David Baker - Publications

Affiliations: 
 

500 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Liang HC, Costanza M, Prutsch N, Zimmerman MW, Gurnhofer E, Montes-Mojarro IA, Abraham BJ, Prokoph N, Stoiber S, Tangermann S, Lobello C, Oppelt J, Anagnostopoulos I, Hielscher T, Pervez S, ... Baker D, et al. Super-enhancer-based identification of a BATF3/IL-2R-module reveals vulnerabilities in anaplastic large cell lymphoma. Nature Communications. 12: 5577. PMID 34552066 DOI: 10.1038/s41467-021-25379-9  1
2021 Woodall NB, Weinberg Z, Park J, Busch F, Johnson RS, Feldbauer MJ, Murphy M, Ahlrichs M, Yousif I, MacCoss MJ, Wysocki VH, El-Samad H, Baker D. De novo design of tyrosine and serine kinase-driven protein switches. Nature Structural & Molecular Biology. 28: 762-770. PMID 34518698 DOI: 10.1038/s41594-021-00649-8  1
2021 Wołoszyn P, Baumberg I, Baker D. The high impulse, palm lift technique for chest compression: Prospective, experimental, pilot study. The American Journal of Emergency Medicine. 50: 345-351. PMID 34454397 DOI: 10.1016/j.ajem.2021.08.030  1
2021 Braun KM, Moreno GK, Wagner C, Accola MA, Rehrauer WM, Baker DA, Koelle K, O'Connor DH, Bedford T, Friedrich TC, Moncla LH. Acute SARS-CoV-2 infections harbor limited within-host diversity and transmit via tight transmission bottlenecks. Plos Pathogens. 17: e1009849. PMID 34424945 DOI: 10.1371/journal.ppat.1009849  1
2021 Naidu SS, Baron SJ, Eng MH, Sathanandam SK, Zidar DA, Feldman DN, Ing FF, Latif F, Lim MJ, Henry TD, Rao SV, Dangas GD, Hermiller JB, Daggubati R, Shah B, ... ... Baker D, et al. Hot topics in interventional cardiology: Proceedings from the society for cardiovascular angiography and interventions (SCAI) 2021 think tank. Catheterization and Cardiovascular Interventions : Official Journal of the Society For Cardiac Angiography & Interventions. PMID 34398509 DOI: 10.1002/ccd.29898  1
2021 Baker D, Asardag AN, Quinn OA, Efimov A, Kang AS. Anti-drug antibodies to antibody-based therapeutics in multiple sclerosis. Human Antibodies. PMID 34397407 DOI: 10.3233/HAB-210453  1
2021 Antanasijevic A, Sewall LM, Cottrell CA, Carnathan DG, Jimenez LE, Ngo JT, Silverman JB, Groschel B, Georgeson E, Bhiman J, Bastidas R, LaBranche C, Allen JD, Copps J, Perrett HR, ... ... Baker D, et al. Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM. Nature Communications. 12: 4817. PMID 34376662 DOI: 10.1038/s41467-021-25087-4  1
2021 Giovannoni G, Hawkes CH, Lechner-Scott J, Levy M, Yeh EA, Baker D. COVID-19 vaccines and multiple sclerosis disease-modifying therapies. Multiple Sclerosis and Related Disorders. 53: 103155. PMID 34358943 DOI: 10.1016/j.msard.2021.103155  1
2021 Anishchenko I, Baek M, Park H, Hiranuma N, Kim DE, Dauparas J, Mansoor S, Humphreys IR, Baker D. Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14. Proteins. PMID 34331359 DOI: 10.1002/prot.26194  1
2021 Ten Dijke P, Baker D. Fine-tuning ALK1 linear polyubiquitination to control angiogenesis. Trends in Cell Biology. PMID 34330579 DOI: 10.1016/j.tcb.2021.07.004  1
2021 Leifer D, Fonarow GC, Hellkamp A, Baker D, Hoh BL, Prabhakaran S, Schoeberl M, Suter R, Washington C, Williams S, Xian Y, Schwamm LH. Association Between Hospital Volumes and Clinical Outcomes for Patients With Nontraumatic Subarachnoid Hemorrhage. Journal of the American Heart Association. e018373. PMID 34325522 DOI: 10.1161/JAHA.120.018373  1
2021 Guye KN, Shen H, Yaman MY, Liao GY, Baker D, Ginger DS. Importance of Substrate-Particle Repulsion for Protein-Templated Assembly of Metal Nanoparticles. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 34309385 DOI: 10.1021/acs.langmuir.1c01194  1
2021 Moynihan MA, Goodkin NF, Morgan KM, Kho PYY, Lopes Dos Santos A, Lauro FM, Baker DM, Martin P. Coral-associated nitrogen fixation rates and diazotrophic diversity on a nutrient-replete equatorial reef. The Isme Journal. PMID 34294880 DOI: 10.1038/s41396-021-01054-1  1
2021 Baek M, DiMaio F, Anishchenko I, Dauparas J, Ovchinnikov S, Lee GR, Wang J, Cong Q, Kinch LN, Schaeffer RD, Millán C, Park H, Adams C, Glassman CR, DeGiovanni A, ... ... Baker D, et al. Accurate prediction of protein structures and interactions using a three-track neural network. Science (New York, N.Y.). PMID 34282049 DOI: 10.1126/science.abj8754  1
2021 Bryan CM, Rocklin GJ, Bick MJ, Ford A, Majri-Morrison S, Kroll AV, Miller CJ, Carter L, Goreshnik I, Kang A, DiMaio F, Tarbell KV, Baker D. Computational design of a synthetic PD-1 agonist. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34272285 DOI: 10.1073/pnas.2102164118  1
2021 Romero-Romero S, Costas M, Silva Manzano DA, Kordes S, Rojas-Ortega E, Tapia C, Guerra Y, Shanmugaratnam S, Rodríguez-Romero A, Baker D, Höcker B, Alejandro Fernández-Velasco D. The stability landscape of de novo TIM barrels explored by a modular design approach. Journal of Molecular Biology. 167153. PMID 34271011 DOI: 10.1016/j.jmb.2021.167153  0.01
2021 Hunt AC, Case JB, Park YJ, Cao L, Wu K, Walls AC, Liu Z, Bowen JE, Yeh HW, Saini S, Helms L, Zhao YT, Hsiang TY, Starr TN, Goreshnik I, ... Baker D, et al. Multivalent designed proteins protect against SARS-CoV-2 variants of concern. Biorxiv : the Preprint Server For Biology. PMID 34268509 DOI: 10.1101/2021.07.07.451375  1
