Richard D. Emes, BSc PhD - Publications

Affiliations: 
School of Veterinary Medicine and Science University of Nottingham, Nottingham, England, United Kingdom 
Area:
Cognition, Evolution
Website:
http://www.nottingham.ac.uk/vet/people/richard.emes

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Simpson S, Dunning M, de Brot S, Alibhai A, Bailey C, Woodcock CL, Mestas M, Akhtar S, Jeyapalan JN, Lothion-Roy J, Emes RD, Allegrucci C, Rizvanov AA, Mongan NP, Rutland CS. Molecular Characterisation of Canine Osteosarcoma in High Risk Breeds. Cancers. 12. PMID 32854182 DOI: 10.3390/Cancers12092405  0.344
2019 Sarker N, Fabijan J, Seddon J, Tarlinton R, Owen H, Simmons G, Thia J, Blanchard AM, Speight N, Kaler J, Emes RD, Woolford L, Trott D, Hemmatzadeh F, Meers J. Genetic diversity of Koala retrovirus env gene subtypes: insights into northern and southern koala populations. The Journal of General Virology. PMID 31329088 DOI: 10.1099/Jgv.0.001304  0.3
2018 Cong W, Dottorini T, Khan F, Emes RD, Zhang FK, Zhou CX, He JJ, Zhang XX, Elsheikha HM, Zhu XQ. Acute Infection in Cats Induced Tissue-Specific Transcriptional Response Dominated by Immune Signatures. Frontiers in Immunology. 9: 2403. PMID 30405608 DOI: 10.3389/Fimmu.2018.02403  0.319
2018 Blanchard AM, Jolley KA, Maiden MCJ, Coffey TJ, Maboni G, Staley CE, Bollard NJ, Warry A, Emes RD, Davies PL, Tötemeyer S. The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme for . Frontiers in Microbiology. 9: 551. PMID 29628922 DOI: 10.3389/Fmicb.2018.00551  0.301
2018 Sarker N, Fabijan J, Emes RD, Hemmatzadeh F, Meers J, Moreton J, Owen H, Seddon JM, Simmons G, Speight N, Trott D, Woolford L, Tarlinton RE. Identification of stable reference genes for quantitative PCR in koalas. Scientific Reports. 8: 3364. PMID 29463845 DOI: 10.1038/S41598-018-21723-0  0.318
2017 Bhandare SG, Warry A, Emes RD, Hooton SPT, Barrow PA, Atterbury RJ. Complete Genome Sequences of Vibrio cholerae-Specific Bacteriophages 24 and X29. Genome Announcements. 5. PMID 29146843 DOI: 10.1128/Genomea.01013-17  0.308
2017 Bayés À, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG. Evolution of complexity in the zebrafish synapse proteome. Nature Communications. 8: 14613. PMID 28252024 DOI: 10.1038/Ncomms14613  0.586
2016 Blanchard AM, Egan SA, Emes RD, Warry A, Leigh JA. PIMMS (Pragmatic Insertional Mutation Mapping System) Laboratory Methodology a Readily Accessible Tool for Identification of Essential Genes in Streptococcus. Frontiers in Microbiology. 7: 1645. PMID 27826289 DOI: 10.3389/Fmicb.2016.01645  0.33
2016 Kitchen MO, Bryan RT, Emes RD, Glossop JR, Luscombe C, Cheng K, Zeegers MP, James ND, Devall AJ, Mein CA, Gommersall L, Fryer AA, Farrell WE. Quantitative genome-wide methylation analysis of high-grade non-muscle invasive bladder cancer. Epigenetics. 0. PMID 26929985 DOI: 10.1080/15592294.2016.1154246  0.329
2015 Moreton J, Izquierdo A, Emes RD. Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes. Frontiers in Genetics. 6: 361. PMID 26793234 DOI: 10.3389/Fgene.2015.00361  0.325
2015 Blanchard AM, Leigh JA, Egan SA, Emes RD. Transposon insertion mapping with PIMMS - Pragmatic Insertional Mutation Mapping System. Frontiers in Genetics. 6: 139. PMID 25914720 DOI: 10.3389/Fgene.2015.00139  0.309
