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Junyue Cao, Ph.D. - Publications

Affiliations: 
2020- Rockefeller University, New York, NY, United States 
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zhang Z, Schaefer C, Jiang W, Lu Z, Lee J, Sziraki A, Abdulraouf A, Wick B, Haeussler M, Li Z, Molla G, Satija R, Zhou W, Cao J. A Panoramic View of Cell Population Dynamics in Mammalian Aging. Biorxiv : the Preprint Server For Biology. PMID 38496474 DOI: 10.1101/2024.03.01.583001  0.33
2024 Qiu C, Martin BK, Welsh IC, Daza RM, Le TM, Huang X, Nichols EK, Taylor ML, Fulton O, O'Day DR, Gomes AR, Ilcisin S, Srivatsan S, Deng X, Disteche CM, ... ... Cao J, et al. A single-cell time-lapse of mouse prenatal development from gastrula to birth. Nature. PMID 38355799 DOI: 10.1038/s41586-024-07069-w  0.649
2024 Abadie K, Clark EC, Valanparambil RM, Ukogu O, Yang W, Daza RM, Ng KKH, Fathima J, Wang AL, Lee J, Nasti TH, Bhandoola A, Nourmohammad A, Ahmed R, Shendure J, ... Cao J, et al. Reversible, tunable epigenetic silencing of TCF1 generates flexibility in the T cell memory decision. Immunity. PMID 38301652 DOI: 10.1016/j.immuni.2023.12.006  0.47
2023 Sziraki A, Lu Z, Lee J, Banyai G, Anderson S, Abdulraouf A, Metzner E, Liao A, Banfelder J, Epstein A, Schaefer C, Xu Z, Zhang Z, Gan L, Nelson PT, ... ... Cao J, et al. A global view of aging and Alzheimer's pathogenesis-associated cell population dynamics and molecular signatures in human and mouse brains. Nature Genetics. PMID 38036784 DOI: 10.1038/s41588-023-01572-y  0.443
2023 Huang X, Henck J, Qiu C, Sreenivasan VKA, Balachandran S, Amarie OV, Hrabě de Angelis M, Behncke RY, Chan WL, Despang A, Dickel DE, Duran M, Feuchtinger A, Fuchs H, Gailus-Durner V, ... ... Cao J, et al. Single-cell, whole-embryo phenotyping of mammalian developmental disorders. Nature. PMID 37968388 DOI: 10.1038/s41586-023-06548-w  0.597
2023 Sziraki A, Zhong Y, Neltner AM, Niedowicz D, Rogers CB, Wilcock DM, Nehra G, Neltner JH, Smith RR, Hartz AM, Cao J, Nelson PT. A high-throughput single-cell RNA expression profiling method identifies human pericyte markers. Neuropathology and Applied Neurobiology. e12942. PMID 37812061 DOI: 10.1111/nan.12942  0.418
2023 Lu Z, Zhang M, Lee J, Sziraki A, Anderson S, Zhang Z, Xu Z, Jiang W, Ge S, Nelson PT, Zhou W, Cao J. Tracking cell-type-specific temporal dynamics in human and mouse brains. Cell. 186: 4345-4364.e24. PMID 37774676 DOI: 10.1016/j.cell.2023.08.042  0.427
2023 Xu Z, Sziraki A, Lee J, Zhou W, Cao J. Dissecting key regulators of transcriptome kinetics through scalable single-cell RNA profiling of pooled CRISPR screens. Nature Biotechnology. PMID 37749268 DOI: 10.1038/s41587-023-01948-9  0.377
2023 Qiu C, Martin BK, Welsh IC, Daza RM, Le TM, Huang X, Nichols EK, Taylor ML, Fulton O, Oâ Day DR, Gomes AR, Ilcisin S, Srivatsan S, Deng X, Disteche CM, ... ... Cao J, et al. A single-cell transcriptional timelapse of mouse embryonic development, from gastrula to pup. Biorxiv : the Preprint Server For Biology. PMID 37066300 DOI: 10.1101/2023.04.05.535726  0.65
2023 Xu Z, Sziraki A, Lee J, Zhou W, Cao J. : Dissecting key regulators of transcriptome kinetics through scalable single-cell RNA profiling of pooled CRISPR screens. Biorxiv : the Preprint Server For Biology. PMID 36778497 DOI: 10.1101/2023.01.29.526143  0.348