2021 Grulich AE, Jin F, Bavinton BR, Yeung B, Hammoud MA, Amin J, Cabrera G, Clackett S, Ogilvie E, Vaccher S, Vickers T, McNulty A, Smith DJ, Dharan NJ, Selvey C, ... Baker DA, et al. Long-term protection from HIV infection with oral HIV pre-exposure prophylaxis in gay and bisexual men: findings from the expanded and extended EPIC-NSW prospective implementation study. The Lancet. Hiv. PMID 34217426 DOI: 10.1016/S2352-3018(21)00074-6  1
2021 Hurley MJ, Deacon RMJ, Chan AWE, Baker D, Selwood DL, Cogram P. Reversal of behavioural phenotype by the cannabinoid-like compound VSN16R in fragile X syndrome mice. Brain : a Journal of Neurology. PMID 34196695 DOI: 10.1093/brain/awab246  1
2021 Case JB, Chen RE, Cao L, Ying B, Winkler ES, Johnson M, Goreshnik I, Pham MN, Shrihari S, Kafai NM, Bailey AL, Xie X, Shi PY, Ravichandran R, Carter L, ... Baker D, et al. Ultrapotent miniproteins targeting the SARS-CoV-2 receptor-binding domain protect against infection and disease. Cell Host & Microbe. PMID 34192518 DOI: 10.1016/j.chom.2021.06.008  1
2021 Zhang JZ, Yeh HW, Walls AC, Wicky BIM, Sprouse K, VanBlargan LA, Treger R, Quijano-Rubio A, Pham MN, Kraft JC, Haydon IC, Yang W, DeWitt M, Chow C, Carter L, ... Baker D, et al. Detection of antibodies neutralizing historical and emerging SARS-CoV-2 strains using a thermodynamically coupled de novo biosensor system. Biorxiv : the Preprint Server For Biology. PMID 34189528 DOI: 10.1101/2021.06.22.449355  1
2021 Page AJ, Mather AE, Le-Viet T, Meader EJ, Alikhan NF, Kay GL, de Oliveira Martins L, Aydin A, Baker DJ, Trotter AJ, Rudder S, Tedim AP, Kolyva A, Stanley R, Yasir M, et al. Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management. Microbial Genomics. 7. PMID 34184982 DOI: 10.1099/mgen.0.000589  1
2021 Wellington Miranda S, Cong Q, Schaefer AL, MacLeod EK, Zimenko A, Baker D, Greenberg EP. A covariation analysis reveals elements of selectivity in quorum sensing systems. Elife. 10. PMID 34180398 DOI: 10.7554/eLife.69169  1
2021 Prelesnik JL, Alberstein RG, Zhang S, Pyles H, Baker D, Pfaendtner J, De Yoreo JJ, Tezcan FA, Remsing RC, Mundy CJ. Ion-dependent protein-surface interactions from intrinsic solvent response. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34172582 DOI: 10.1073/pnas.2025121118  1
2021 Koga N, Koga R, Liu G, Castellanos J, Montelione GT, Baker D. Role of backbone strain in de novo design of complex α/β protein structures. Nature Communications. 12: 3921. PMID 34168113 DOI: 10.1038/s41467-021-24050-7  1
2021 Bqain M, Efimov A, Baker D, Kang AS. Immunogenicity of biologics used in the treatment of inflammatory bowel disease: A review. Human Antibodies. PMID 34151784 DOI: 10.3233/HAB-210449  1
2021 Patel V, Efimov A, Baker D, Kang AS. Immunogenicity of biologics used in the treatment of moderate to severe psoriasis. Human Antibodies. PMID 34151782 DOI: 10.3233/HAB-210447  1
2021 Heffron AS, McIlwain SJ, Amjadi MF, Baker DA, Khullar S, Armbrust T, Halfmann PJ, Kawaoka Y, Sethi AK, Palmenberg AC, Shelef MA, O'Connor DH, Ong IM. The landscape of antibody binding in SARS-CoV-2 infection. Plos Biology. 19: e3001265. PMID 34143766 DOI: 10.1371/journal.pbio.3001265  1
2021 Imai M, Halfmann PJ, Yamayoshi S, Iwatsuki-Horimoto K, Chiba S, Watanabe T, Nakajima N, Ito M, Kuroda M, Kiso M, Maemura T, Takahashi K, Loeber S, Hatta M, Koga M, ... Baker DA, et al. Characterization of a new SARS-CoV-2 variant that emerged in Brazil. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34140350 DOI: 10.1073/pnas.2106535118  1
2021 Baker DW. Breaking Links in the Chain of Racial Disparities for COVID-19. Jama Network Open. 4: e2112879. PMID 34137834 DOI: 10.1001/jamanetworkopen.2021.12879  0.01
2021 Yaman MY, Guye KN, Ziatdinov M, Shen H, Baker D, Kalinin SV, Ginger DS. Alignment of Au nanorods along designed protein nanofibers studied with automated image analysis. Soft Matter. PMID 34128040 DOI: 10.1039/d1sm00645b  1
2021 Baker D, Hadjicharalambous C, Gnanapavan S, Giovannoni G. Can rheumatologists stop causing demyelinating disease? Multiple Sclerosis and Related Disorders. 53: 103057. PMID 34126373 DOI: 10.1016/j.msard.2021.103057  1
2021 Baker DW. Improving the Quality and Safety of Telehealth: A Call for Papers on Telehealth. Joint Commission Journal On Quality and Patient Safety. PMID 34120876 DOI: 10.1016/j.jcjq.2021.05.002  0.01
2021 Hall MD, Anderson JM, Anderson A, Baker D, Bradner J, Brimacombe KR, Campbell EA, Corbett KS, Carter K, Cherry S, Chiang L, Cihlar T, de Wit E, Denison M, Disney M, et al. Report of the National Institutes of Health SARS-CoV-2 Antiviral Therapeutics Summit. The Journal of Infectious Diseases. PMID 34111271 DOI: 10.1093/infdis/jiab305  0.01
2021 Dharan NJ, Yeh P, Bloch M, Yeung MM, Baker D, Guinto J, Roth N, Ftouni S, Ognenovska K, Smith D, Hoy JF, Woolley I, Pell C, Templeton DJ, Fraser N, et al. HIV is associated with an increased risk of age-related clonal hematopoiesis among older adults. Nature Medicine. PMID 34099923 DOI: 10.1038/s41591-021-01357-y  1
