10.1371/Journal.Pone.0028138  0.697
2011 Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, Rajbhandari P, Bansal M, Guarnieri P, Silva J, Califano A. An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma. Cell. 147: 370-81. PMID 22000015 DOI: 10.1016/J.Cell.2011.09.041  0.355
2011 Yang X, Lam D, Chan C, Stanley JM, Jones RA, Holliday BJ, Wong WK. Construction of 1-D 4f and 3d-4f coordination polymers with flexible Schiff base ligands. Dalton Transactions (Cambridge, England : 2003). 40: 9795-801. PMID 21874186 DOI: 10.1039/C1Dt11036E  0.337
2011 Sumazin P, Yang X, Chung W, Bansal M, Califano A. Abstract LB-339: MicroRNA modulators regulate oncogenes and tumor suppressors in glioblastoma Cancer Research. 71. DOI: 10.1158/1538-7445.Am2011-Lb-339  0.342
2011 Chung W, Sumazin P, Yang X, Bansal M, Califano A. Abstract LB-337: Post-transcriptional regulators of microRNA biogenesis drive glioblastoma-specific expression Cellular and Molecular Biology. 71. DOI: 10.1158/1538-7445.Am2011-Lb-337  0.329
2010 Chan C, Yang X, Jones RA, Holliday BJ, Stanley JM. {μ-6,6'-Dimeth-oxy-2,2'-[butane-1,4-diylbis(nitrilo-methyl-idyne)]diphenolato-1:2κO,O,O,O:O,N,N',O}tris-(nitrato-1κO,O')copper(II)gadolinium(III). Acta Crystallographica. Section E, Structure Reports Online. 66: m576-7. PMID 21579057 DOI: 10.1107/S1600536810014716  0.33
2010 Yang X, Nath A, Opperman MJ, Chan C. The double-stranded RNA-dependent protein kinase differentially regulates insulin receptor substrates 1 and 2 in HepG2 cells. Molecular Biology of the Cell. 21: 3449-58. PMID 20685959 DOI: 10.1091/Mbc.E10-06-0481  0.682
2009 Wu M, Yang X, Chan C. A dynamic analysis of IRS-PKR signaling in liver cells: a discrete modeling approach. Plos One. 4: e8040. PMID 19956598 DOI: 10.1371/Journal.Pone.0008040  0.509
2009 Yang X, Zhou Y, Jin R, Chan C. Reconstruct modular phenotype-specific gene networks by knowledge-driven matrix factorization. Bioinformatics (Oxford, England). 25: 2236-43. PMID 19542155 DOI: 10.1093/Bioinformatics/Btp376  0.525
2009 Yang X, Chan C. Repression of PKR mediates palmitate-induced apoptosis in HepG2 cells through regulation of Bcl-2. Cell Research. 19: 469-86. PMID 19259124 DOI: 10.1038/Cr.2009.25  0.515
2009 Li Z, He ML, Yao H, Dong QM, Chen YC, Chan CY, Zheng BJ, Yuen KY, Peng Y, Sun Q, Yang X, Lin MC, Sung JJ, Kung HF. Inhibition of HBV replication and gene expression in vitro and in vivo with a single AAV vector delivering two shRNA molecules. Bmb Reports. 42: 59-64. PMID 19192395 DOI: 10.5483/Bmbrep.2009.42.1.059  0.41
2009 Shalev I, Wong KM, Foerster K, Zhu Y, Chan C, Maknojia A, Zhang J, Ma XZ, Yang XC, Gao JF, Liu H, Selzner N, Clark DA, Adeyi O, Phillips MJ, et al. The novel CD4+CD25+ regulatory T cell effector molecule fibrinogen-like protein 2 contributes to the outcome of murine fulminant viral hepatitis. Hepatology (Baltimore, Md.). 49: 387-97. PMID 19085958 DOI: 10.1002/Hep.22684  0.397
2007 Srivastava S, Li Z, Yang X, Yedwabnick M, Shaw S, Chan C. Identification of genes that regulate multiple cellular processes/responses in the context of lipotoxicity to hepatoma cells. Bmc Genomics. 8: 364. PMID 17925029 DOI: 10.1186/1471-2164-8-364  0.659
2007 Zhang X, Kong B, Tsui OK, Yang X, Mi Y, Chan CM, Xu B. Effect of pattern topology on the self-cleaning properties of textured surfaces. The Journal of Chemical Physics. 127: 014703. PMID 17627360 DOI: 10.1063/1.2748383  0.34
2007 Li Z, Srivastava S, Mittal S, Yang X, Sheng L, Chan C. A Three Stage Integrative Pathway Search (TIPS) framework to identify toxicity relevant genes and pathways. Bmc Bioinformatics. 8: 202. PMID 17570844 DOI: 10.1186/1471-2105-8-202  0.654
2007 Li Z, Srivastava S, Yang X, Mittal S, Norton P, Resau J, Haab B, Chan C. A hierarchical approach employing metabolic and gene expression profiles to identify the pathways that confer cytotoxicity in HepG2 cells. Bmc Systems Biology. 1: 21. PMID 17498300 DOI: 10.1186/1752-0509-1-21  0.643
2002 Mehta S, Yang XM, Chan CS, Dobson MJ, Jayaram M, Velmurugan S. The 2 micron plasmid purloins the yeast cohesin complex: a mechanism for coupling plasmid partitioning and chromosome segregation? The Journal of Cell Biology. 158: 625-37. PMID 12177044 DOI: 10.1083/Jcb.200204136  0.361
2001 Xin B, He Z, Yang X, Chan CP, Ng MH, Cao L. TRADD domain of Epstein-Barr virus transforming protein LMP1 is essential for inducing immortalization and suppressing senescence of primary rodent fibroblasts. Journal of Virology. 75: 3010-5. PMID 11222727 DOI: 10.1128/JVI.75.6.3010-3015.2001  0.422
2000 Velmurugan S, Yang XM, Chan CS, Dobson M, Jayaram M. Partitioning of the 2-microm circle plasmid of Saccharomyces cerevisiae. Functional coordination with chromosome segregation and plasmid-encoded rep protein distribution. The Journal of Cell Biology. 149: 553-66. PMID 10791970 DOI: 10.1083/Jcb.149.3.553  0.396
2000 He Z, Xin B, Yang X, Chan C, Cao L. Nuclear factor-kappaB activation is involved in LMP1-mediated transformation and tumorigenesis of rat-1 fibroblasts. Cancer Research. 60: 1845-8. PMID 10766170  0.421
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