2022 Martin BK, Qiu C, Nichols E, Phung M, Green-Gladden R, Srivatsan S, Blecher-Gonen R, Beliveau BJ, Trapnell C, Cao J, Shendure J. Optimized single-nucleus transcriptional profiling by combinatorial indexing. Nature Protocols. PMID 36261634 DOI: 10.1038/s41596-022-00752-0  0.582
2022 Pattwell SS, Arora S, Nuechterlein N, Zager M, Loeb KR, Cimino PJ, Holland NC, Reche-Ley N, Bolouri H, Almiron Bonnin DA, Szulzewsky F, Phadnis VV, Ozawa T, Wagner MJ, Haffner MC, ... Cao J, et al. Oncogenic role of a developmentally regulated splice variant. Science Advances. 8: eabo6789. PMID 36206341 DOI: 10.1126/sciadv.abo6789  0.444
2022 Qiu C, Cao J, Martin BK, Li T, Welsh IC, Srivatsan S, Huang X, Calderon D, Noble WS, Disteche CM, Murray SA, Spielmann M, Moens CB, Trapnell C, Shendure J. Systematic reconstruction of cellular trajectories across mouse embryogenesis. Nature Genetics. 54: 328-341. PMID 35288709 DOI: 10.1038/s41588-022-01018-x  0.667
2020 Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R, Zhang F, Spielmann M, Palis J, Doherty D, Steemers FJ, Glass IA, et al. A human cell atlas of fetal gene expression. Science (New York, N.Y.). 370. PMID 33184181 DOI: 10.1126/science.aba7721  0.663
2020 Domcke S, Hill AJ, Daza RM, Cao J, O'Day DR, Pliner HA, Aldinger KA, Pokholok D, Zhang F, Milbank JH, Zager MA, Glass IA, Steemers FJ, Doherty D, Trapnell C, et al. A human cell atlas of fetal chromatin accessibility. Science (New York, N.Y.). 370. PMID 33184180 DOI: 10.1126/science.aba7612  0.76
2020 Zhang Y, Sohn C, Lee S, Ahn H, Seo J, Cao J, Cai L. Detecting protein and post-translational modifications in single cells with iDentification and qUantification sEparaTion (DUET). Communications Biology. 3: 420. PMID 32747637 DOI: 10.1038/s42003-020-01132-8  0.407
2020 Cao J, Zhou W, Steemers F, Trapnell C, Shendure J. Sci-fate characterizes the dynamics of gene expression in single cells. Nature Biotechnology. PMID 32284584 DOI: 10.1038/S41587-020-0480-9  0.692
2019 Srivatsan SR, McFaline-Figueroa JL, Ramani V, Saunders L, Cao J, Packer J, Pliner HA, Jackson DL, Daza RM, Christiansen L, Zhang F, Steemers F, Shendure J, Trapnell C. Massively multiplex chemical transcriptomics at single cell resolution. Science (New York, N.Y.). PMID 31806696 DOI: 10.1126/Science.Aax6234  0.693
2019 Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L, Steemers FJ, Trapnell C, Shendure J. The single-cell transcriptional landscape of mammalian organogenesis. Nature. PMID 30787437 DOI: 10.1038/S41586-019-0969-X  0.701
2018 Cao J, Cusanovich DA, Ramani V, Aghamirzaie D, Pliner HA, Hill AJ, Daza RM, McFaline-Figueroa JL, Packer JS, Christiansen L, Steemers FJ, Adey AC, Trapnell C, Shendure J. Joint profiling of chromatin accessibility and gene expression in thousands of single cells. Science (New York, N.Y.). PMID 30166440 DOI: 10.1126/Science.Aau0730  0.672
2017 Cao J, Packer J, Waterston R, Trapnell C, Shendure J, Rajaram S, Wu LF, Altschuler SJ, Liang J, O'Brien LE, Eizenberg-Magar I, Rimer J, Friedman N, Metzl-Raz E, Kafri M, et al. Principles of Systems Biology, No. 21 : Editorial Cell Systems. 5: 158-160. PMID 28957648 DOI: 10.1016/J.Cels.2017.09.005  0.439
2017 Cao J, Packer JS, Ramani V, Cusanovich DA, Huynh C, Daza R, Qiu X, Lee C, Furlan SN, Steemers FJ, Adey A, Waterston RH, Trapnell C, Shendure J. Comprehensive single-cell transcriptional profiling of a multicellular organism. Science (New York, N.Y.). 357: 661-667. PMID 28818938 DOI: 10.1126/Science.Aam8940  0.666
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