2015 Hossain M, Egan SA, Coffey T, Ward PN, Wilson R, Leigh JA, Emes RD. Virulence related sequences; insights provided by comparative genomics of Streptococcus uberis of differing virulence. Bmc Genomics. 16: 334. PMID 25898893 DOI: 10.1186/S12864-015-1512-6  0.322
2015 Japa O, Hodgkinson JE, Emes RD, Flynn RJ. TGF-β superfamily members from the helminth Fasciola hepatica show intrinsic effects on viability and development. Veterinary Research. 46: 29. PMID 25879787 DOI: 10.1186/S13567-015-0167-2  0.303
2015 Russell K, Emes R, Horrocks P. Triaging informative cis-regulatory elements for the combinatorial control of temporal gene expression during Plasmodium falciparum intraerythrocytic development Parasites and Vectors. 8. DOI: 10.1186/S13071-015-0701-0  0.305
2014 Russell K, Cheng CH, Bizzaro JW, Ponts N, Emes RD, Le Roch K, Marx KA, Horrocks P. Homopolymer tract organization in the human malarial parasite Plasmodium falciparum and related Apicomplexan parasites. Bmc Genomics. 15: 848. PMID 25281558 DOI: 10.1186/1471-2164-15-848  0.328
2014 Glossop JR, Emes RD, Nixon NB, Haworth KE, Packham JC, Dawes PT, Fryer AA, Mattey DL, Farrell WE. Genome-wide DNA methylation profiling in rheumatoid arthritis identifies disease-associated methylation changes that are distinct to individual T- and B-lymphocyte populations. Epigenetics : Official Journal of the Dna Methylation Society. 9: 1228-37. PMID 25147922 DOI: 10.4161/Epi.29718  0.303
2014 Brown K, Emes RD, Tarlinton RE. Multiple groups of endogenous epsilon-like retroviruses conserved across primates. Journal of Virology. 88: 12464-71. PMID 25142585 DOI: 10.1128/Jvi.00966-14  0.337
2014 Moreton J, Malla S, Aboobaker AA, Tarlinton RE, Emes RD. Characterisation of the horse transcriptome from immunologically active tissues. Peerj. 2: e382. PMID 24860704 DOI: 10.7717/Peerj.382  0.34
2014 Nilsson EM, Fainberg HP, Choong SS, Giles TC, Sells J, May S, Stansfield FJ, Allen WR, Emes RD, Mostyn A, Mongan NP, Yon L. Molecular characterization of adipose tissue in the African elephant (Loxodonta africana). Plos One. 9: e91717. PMID 24633017 DOI: 10.1371/Journal.Pone.0091717  0.302
2014 Smith SA, Haig D, Emes RD. Novel ovine polymorphisms and adaptive evolution in mammalian TLR2 suggest existence of multiple pathogen binding regions. Gene. 540: 217-25. PMID 24582976 DOI: 10.1016/J.Gene.2014.02.032  0.328
2014 Onoufriadis A, Shoemark A, Schmidts M, Patel M, Jimenez G, Liu H, Thomas B, Dixon M, Hirst RA, Rutman A, Burgoyne T, Williams C, Scully J, Bolard F, Lafitte JJ, ... ... Emes RD, et al. Targeted NGS gene panel identifies mutations in RSPH1 causing primary ciliary dyskinesia and a common mechanism for ciliary central pair agenesis due to radial spoke defects. Human Molecular Genetics. 23: 3362-74. PMID 24518672 DOI: 10.1093/Hmg/Ddu046  0.324
2014 Onoufriadis A, Shoemark A, Munye MM, James CT, Schmidts M, Patel M, Rosser EM, Bacchelli C, Beales PL, Scambler PJ, Hart SL, Danke-Roelse JE, Sloper JJ, Hull S, Hogg C, ... Emes RD, et al. Combined exome and whole-genome sequencing identifies mutations in ARMC4 as a cause of primary ciliary dyskinesia with defects in the outer dynein arm. Journal of Medical Genetics. 51: 61-7. PMID 24203976 DOI: 10.1136/Jmedgenet-2013-101938  0.359