2021 Hosseinzadeh P, Watson PR, Craven TW, Li X, Rettie S, Pardo-Avila F, Bera AK, Mulligan VK, Lu P, Ford AS, Weitzner BD, Stewart LJ, Moyer AP, Di Piazza M, Whalen JG, ... Baker D, et al. Anchor extension: a structure-guided approach to design cyclic peptides targeting enzyme active sites. Nature Communications. 12: 3384. PMID 34099674 DOI: 10.1038/s41467-021-23609-8  1
2021 Conti-Jerpe IE, Thompson PD, Wong CWM, Oliveira NL, Duprey NN, Moynihan MA, Baker DM. Response to Comment on Trophic strategy and bleaching resistance in reef-building corals. Science Advances. 7. PMID 34078610 DOI: 10.1126/sciadv.abi8666  1
2021 Röthig T, Puntin G, Wong JCY, Burian A, McLeod W, Baker DM. Holobiont nitrogen control and its potential for eutrophication resistance in an obligate photosymbiotic jellyfish. Microbiome. 9: 127. PMID 34078452 DOI: 10.1186/s40168-021-01075-0  1
2021 Vulovic I, Yao Q, Park YJ, Courbet A, Norris A, Busch F, Sahasrabuddhe A, Merten H, Sahtoe DD, Ueda G, Fallas JA, Weaver SJ, Hsia Y, Langan RA, Plückthun A, ... Baker D, et al. Generation of ordered protein assemblies using rigid three-body fusion. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34074752 DOI: 10.1073/pnas.2015037118  1
2021 Baker DR, Cadet K, Mani S. COVID-19 Testing and Social Determinants of Health Among Disadvantaged Baltimore Neighborhoods: A Community Mobile Health Clinic Outreach Model. Population Health Management. PMID 34030489 DOI: 10.1089/pop.2021.0066  0.01
2021 Weinberg ZY, Hilburger CE, Kim M, Cao L, Khalid M, Elmes S, Diwanji D, Hernandez E, Lopez J, Schaefer K, Smith AM, Zhou F, Renuka Kumar G, Ott M, ... Baker D, et al. Sentinel cells enable genetic detection of SARS-CoV-2 Spike protein. Biorxiv : the Preprint Server For Biology. PMID 33907743 DOI: 10.1101/2021.04.20.440678  0.01
2021 Sahtoe DD, Coscia A, Mustafaoglu N, Miller LM, Olal D, Vulovic I, Yu TY, Goreshnik I, Lin YR, Clark L, Busch F, Stewart L, Wysocki VH, Ingber DE, Abraham J, ... Baker D, et al. Transferrin receptor targeting by de novo sheet extension. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33879614 DOI: 10.1073/pnas.2021569118  1
2021 Hsia Y, Mout R, Sheffler W, Edman NI, Vulovic I, Park YJ, Redler RL, Bick MJ, Bera AK, Courbet A, Kang A, Brunette TJ, Nattermann U, Tsai E, Saleem A, ... ... Baker D, et al. Design of multi-scale protein complexes by hierarchical building block fusion. Nature Communications. 12: 2294. PMID 33863889 DOI: 10.1038/s41467-021-22276-z  1
2021 Kalinin SV, Zhang S, Valleti M, Pyles H, Baker D, De Yoreo JJ, Ziatdinov M. Disentangling Rotational Dynamics and Ordering Transitions in a System of Self-Organizing Protein Nanorods Rotationally Invariant Latent Representations. Acs Nano. 15: 6471-6480. PMID 33861068 DOI: 10.1021/acsnano.0c08914  1
2021 Braun KM, Moreno GK, Buys A, Somsen ED, Bobholz M, Accola MA, Anderson L, Rehrauer WM, Baker DA, Safdar N, Lepak AJ, O'Connor DH, Friedrich TC. Viral sequencing reveals US healthcare personnel rarely become infected with SARS-CoV-2 through patient contact. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33857303 DOI: 10.1093/cid/ciab281  1
2021 Bougnères P, Porcher R, Esterle L, Baker D, de la Vaissière A, Meurisse S, Valtat S, Castell AL, Mouriquand P, Valleron AJ. Exploring the risk of hypospadias in children born from mothers living close to a vineyard. Plos One. 16: e0249800. PMID 33857192 DOI: 10.1371/journal.pone.0249800  0.01
2021 Bavinton BR, Vaccher S, Jin F, Prestage GP, Holt M, Zablotska-Manos IB, Guy R, Amin J, Templeton DJ, Yeung B, Hammoud MA, Lewis D, Baker D, Dharan N, McNulty AM, et al. High levels of prevention-effective adherence to HIV pre-exposure prophylaxis (PrEP): An analysis of sub-study data from the EPIC-NSW trial. Journal of Acquired Immune Deficiency Syndromes (1999). PMID 33852503 DOI: 10.1097/QAI.0000000000002691  1
2021 Schmierer K, Sorensen PS, Baker D. Highly effective disease-modifying treatment as initial MS therapy. Current Opinion in Neurology. PMID 33840776 DOI: 10.1097/WCO.0000000000000937  1
2021 Kohan HG, Baker DM, Sani S, Bielecki-Wilken KA, Ramirez A. In Vitro Permeability, Irritability, and Release Evaluation of Commonly Used Topical Diclofenac Gel Preparations (1%, 5%, and 10%). International Journal of Pharmaceutical Compounding. 25: 146-155. PMID 33798114  0.01
2021 Divine R, Dang HV, Ueda G, Fallas JA, Vulovic I, Sheffler W, Saini S, Zhao YT, Raj IX, Morawski PA, Jennewein MF, Homad LJ, Wan YH, Tooley MR, Seeger F, ... ... Baker D, et al. Designed proteins assemble antibodies into modular nanocages. Science (New York, N.Y.). 372. PMID 33795432 DOI: 10.1126/science.abd9994  1
2021 Bedarf JR, Beraza N, Khazneh H, Özkurt E, Baker D, Borger V, Wüllner U, Hildebrand F. Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson's disease individuals. Microbiome. 9: 75. PMID 33771222 DOI: 10.1186/s40168-021-01012-1  1
2021 Boyoglu-Barnum S, Ellis D, Gillespie RA, Hutchinson GB, Park YJ, Moin SM, Acton OJ, Ravichandran R, Murphy M, Pettie D, Matheson N, Carter L, Creanga A, Watson MJ, Kephart S, ... Baker D, et al. Quadrivalent influenza nanoparticle vaccines induce broad protection. Nature. PMID 33762730 DOI: 10.1038/s41586-021-03365-x  1
