| Year |
Citation |
Score |
| 2024 |
Niu Z, O'Farrell A, Li J, Reffsin S, Jain N, Dardani I, Goyal Y, Raj A. Piscis: a novel loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning. Biorxiv : the Preprint Server For Biology. PMID 38352551 DOI: 10.1101/2024.01.31.578123 |
0.442 |
|
| 2024 |
Jain N, Goyal Y, Dunagin MC, Cote CJ, Mellis IA, Emert B, Jiang CL, Dardani IP, Reffsin S, Arnett M, Yang W, Raj A. Retrospective identification of cell-intrinsic factors that mark pluripotency potential in rare somatic cells. Cell Systems. PMID 38335955 DOI: 10.1016/j.cels.2024.01.001 |
0.49 |
|
| 2023 |
Goyal Y, Busch GT, Pillai M, Li J, Boe RH, Grody EI, Chelvanambi M, Dardani IP, Emert B, Bodkin N, Braun J, Fingerman D, Kaur A, Jain N, Ravindran PT, et al. Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells. Nature. PMID 37468627 DOI: 10.1038/s41586-023-06342-8 |
0.596 |
|
| 2023 |
Richman LP, Goyal Y, Jiang CL, Raj A. ClonoCluster: A method for using clonal origin to inform transcriptome clustering. Cell Genomics. 3: 100247. PMID 36819662 DOI: 10.1016/j.xgen.2022.100247 |
0.422 |
|
| 2023 |
Jain N, Goyal Y, Dunagin MC, Cote CJ, Mellis IA, Emert B, Jiang CL, Dardani IP, Reffsin S, Raj A. Retrospective identification of intrinsic factors that mark pluripotency potential in rare somatic cells. Biorxiv : the Preprint Server For Biology. PMID 36798299 DOI: 10.1101/2023.02.10.527870 |
0.489 |
|
| 2022 |
Dardani I, Emert BL, Goyal Y, Jiang CL, Kaur A, Lee J, Rouhanifard SH, Alicea GM, Fane ME, Xiao M, Herlyn M, Weeraratna AT, Raj A. ClampFISH 2.0 enables rapid, scalable amplified RNA detection in situ. Nature Methods. PMID 36280724 DOI: 10.1038/s41592-022-01653-6 |
0.734 |
|
| 2022 |
Kiani K, Sanford EM, Goyal Y, Raj A. Changes in chromatin accessibility are not concordant with transcriptional changes for single-factor perturbations. Molecular Systems Biology. 18: e10979. PMID 36069349 DOI: 10.15252/msb.202210979 |
0.468 |
|
| 2022 |
Jiang CL, Goyal Y, Jain N, Wang Q, Truitt RE, Coté AJ, Emert B, Mellis IA, Kiani K, Yang W, Jain R, Raj A. Cell type determination for cardiac differentiation occurs soon after seeding of human-induced pluripotent stem cells. Genome Biology. 23: 90. PMID 35382863 DOI: 10.1186/s13059-022-02654-6 |
0.457 |
|
| 2022 |
Colonnetta MM, Goyal Y, Johnson HE, Syal S, Schedl P, Deshpande G. Preformation and epigenesis converge to specify primordial germ cell fate in the early Drosophila embryo. Plos Genetics. 18: e1010002. PMID 34986144 DOI: 10.1371/journal.pgen.1010002 |
0.33 |
|
| 2021 |
Mellis IA, Edelstein HI, Truitt R, Goyal Y, Beck LE, Symmons O, Dunagin MC, Linares Saldana RA, Shah PP, Pérez-Bermejo JA, Padmanabhan A, Yang W, Jain R, Raj A. Responsiveness to perturbations is a hallmark of transcription factors that maintain cell identity in vitro. Cell Systems. PMID 34352221 DOI: 10.1016/j.cels.2021.07.003 |
0.72 |
|
| 2021 |
Marmion RA, Yang L, Goyal Y, Jindal GA, Wetzel JL, Singh M, Schüpbach T, Shvartsman SY. Molecular mechanisms underlying cellular effects of human MEK1 mutations. Molecular Biology of the Cell. mbcE20100625. PMID 33476180 DOI: 10.1091/mbc.E20-10-0625 |
0.791 |
|
| 2020 |