2013 Schmidts M, Vodopiutz J, Christou-Savina S, Cortés CR, McInerney-Leo AM, Emes RD, Arts HH, Tüysüz B, D'Silva J, Leo PJ, Giles TC, Oud MM, Harris JA, Koopmans M, Marshall M, et al. Mutations in the gene encoding IFT dynein complex component WDR34 cause Jeune asphyxiating thoracic dystrophy. American Journal of Human Genetics. 93: 932-44. PMID 24183451 DOI: 10.1016/J.Ajhg.2013.10.003  0.308
2013 Duong CV, Yacqub-Usman K, Emes RD, Clayton RN, Farrell WE. The EFEMP1 gene: a frequent target for epigenetic silencing in multiple human pituitary adenoma subtypes. Neuroendocrinology. 98: 200-11. PMID 24080855 DOI: 10.1159/000355624  0.329
2013 Glossop JR, Nixon NB, Emes RD, Haworth KE, Packham JC, Dawes PT, Fryer AA, Mattey DL, Farrell WE. Epigenome-wide profiling identifies significant differences in DNA methylation between matched-pairs of T- and B-lymphocytes from healthy individuals. Epigenetics : Official Journal of the Dna Methylation Society. 8: 1188-97. PMID 24005183 DOI: 10.4161/Epi.26265  0.314
2013 Moore DJ, Onoufriadis A, Shoemark A, Simpson MA, zur Lage PI, de Castro SC, Bartoloni L, Gallone G, Petridi S, Woollard WJ, Antony D, Schmidts M, Didonna T, Makrythanasis P, Bevillard J, ... ... Emes RD, et al. Mutations in ZMYND10, a gene essential for proper axonemal assembly of inner and outer dynein arms in humans and flies, cause primary ciliary dyskinesia. American Journal of Human Genetics. 93: 346-56. PMID 23891471 DOI: 10.1016/J.Ajhg.2013.07.009  0.327
2013 Schmidts M, Arts HH, Bongers EM, Yap Z, Oud MM, Antony D, Duijkers L, Emes RD, Stalker J, Yntema JB, Plagnol V, Hoischen A, Gilissen C, Forsythe E, Lausch E, et al. Exome sequencing identifies DYNC2H1 mutations as a common cause of asphyxiating thoracic dystrophy (Jeune syndrome) without major polydactyly, renal or retinal involvement. Journal of Medical Genetics. 50: 309-23. PMID 23456818 DOI: 10.1136/Jmedgenet-2012-101284  0.316
2013 Rands CM, Darling A, Fujita M, Kong L, Webster MT, Clabaut C, Emes RD, Heger A, Meader S, Hawkins MB, Eisen MB, Teiling C, Affourtit J, Boese B, Grant PR, et al. Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. Bmc Genomics. 14: 95. PMID 23402223 DOI: 10.1186/1471-2164-14-95  0.369
2013 Onoufriadis A, Paff T, Antony D, Shoemark A, Micha D, Kuyt B, Schmidts M, Petridi S, Dankert-Roelse JE, Haarman EG, Daniels JM, Emes RD, Wilson R, Hogg C, Scambler PJ, et al. Splice-site mutations in the axonemal outer dynein arm docking complex gene CCDC114 cause primary ciliary dyskinesia. American Journal of Human Genetics. 92: 88-98. PMID 23261303 DOI: 10.1016/J.Ajhg.2012.11.002  0.326
2013 Nithianantharajah J, Komiyama NH, McKechanie A, Johnstone M, Blackwood DH, St Clair D, Emes RD, van de Lagemaat LN, Saksida LM, Bussey TJ, Grant SG. Synaptic scaffold evolution generated components of vertebrate cognitive complexity. Nature Neuroscience. 16: 16-24. PMID 23201973 DOI: 10.1038/Nn.3276  0.708
2013 Tarlinton RE, Barfoot HK, Allen CE, Brown K, Gifford RJ, Emes RD. Characterisation of a group of endogenous gammaretroviruses in the canine genome. Veterinary Journal (London, England : 1997). 196: 28-33. PMID 23021955 DOI: 10.1016/J.Tvjl.2012.08.011  0.311