2021 Balestra AC, Koussis K, Klages N, Howell SA, Flynn HR, Bantscheff M, Pasquarello C, Perrin AJ, Brusini L, Arboit P, Sanz O, Castaño LP, Withers-Martinez C, Hainard A, Ghidelli-Disse S, ... Baker DA, et al. Ca signals critical for egress and gametogenesis in malaria parasites depend on a multipass membrane protein that interacts with PKG. Science Advances. 7. PMID 33762339 DOI: 10.1126/sciadv.abe5396  1
2021 Galvin SG, Larraufie P, Kay RG, Pitt H, Bernard E, McGavigan AK, Brandt H, Hood J, Sheldrake L, Conder S, Atherton-Kemp D, Lu VB, O'Flaherty EAA, Roberts GP, Ämmälä C, ... ... Baker D, et al. Peptidomics of enteroendocrine cells and characterisation of potential effects of a novel preprogastrin derived-peptide on glucose tolerance in lean mice. Peptides. 170532. PMID 33744371 DOI: 10.1016/j.peptides.2021.170532  1
2021 Kim T, Lee JCY, Kang DH, Duprey NN, Leung KS, Archana A, Baker DM. Modification of fatty acid profile and biosynthetic pathway in symbiotic corals under eutrophication. The Science of the Total Environment. 771: 145336. PMID 33736184 DOI: 10.1016/j.scitotenv.2021.145336  1
2021 Balana AT, Levine PM, Craven TW, Mukherjee S, Pedowitz NJ, Moon SP, Takahashi TT, Becker CFW, Baker D, Pratt MR. O-GlcNAc modification of small heat shock proteins enhances their anti-amyloid chaperone activity. Nature Chemistry. PMID 33723378 DOI: 10.1038/s41557-021-00648-8  1
2021 Mulligan VK, Workman S, Sun T, Rettie S, Li X, Worrall LJ, Craven TW, King DT, Hosseinzadeh P, Watkins AM, Renfrew PD, Guffy S, Labonte JW, Moretti R, Bonneau R, ... Baker D, et al. Computationally designed peptide macrocycle inhibitors of New Delhi metallo-β-lactamase 1. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33723038 DOI: 10.1073/pnas.2012800118  1
2021 Norn C, Wicky BIM, Juergens D, Liu S, Kim D, Tischer D, Koepnick B, Anishchenko I, Baker D, Ovchinnikov S. Protein sequence design by conformational landscape optimization. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33712545 DOI: 10.1073/pnas.2017228118  1
2021 Prall TM, Neumann EK, Karl JA, Shortreed CG, Baker DA, Bussan HE, Wiseman RW, O'Connor DH. Consistent ultra-long DNA sequencing with automated slow pipetting. Bmc Genomics. 22: 182. PMID 33711930 DOI: 10.1186/s12864-021-07500-w  1
2021 Case JB, Chen RE, Cao L, Ying B, Winkler ES, Goreshnik I, Shrihari S, Kafai NM, Bailey AL, Xie X, Shi PY, Ravichandran R, Carter L, Stewart L, Baker D, et al. Ultrapotent miniproteins targeting the receptor-binding domain protect against SARS-CoV-2 infection and disease in mice. Biorxiv : the Preprint Server For Biology. PMID 33688650 DOI: 10.1101/2021.03.01.433110  1
2021 Perrin AJ, Bisson C, Faull PA, Renshaw MJ, Lees RA, Fleck RA, Saibil HR, Snijders AP, Baker DA, Blackman MJ. Malaria Parasite Schizont Egress Antigen-1 Plays an Essential Role in Nuclear Segregation during Schizogony. Mbio. 12. PMID 33688001 DOI: 10.1128/mBio.03377-20  1
2021 Coventry B, Baker D. Protein sequence optimization with a pairwise decomposable penalty for buried unsatisfied hydrogen bonds. Plos Computational Biology. 17: e1008061. PMID 33684097 DOI: 10.1371/journal.pcbi.1008061  0.01
2021 Fernandez F, Baker DP, Fu YC, Munoz IG, Ford KS. A Symbiosis of Access: Proliferating STEM PhD Training in the U.S. from 1920-2010. Minerva. 59: 79-98. PMID 33664532 DOI: 10.1007/s11024-020-09422-5  0.01
2021 Ben-Sasson AJ, Watson JL, Sheffler W, Johnson MC, Bittleston A, Somasundaram L, Decarreau J, Jiao F, Chen J, Mela I, Drabek AA, Jarrett SM, Blacklow SC, Kaminski CF, Hura GL, ... Baker D, et al. Author Correction: Design of biologically active binary protein 2D materials. Nature. PMID 33654323 DOI: 10.1038/s41586-021-03331-7  1
2021 Hiranuma N, Park H, Baek M, Anishchenko I, Dauparas J, Baker D. Improved protein structure refinement guided by deep learning based accuracy estimation. Nature Communications. 12: 1340. PMID 33637700 DOI: 10.1038/s41467-021-21511-x  1
2021 Braun KM, Moreno GK, Halfmann PJ, Hodcroft EB, Baker DA, Boehm EC, Weiler AM, Haj AK, Hatta M, Chiba S, Maemura T, Kawaoka Y, Koelle K, O'Connor DH, Friedrich TC. Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck. Plos Pathogens. 17: e1009373. PMID 33635912 DOI: 10.1371/journal.ppat.1009373  1
2021 Vorobieva AA, White P, Liang B, Horne JE, Bera AK, Chow CM, Gerben S, Marx S, Kang A, Stiving AQ, Harvey SR, Marx DC, Khan GN, Fleming KG, Wysocki VH, ... Baker D, et al. De novo design of transmembrane β barrels. Science (New York, N.Y.). 371. PMID 33602829 DOI: 10.1126/science.abc8182  1
2021 Geeraert N, Archana A, Xu MN, Kao SJ, Baker DM, Thibodeau B. Investigating the link between Pearl River-induced eutrophication and hypoxia in Hong Kong shallow coastal waters. The Science of the Total Environment. 772: 145007. PMID 33581521 DOI: 10.1016/j.scitotenv.2021.145007  1
2021 Ma L, Pollard TP, Zhang Y, Schroeder MA, Ding MS, Cresce AV, Sun R, Baker DR, Helms BA, Maginn EJ, Wang C, Borodin O, Xu K. Functionalized Phosphonium Cations Enable Zn Metal Reversibility in Aqueous Electrolytes. Angewandte Chemie (International Ed. in English). PMID 33580625 DOI: 10.1002/anie.202017020  1