Schuh L, Saint-Antoine M, Sanford EM, Emert BL, Singh A, Marr C, Raj A, Goyal Y. Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer. Cell Systems. 10: 363-378.e12. PMID 32325034 DOI: 10.1016/J.Cels.2020.03.004 |
0.516 |
|
| 2020 |
Paul S, Yang L, Mattingly H, Goyal Y, Shvartsman SY, Veraksa A. Activation-induced substrate engagement in ERK signaling. Molecular Biology of the Cell. mbcE19070355. PMID 31913744 DOI: 10.1091/Mbc.E19-07-0355 |
0.777 |
|
| 2018 |
Goyal Y, Schüpbach T, Shvartsman SY. A quantitative model of developmental RTK signaling. Developmental Biology. PMID 30026122 DOI: 10.1016/J.Ydbio.2018.07.012 |
0.775 |
|
| 2017 |
Jindal GA, Goyal Y, Humphreys JM, Yeung E, Tian K, Patterson VL, He H, Burdine RD, Shvartsman SY, Goldsmith EJ. How activating mutations affect MEK1 regulation and function. The Journal of Biological Chemistry. PMID 29018093 DOI: 10.1074/Jbc.C117.806067 |
0.784 |
|
| 2017 |
Cuellar TL, Herzner AM, Zhang X, Goyal Y, Watanabe C, Friedman BA, Janakiraman V, Durinck S, Stinson J, Arnott D, Cheung TK, Chaudhuri S, Modrusan Z, Doerr JM, Classon M, et al. ---Silencing of retrotransposons by SETDB1 inhibits the interferon response in acute myeloid leukemia-. The Journal of Cell Biology. PMID 28887438 DOI: 10.1083/Jcb.201612160 |
0.309 |
|
| 2017 |
Goyal Y, Levario TJ, Mattingly HH, Holmes S, Shvartsman SY, Lu H. Parallel imaging of Drosophila embryos for quantitative analysis of genetic perturbations of the Ras pathway. Disease Models & Mechanisms. PMID 28495673 DOI: 10.1242/Dmm.030163 |
0.795 |
|
| 2017 |
Rogers WA, Goyal Y, Yamaya K, Shvartsman SY, Levine MS. Uncoupling neurogenic gene networks in the Drosophila embryo. Genes & Development. PMID 28428262 DOI: 10.1101/Gad.297150.117 |
0.584 |
|
| 2017 |
Goyal Y, Jindal GA, Pelliccia JL, Yamaya K, Yeung E, Futran AS, Burdine RD, Schüpbach T, Shvartsman SY. Divergent effects of intrinsically active MEK variants on developmental Ras signaling. Nature Genetics. PMID 28166211 DOI: 10.1038/Ng.3780 |
0.74 |
|
| 2017 |
Johnson HE, Goyal Y, Pannucci NL, Schüpbach T, Shvartsman SY, Toettcher JE. The Spatiotemporal Limits of Developmental Erk Signaling. Developmental Cell. 40: 185-192. PMID 28118601 DOI: 10.1016/J.Mod.2017.04.131 |
0.753 |
|
| 2017 |
Jindal GA, Goyal Y, Yamaya K, Futran AS, Kountouridis I, Balgobin CA, Schüpbach T, Burdine RD, Shvartsman SY. In vivo severity ranking of Ras pathway mutations associated with developmental disorders. Proceedings of the National Academy of Sciences of the United States of America. PMID 28049852 DOI: 10.1073/Pnas.1615651114 |
0.722 |
|
| 2015 |
Jenni S, Goyal Y, von Grotthuss M, Shvartsman SY, Klein DE. Structural Basis of Neurohormone Perception by the Receptor Tyrosine Kinase Torso. Molecular Cell. 60: 941-52. PMID 26698662 DOI: 10.1016/J.Molcel.2015.10.026 |
0.554 |
|
| 2015 |
Jindal GA, Goyal Y, Burdine RD, Rauen KA, Shvartsman SY. RASopathies: unraveling mechanisms with animal models. Disease Models & Mechanisms. 8: 1167. PMID 26398161 DOI: 10.1242/Dmm.022442 |
0.718 |
|
| 2015 |
Jindal GA, Goyal Y, Burdine RD, Rauen KA, Shvartsman SY. RASopathies: unraveling mechanisms with animal models. Disease Models & Mechanisms. 8: 769-82. PMID 26203125 DOI: 10.1242/Dmm.020339 |
0.793 |
|
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