2012 Shore A, Emes RD, Wessely F, Kemp P, Cillo C, D'Armiento M, Hoggard N, Lomax MA. A comparative approach to understanding tissue-specific expression of uncoupling protein 1 expression in adipose tissue. Frontiers in Genetics. 3: 304. PMID 23293654 DOI: 10.3389/Fgene.2012.00304  0.3
2012 Duong CV, Emes RD, Wessely F, Yacqub-Usman K, Clayton RN, Farrell WE. Quantitative, genome-wide analysis of the DNA methylome in sporadic pituitary adenomas. Endocrine-Related Cancer. 19: 805-16. PMID 23045325 DOI: 10.1530/Erc-12-0251  0.356
2012 Brown K, Moreton J, Malla S, Aboobaker AA, Emes RD, Tarlinton RE. Characterisation of retroviruses in the horse genome and their transcriptional activity via transcriptome sequencing. Virology. 433: 55-63. PMID 22868041 DOI: 10.1016/J.Virol.2012.07.010  0.344
2012 Smith SA, Jann OC, Haig D, Russell GC, Werling D, Glass EJ, Emes RD. Adaptive evolution of Toll-like receptor 5 in domesticated mammals. Bmc Evolutionary Biology. 12: 122. PMID 22827462 DOI: 10.1186/1471-2148-12-122  0.308
2012 Emes RD, Grant SG. Evolution of synapse complexity and diversity. Annual Review of Neuroscience. 35: 111-31. PMID 22715880 DOI: 10.1146/Annurev-Neuro-062111-150433  0.566
2012 Emes RD, Farrell WE. Make way for the 'next generation': application and prospects for genome-wide, epigenome-specific technologies in endocrine research. Journal of Molecular Endocrinology. 49: R19-27. PMID 22525352 DOI: 10.1530/Jme-12-0045  0.338
2012 Emes RD. The Logic of Evolution: Review of the Logic of Chance by Eugene V. Koonin Frontiers in Genetics. 3. DOI: 10.3389/Fgene.2012.00135  0.346
2011 Dhawi AA, Elazomi A, Jones MA, Lovell MA, Li H, Emes RD, Barrow PA. Adaptation to the chicken intestine in Salmonella Enteritidis PT4 studied by transcriptional analysis. Veterinary Microbiology. 153: 198-204. PMID 21831537 DOI: 10.1016/J.Vetmic.2011.07.013  0.342
2011 Emes RD, Grant SG. The human postsynaptic density shares conserved elements with proteomes of unicellular eukaryotes and prokaryotes. Frontiers in Neuroscience. 5: 44. PMID 21503141 DOI: 10.3389/Fnins.2011.00044  0.594
2011 Brown K, Louis E, Emes RD, Tarlinton R. Endogenous retroviruses in primates Retrovirology. 8. DOI: 10.1186/1742-4690-8-S2-P7  0.347
2009 Castleman VH, Romio L, Chodhari R, Hirst RA, de Castro SC, Parker KA, Ybot-Gonzalez P, Emes RD, Wilson SW, Wallis C, Johnson CA, Herrera RJ, Rutman A, Dixon M, Shoemark A, et al. Mutations in radial spoke head protein genes RSPH9 and RSPH4A cause primary ciliary dyskinesia with central-microtubular-pair abnormalities. American Journal of Human Genetics. 84: 197-209. PMID 19200523 DOI: 10.1016/J.Ajhg.2009.01.011  0.333
2009 Horrocks P, Wong E, Russell K, Emes RD. Control of gene expression in Plasmodium falciparum - ten years on. Molecular and Biochemical Parasitology. 164: 9-25. PMID 19110008 DOI: 10.1016/J.Molbiopara.2008.11.010  0.313
2008 Vamathevan JJ, Hasan S, Emes RD, Amrine-Madsen H, Rajagopalan D, Topp SD, Kumar V, Word M, Simmons MD, Foord SM, Sanseau P, Yang Z, Holbrook JD. The role of positive selection in determining the molecular cause of species differences in disease. Bmc Evolutionary Biology. 8: 273. PMID 18837980 DOI: 10.1186/1471-2148-8-273  0.319