2021 Park H, Zhou G, Baek M, Baker D, DiMaio F. Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein-Ligand Docking. Journal of Chemical Theory and Computation. PMID 33577321 DOI: 10.1021/acs.jctc.0c01184  1
2021 Klima JC, Doyle LA, Lee JD, Rappleye M, Gagnon LA, Lee MY, Barros EP, Vorobieva AA, Dou J, Bremner S, Quon JS, Chow CM, Carter L, Mack DL, Amaro RE, ... Baker D, et al. Incorporation of sensing modalities into de novo designed fluorescence-activating proteins. Nature Communications. 12: 856. PMID 33558528 DOI: 10.1038/s41467-020-18911-w  1
2021 Baker DW, Celermajer DS. Acute aortic dissection as a late and fatal complication of transcatheter persistent ductus arteriosus occlusion: a case report. European Heart Journal. Case Reports. 5: ytaa484. PMID 33554021 DOI: 10.1093/ehjcr/ytaa484  1
2021 Quijano-Rubio A, Yeh HW, Park J, Lee H, Langan RA, Boyken SE, Lajoie MJ, Cao L, Chow CM, Miranda MC, Wi J, Hong HJ, Stewart L, Oh BH, Baker D. De novo design of modular and tunable protein biosensors. Nature. PMID 33503651 DOI: 10.1038/s41586-021-03258-z  1
2021 Nofal SD, Patel A, Blackman MJ, Flueck C, Baker DA. Guanylyl Cyclase-Alpha and the Activity of Its Appended P4-ATPase Domain Are Essential for cGMP Synthesis and Blood-Stage Egress. Mbio. 12. PMID 33500341 DOI: 10.1128/mBio.02694-20  1
2021 McKenzie ME, Deng B, Van Hoesen DC, Xia X, Baker DE, Rezikyan A, Youngman RE, Kelton KF. Nucleation pathways in barium silicate glasses. Scientific Reports. 11: 69. PMID 33420156 DOI: 10.1038/s41598-020-79749-2  1
2021 Ben-Sasson AJ, Watson JL, Sheffler W, Johnson MC, Bittleston A, Somasundaram L, Decarreau J, Jiao F, Chen J, Mela I, Drabek AA, Jarrett SM, Blacklow SC, Kaminski CF, Hura GL, ... ... Baker D, et al. Design of biologically active binary protein 2D materials. Nature. PMID 33408408 DOI: 10.1038/s41586-020-03120-8  1
2020 Cai L, Youngman RE, Baker DE, Rezikyan A, Zhang M, Wheaton B, Dutta I, Aitken BG, Allen AJ. Nucleation and early stage crystallization in barium disilicate glass. Journal of Non-Crystalline Solids. 548. PMID 34135535 DOI: 10.1016/j.jnoncrysol.2020.120330  1
2020 Mohring F, Hart MN, Patel A, Baker DA, Moon RW. CRISPR-Cas9 Genome Editing of . Bio-Protocol. 10: e3522. PMID 33654746 DOI: 10.21769/BioProtoc.3522  1
2020 Martin JT, Cottrell CA, Antanasijevic A, Carnathan DG, Cossette BJ, Enemuo CA, Gebru EH, Choe Y, Viviano F, Fischinger S, Tokatlian T, Cirelli KM, Ueda G, Copps J, Schiffner T, ... Baker D, et al. Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations. Npj Vaccines. 5: 72. PMID 33574310 DOI: 10.1038/s41541-020-00223-1  1
2020 Zhao YT, Fallas JA, Saini S, Ueda G, Somasundaram L, Zhou Z, Xavier I, Ehnes D, Xu C, Carter L, Wrenn S, Mathieu J, Sellers DL, Baker D, Ruohola-Baker H. F-domain valency determines outcome of signaling through the angiopoietin pathway. Biorxiv : the Preprint Server For Biology. PMID 33501432 DOI: 10.1101/2020.09.19.304188  1
2020 Baker DA, Matralis AN, Osborne SA, Large JM, Penzo M. Targeting the Malaria Parasite cGMP-Dependent Protein Kinase to Develop New Drugs. Frontiers in Microbiology. 11: 602803. PMID 33391223 DOI: 10.3389/fmicb.2020.602803  1
2020 Kimchi O, Goodrich CP, Courbet A, Curatolo AI, Woodall NB, Baker D, Brenner MP. Self-assembly-based posttranslational protein oscillators. Science Advances. 6. PMID 33328225 DOI: 10.1126/sciadv.abc1939  1
2020 Baker DW. Trust in Health Care in the Time of COVID-19. Jama. 324: 2373-2375. PMID 33320208 DOI: 10.1001/jama.2020.23343  0.01
2020 Ziatdinov M, Zhang S, Dollar O, Pfaendtner J, Mundy CJ, Li X, Pyles H, Baker D, De Yoreo JJ, Kalinin SV. Quantifying the Dynamics of Protein Self-Organization Using Deep Learning Analysis of Atomic Force Microscopy Data. Nano Letters. PMID 33306401 DOI: 10.1021/acs.nanolett.0c03447  1
2020 Divine R, Dang HV, Ueda G, Fallas JA, Vulovic I, Sheffler W, Saini S, Zhao YT, Raj IX, Morawski PA, Jennewein MF, Homad LJ, Wan YH, Tooley MR, Seeger F, ... ... Baker D, et al. Designed proteins assemble antibodies into modular nanocages. Biorxiv : the Preprint Server For Biology. PMID 33299994 DOI: 10.1101/2020.12.01.406611  1
2020 Guo T, Johnson LT, LaBarge GA, Penn CJ, Stumpf RP, Baker DB, Shao G. Less Agricultural Phosphorus Applied in 2019 Led to Less Dissolved Phosphorus Transported to Lake Erie. Environmental Science & Technology. PMID 33283499 DOI: 10.1021/acs.est.0c03495  1
2020 Baker DC. Preface. Advances in Carbohydrate Chemistry and Biochemistry. 78: ix-x. PMID 33276910 DOI: 10.1016/S0065-2318(20)30028-7  0.01
2020 Maguire JB, Haddox HK, Strickland D, Halabiya SF, Coventry B, Griffin JR, Pulavarti SVSRK, Cummins M, Thieker DF, Klavins E, Szyperski T, DiMaio F, Baker D, Kuhlman B. Perturbing the energy landscape for improved packing during computational protein design. Proteins. PMID 33249652 DOI: 10.1002/prot.26030  1
2020 Braun KM, Moreno GK, Halfmann PJ, Baker DA, Boehm EC, Weiler AM, Haj AK, Hatta M, Chiba S, Maemura T, Kawaoka Y, Koelle K, O'Connor DH, Friedrich TC. Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck. Biorxiv : the Preprint Server For Biology. PMID 33236011 DOI: 10.1101/2020.11.16.384917  1
2020 Baker DW, Dennis MR, Zannino D, Schilling C, Moreno PD, Bullock A, Disney P, Radford DJ, Hornung T, Grigg L, d'Udekem Y, Ayer J, Celermajer DS, Cordina R. Path ahead for 'low risk' adolescents living with a Fontan circulation. Heart (British Cardiac Society). PMID 33229361 DOI: 10.1136/heartjnl-2020-317619  1
2020 Roth E, Benoit S, Quentin B, Lam B, Will S, Ma M, Heeley N, Darwish T, Shrestha Y, Gribble F, Reimann F, Pshenichnaya I, Yeo G, Baker DJ, Trevaskis JL, et al. Behavioural and neurochemical mechanisms underpinning the feeding-suppressive effect of GLP-1/CCK combinatorial therapy. Molecular Metabolism. 101118. PMID 33221554 DOI: 10.1016/j.molmet.2020.101118  1
2020 Thomson A, Dobson R, Baker D, Giovannoni G. Digesting science: Developing educational activities about multiple sclerosis, prevention and treatment to increase the confidence of affected families. Multiple Sclerosis and Related Disorders. 47: 102624. PMID 33220567 DOI: 10.1016/j.msard.2020.102624  1
2020 Baker DW, Celermajer DS. Would increasing stress on the heart decrease stress on the doctor? Decision-making in asymptomatic pulmonary regurgitation. Heart (British Cardiac Society). PMID 33219110 DOI: 10.1136/heartjnl-2020-318349  1
2020 Caldwell SJ, Haydon IC, Piperidou N, Huang PS, Bick MJ, Sjöström HS, Hilvert D, Baker D, Zeymer C. Tight and specific lanthanide binding in a de novo TIM barrel with a large internal cavity designed by symmetric domain fusion. Proceedings of the National Academy of Sciences of the United States of America. PMID 33203677 DOI: 10.1073/pnas.2008535117  1
2020 Cunniffe N, Vuong KA, Ainslie D, Baker D, Beveridge J, Bickley S, Camilleri P, Craner M, Fitzgerald D, de la Fuente AG, Giovannoni G, Gray E, Hazlehurst L, Kapoor R, Kaur R, et al. Systematic approach to selecting licensed drugs for repurposing in the treatment of progressive multiple sclerosis. Journal of Neurology, Neurosurgery, and Psychiatry. PMID 33184094 DOI: 10.1136/jnnp-2020-324286  1
2020 A James S, Phillips S, Telatin A, Baker D, Ansorge R, Clarke P, J Hall L, R Carding S. Preterm Infants Harbour a Rapidly Changing Mycobiota That Includes Pathobionts. Journal of Fungi (Basel, Switzerland). 6. PMID 33182444 DOI: 10.3390/jof6040273  0.01
2020 Moreno GK, Braun KM, Riemersma KK, Martin MA, Halfmann PJ, Crooks CM, Prall T, Baker D, Baczenas JJ, Heffron AS, Ramuta M, Khubbar M, Weiler AM, Accola MA, Rehrauer WM, et al. Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread. Nature Communications. 11: 5558. PMID 33144575 DOI: 10.1038/s41467-020-19346-z  1
2020 Mulligan VK, Kang CS, Sawaya MR, Rettie S, Li X, Antselovich I, Craven TW, Watkins AM, Labonte JW, DiMaio F, Yeates TO, Baker D. Computational design of mixed chirality peptide macrocycles with internal symmetry. Protein Science : a Publication of the Protein Society. PMID 33058266 DOI: 10.1002/pro.3974  1
2020 Ding M, Baker D. Recent advances in high-throughput flow cytometry for drug discovery. Expert Opinion On Drug Discovery. 1-15. PMID 33054417 DOI: 10.1080/17460441.2021.1826433  0.01
2020 Heffron AS, McIlwain SJ, Baker DA, Amjadi MF, Khullar S, Sethi AK, Shelef MA, O'Connor DH, Ong IM. The landscape of antibody binding to SARS-CoV-2. Biorxiv : the Preprint Server For Biology. PMID 33052349 DOI: 10.1101/2020.10.10.334292  1
2020 Perrin AJ, Patel A, Flueck C, Blackman MJ, Baker DA. cAMP signalling and its role in host cell invasion by malaria parasites. Current Opinion in Microbiology. 58: 69-74. PMID 33032143 DOI: 10.1016/j.mib.2020.09.003  1
2020 Cybulski JD, Husa SM, Duprey NN, Mamo BL, Tsang TPN, Yasuhara M, Xie JY, Qiu JW, Yokoyama Y, Baker DM. Coral reef diversity losses in China's Greater Bay Area were driven by regional stressors. Science Advances. 6. PMID 33008908 DOI: 10.1126/sciadv.abb1046  1
2020 Jacobs BM, Taylor T, Awad A, Baker D, Giovanonni G, Noyce AJ, Dobson R. Summary-data-based Mendelian randomization prioritizes potential druggable targets for multiple sclerosis. Brain Communications. 2: fcaa119. PMID 33005893 DOI: 10.1093/braincomms/fcaa119  1
2020 Baker DC. Preface. Advances in Carbohydrate Chemistry and Biochemistry. 77: ix-x. PMID 33004113 DOI: 10.1016/S0065-2318(20)30010-X  0.01
2020 Wang LT, Pereira LS, Flores-Garcia Y, O'Connor J, Flynn BJ, Schön A, Hurlburt NK, Dillon M, Yang ASP, Fabra-García A, Idris AH, Mayer BT, Gerber MW, Gottardo R, Mason RD, ... Baker D, et al. A Potent Anti-Malarial Human Monoclonal Antibody Targets Circumsporozoite Protein Minor Repeats and Neutralizes Sporozoites in the Liver. Immunity. PMID 32946741 DOI: 10.1016/J.Immuni.2020.08.014  1
2020 Farrell DP, Anishchenko I, Shakeel S, Lauko A, Passmore LA, Baker D, DiMaio F. Deep learning enables the atomic structure determination of the Fanconi Anemia core complex from cryoEM. Iucrj. 7: 881-892. PMID 32939280 DOI: 10.1107/S2052252520009306  0.01