2008 Emes RD. Inferring function from homology. Methods in Molecular Biology (Clifton, N.J.). 453: 149-68. PMID 18712301 DOI: 10.1007/978-1-60327-429-6_6  0.341
2008 Emes RD, Pocklington AJ, Anderson CN, Bayes A, Collins MO, Vickers CA, Croning MD, Malik BR, Choudhary JS, Armstrong JD, Grant SG. Evolutionary expansion and anatomical specialization of synapse proteome complexity. Nature Neuroscience. 11: 799-806. PMID 18536710 DOI: 10.1038/Nn.2135  0.579
2008 Emes RD, Yang Z. Duplicated paralogous genes subject to positive selection in the genome of Trypanosoma brucei. Plos One. 3: e2295. PMID 18509460 DOI: 10.1371/Journal.Pone.0002295  0.345
2008 Ryan TJ, Emes RD, Grant SG, Komiyama NH. Evolution of NMDA receptor cytoplasmic interaction domains: implications for organisation of synaptic signalling complexes. Bmc Neuroscience. 9: 6. PMID 18197970 DOI: 10.1186/1471-2202-9-6  0.712
2008 Ramm SA, Oliver PL, Ponting CP, Stockley P, Emes RD. Sexual selection and the adaptive evolution of mammalian ejaculate proteins. Molecular Biology and Evolution. 25: 207-19. PMID 18032407 DOI: 10.1093/Molbev/Msm242  0.31
2005 Wang WZ, Emes RD, Christoffers K, Verrall J, Blackshaw SE. Hirudo medicinalis: a platform for investigating genes in neural repair. Cellular and Molecular Neurobiology. 25: 427-40. PMID 16047550 DOI: 10.1007/S10571-005-3151-Y  0.316
2005 Laukaitis CM, Dlouhy SR, Emes RD, Ponting CP, Karn RC. Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus. Bmc Evolutionary Biology. 5: 40. PMID 16018816 DOI: 10.1186/1471-2148-5-40  0.317
2004 Emes RD, Riley MC, Laukaitis CM, Goodstadt L, Karn RC, Ponting CP. Comparative evolutionary genomics of androgen-binding protein genes. Genome Research. 14: 1516-29. PMID 15256509 DOI: 10.1101/Gr.2540304  0.373
2004 Emes RD, Beatson SA, Ponting CP, Goodstadt L. Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents. Genome Research. 14: 591-602. PMID 15060000 DOI: 10.1101/Gr.1940604  0.325
2004 Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Emes RD, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426  0.348
2004 Blackshaw SE, Babington EJ, Emes RD, Malek J, Wang WZ. Identifying genes for neuron survival and axon outgrowth in Hirudo medicinalis. Journal of Anatomy. 204: 13-24. PMID 14690474 DOI: 10.1111/J.1469-7580.2004.00260.X  0.31
2003 Emes RD, Goodstadt L, Winter EE, Ponting CP. Comparison of the genomes of human and mouse lays the foundation of genome zoology. Human Molecular Genetics. 12: 701-9. PMID 12651866 DOI: 10.1093/Hmg/Ddg078  0.366
2002 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, ... ... Emes RD, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/Nature01262  0.348
2002 Emes R, Thompson F, Moore J, Zang X, Devaney E. Cloning and characterisation of mmc-1, a microfilarial-specific gene, from Brugia pahangi International Journal For Parasitology. 32: 415-424. PMID 11849638 DOI: 10.1016/S0020-7519(02)00003-6  0.325
2001 Emes RD, Ponting CP. A new sequence motif linking lissencephaly, Treacher Collins and oral-facial-digital type 1 syndromes, microtubule dynamics and cell migration. Human Molecular Genetics. 10: 2813-20. PMID 11734546 DOI: 10.1093/Hmg/10.24.2813  0.312
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