2020 Foster-Nyarko E, Alikhan NF, Ravi A, Thilliez G, Thomson NM, Baker D, Kay G, Cramer JD, O'Grady J, Antonio M, Pallen MJ. Genomic diversity of isolates from non-human primates in the Gambia. Microbial Genomics. 6. PMID 32924917 DOI: 10.1099/mgen.0.000428  0.01
2020 Cao L, Goreshnik I, Coventry B, Case JB, Miller L, Kozodoy L, Chen RE, Carter L, Walls AC, Park YJ, Strauch EM, Stewart L, Diamond MS, Veesler D, Baker D. De novo design of picomolar SARS-CoV-2 miniprotein inhibitors. Science (New York, N.Y.). PMID 32907861 DOI: 10.1126/Science.Abd9909  1
2020 Rasheed F, Saeed M, Alikhan NF, Baker D, Khurshid M, Ainsworth EV, Turner AK, Imran AA, Rasool MH, Saqalein M, Nisar MA, Fayyaz Ur Rehman M, Wain J, Yasir M, Langridge GC, et al. Emergence of Resistance to Fluoroquinolones and Third-Generation Cephalosporins in Typhi in Lahore, Pakistan. Microorganisms. 8. PMID 32883020 DOI: 10.3390/microorganisms8091336  1
2020 Xu C, Lu P, Gamal El-Din TM, Pei XY, Johnson MC, Uyeda A, Bick MJ, Xu Q, Jiang D, Bai H, Reggiano G, Hsia Y, Brunette TJ, Dou J, Ma D, ... Baker D, et al. Computational design of transmembrane pores. Nature. PMID 32848250 DOI: 10.1038/S41586-020-2646-5  1
2020 Basanta B, Bick MJ, Bera AK, Norn C, Chow CM, Carter LP, Goreshnik I, Dimaio F, Baker D. An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 32839327 DOI: 10.1073/Pnas.2005412117  1
2020 Wang B, Yang S, Wang Y, Kim Y, Htoon H, Doorn SK, Foran BJ, Bushmaker AW, Baker DR, Forcherio GT, Cronin SB. Formation of Brightly Luminescent MoS Nanoislands from Multilayer Flakes via Plasma Treatment and Laser Exposure. Acs Omega. 5: 20543-20547. PMID 32832807 DOI: 10.1021/acsomega.0c02753  1
2020 Lajoie MJ, Boyken SE, Salter AI, Bruffey J, Rajan A, Langan RA, Olshefsky A, Muhunthan V, Bick MJ, Gewe M, Quijano-Rubio A, Johnson J, Lenz G, Nguyen A, Pun S, ... ... Baker D, et al. Designed protein logic to target cells with precise combinations of surface antigens. Science (New York, N.Y.). PMID 32820060 DOI: 10.1126/Science.Aba6527  1
2020 Miao Y, Ha A, de Lau W, Yuki K, Santos AJM, You C, Geurts MH, Puschhof J, Pleguezuelos-Manzano C, Peng WC, Senlice R, Piani C, Buikema JW, Gbenedio OM, Vallon M, ... ... Baker D, et al. Next-Generation Surrogate Wnts Support Organoid Growth and Deconvolute Frizzled Pleiotropy In Vivo. Cell Stem Cell. PMID 32818433 DOI: 10.1016/J.Stem.2020.07.020  1
2020 Kirkpatrick RL, Lewis K, Langan RA, Lajoie MJ, Boyken SE, Eakman M, Baker D, Zalatan JG. Conditional Recruitment to a DNA-Bound CRISPR-Cas Complex Using a Colocalization-Dependent Protein Switch. Acs Synthetic Biology. PMID 32816470 DOI: 10.1021/Acssynbio.0C00012  1
2020 Martin JT, Cottrell CA, Antanasijevic A, Carnathan DG, Cossette BJ, Enemuo CA, Gebru EH, Choe Y, Viviano F, Fischinger S, Tokatlian T, Cirelli KM, Ueda G, Copps J, Schiffner T, ... ... Baker D, et al. Targeting HIV Env immunogens to B cell follicles in nonhuman primates through immune complex or protein nanoparticle formulations. Npj Vaccines. 5: 72. PMID 32802411 DOI: 10.1038/s41541-020-00223-1  1
2020 Cao L, Goreshnik I, Coventry B, Case JB, Miller L, Kozodoy L, Chen RE, Carter L, Walls L, Park YJ, Stewart L, Diamond M, Veesler D, Baker D. De novo design of picomolar SARS-CoV-2 miniprotein inhibitors. Biorxiv : the Preprint Server For Biology. PMID 32793905 DOI: 10.1101/2020.08.03.234914  1
2020 Li X, Yan M, Gu J, Lam VTT, Wai TC, Baker DM, Thompson PD, Yiu SKF, Lam PKS, Leung PTY. The effect of temperature on physiology, toxicity and toxin content of the benthic dinoflagellate Coolia malayensis from a seasonal tropical region. Water Research. 185: 116264. PMID 32791455 DOI: 10.1016/J.Watres.2020.116264  1
2020 Antanasijevic A, Ueda G, Brouwer PJM, Copps J, Huang D, Allen JD, Cottrell CA, Yasmeen A, Sewall LM, Bontjer I, Ketas TJ, Turner HL, Berndsen ZT, Montefiori DC, Klasse PJ, ... ... Baker D, et al. Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathogens. 16: e1008665. PMID 32780770 DOI: 10.1371/Journal.Ppat.1008665  1
2020 Ueda G, Antanasijevic A, Fallas JA, Sheffler W, Copps J, Ellis D, Hutchinson GB, Moyer A, Yasmeen A, Tsybovsky Y, Park YJ, Bick MJ, Sankaran B, Gillespie RA, Brouwer PJ, ... ... Baker D, et al. Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife. 9. PMID 32748788 DOI: 10.7554/Elife.57659  1
2020 Quijano-Rubio A, Yeh HW, Park J, Lee H, Langan RA, Boyken SE, Lajoie MJ, Cao L, Chow CM, Miranda MC, Wi J, Hong HJ, Stewart L, Oh BH, Baker D. design of modular and tunable allosteric biosensors. Biorxiv : the Preprint Server For Biology. PMID 32743576 DOI: 10.1101/2020.07.18.206946  1
2020 Baker DW, Tschurtz BA, Aliaga AE, Williams SC, Jauch EC, Schwamm LH. Determining the Need for Thrombectomy-Capable Stroke Centers Based on Travel Time to the Nearest Comprehensive Stroke Center. Joint Commission Journal On Quality and Patient Safety. PMID 32736996 DOI: 10.1016/j.jcjq.2020.06.005  1
2020 Muñoz IG, Baker DP, Peters E. Explaining the Education-Health Gradient in Preventing STIs in Andean Peru: Cognitive Executive Functioning, Awareness and Health Knowledge. International Perspectives On Sexual and Reproductive Health. 46: 113-124. PMID 32701061 DOI: 10.1363/46e9320  1
2020 Bay SK, McGeoch MA, Gillor O, Wieler N, Palmer DJ, Baker DJ, Chown SL, Greening C. Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution. Msystems. 5. PMID 32694128 DOI: 10.1128/mSystems.00540-20  1
2020 Moreno GK, Braun KM, Riemersma KK, Martin MA, Halfmann PJ, Crooks CM, Prall T, Baker D, Baczenas JJ, Heffron AS, Ramuta M, Khubbar M, Weiler AM, Accola MA, Rehrauer WM, et al. Distinct patterns of SARS-CoV-2 transmission in two nearby communities in Wisconsin, USA. Medrxiv : the Preprint Server For Health Sciences. PMID 32676620 DOI: 10.1101/2020.07.09.20149104  1
2020 van Wyk J, Orkin C, Rubio R, Bogner J, Baker D, Khuong-Josses MA, Parks D, Angelis K, Kahl LP, Matthews J, Wang R, Underwood M, Wynne B, Nascimento MC, Vandermeulen K, et al. Durable Suppression and Low Rate of Virologic Failure 3 Years After Switch to Dolutegravir + Rilpivirine 2-Drug Regimen: 148-Week Results From the SWORD-1 and -2 Randomized Clinical Trials. Journal of Acquired Immune Deficiency Syndromes (1999). PMID 32675772 DOI: 10.1097/Qai.0000000000002449  1
2020 Ressurreição M, Thomas JA, Nofal SD, Flueck C, Moon RW, Baker DA, van Ooij C. Use of a highly specific kinase inhibitor for rapid, simple and precise synchronization of Plasmodium falciparum and Plasmodium knowlesi asexual blood-stage parasites. Plos One. 15: e0235798. PMID 32673324 DOI: 10.1371/Journal.Pone.0235798  1
2020 Baker D, Roberts CA, Pryce G, Kang AS, Marta M, Reyes S, Schmierer K, Giovannoni G, Amor S. COVID-19 vaccine-readiness for anti-CD20-depleting therapy in autoimmune diseases. Clinical and Experimental Immunology. PMID 32671831 DOI: 10.1111/Cei.13495  1
2020 Baker D, Pryce G, James LK, Marta M, Schmierer K. The ocrelizumab phase II extension trial suggests the potential to improve the risk: Benefit balance in multiple sclerosis. Multiple Sclerosis and Related Disorders. 44: 102279. PMID 32645640 DOI: 10.1016/J.Msard.2020.102279  1
2020 Zhang S, Chen J, Liu J, Pyles H, Baker D, Chen CL, De Yoreo JJ. Engineering Biomolecular Self-Assembly at Solid-Liquid Interfaces. Advanced Materials (Deerfield Beach, Fla.). e1905784. PMID 32627885 DOI: 10.1002/Adma.201905784  1
2020 Petrova N, Nutma E, Carassiti D, Newman J, Amor S, Altmann DR, Baker D, Schmierer K. Synaptic loss in the multiple sclerosis spinal cord. Annals of Neurology. PMID 32608018 DOI: 10.1002/Ana.25835  1
2020 Hosseini-Hooshyar S, Martinello M, Yee J, Read P, Baker D, Post JJ, Finlayson R, Bloch M, Doyle JS, Shaw D, Hellard M, Petoumenos K, Carson J, Dore GJ, Matthews GV, et al. Low hepatitis C virus reinfection rate despite ongoing risk following universal access to direct-acting antiviral therapy among people living with HIV. Aids (London, England). 34: 1347-1358. PMID 32590433 DOI: 10.1097/Qad.0000000000002562  1
2020 Licht-Mayer S, Campbell GR, Canizares M, Mehta AR, Gane AB, McGill K, Ghosh A, Fullerton A, Menezes N, Dean J, Dunham J, Al-Azki S, Pryce G, Zandee S, Zhao C, ... ... Baker D, et al. Enhanced axonal response of mitochondria to demyelination offers neuroprotection: implications for multiple sclerosis. Acta Neuropathologica. PMID 32572598 DOI: 10.1007/S00401-020-02179-X  1
2020 Ford BE, Chachra SS, Alshawi A, Brennan A, Harnor S, Cano C, Baker DJ, Smith DM, Fairclough RJ, Agius L. Chronic Glucokinase Activator treatment activates liver Carbohydrate Response Element binding protein and improves hepatocyte ATP homeostasis during substrate challenge. Diabetes, Obesity & Metabolism. PMID 32519798 DOI: 10.1111/Dom.14111  0.01
2020 McIlroy SE, Wong JCY, Baker DM. Competitive traits of coral symbionts may alter the structure and function of the microbiome. The Isme Journal. PMID 32518247 DOI: 10.1038/S41396-020-0697-0  1
2020 Marr EJ, Milne RM, Anar B, Girling G, Schwach F, Mooney JP, Nahrendorf W, Spence PJ, Cunningham D, Baker DA, Langhorne J, Rayner JC, Billker O, Bushell ES, Thompson J. An enhanced toolkit for the generation of knockout and marker-free fluorescent . Wellcome Open Research. 5: 71. PMID 32500098 DOI: 10.12688/wellcomeopenres.15587.2  1
2020 Saxena G, Moore JM, Jones M, Pryce G, Ali L, Leisegang GR, Vijay V, Loveless S, Robertson NP, Schmierer K, Giovannoni G, Gnananpavan S, Baker D, Tallantyre EC, Kang AS. Detecting and predicting neutralization of alemtuzumab responses in MS. Neurology(R) Neuroimmunology & Neuroinflammation. 7. PMID 32499328 DOI: 10.1212/Nxi.0000000000000767  1
2020 Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, et al. Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods. PMID 32483333 DOI: 10.1038/S41592-020-0848-2  1
2020 Burpo FJ, Losch AR, Nagelli EA, Winter SJ, Bartolucci SF, McClure JP, Baker DR, Bui JK, Burns AR, O'Brien SF, Forcherio GT, Aikin BR, Healy KM, Remondelli MH, Mitropoulos AN, et al. A Salt-Templated Synthesis Method for Porous Platinum-based Macrobeams and Macrotubes. Journal of Visualized Experiments : Jove. PMID 32478752 DOI: 10.3791/61395  1
2020 Baker D, Amor S, Kang AS, Schmierer K, Giovannoni G. The underpinning biology relating to multiple sclerosis disease modifying treatments during the COVID-19 pandemic. Multiple Sclerosis and Related Disorders. 43: 102174. PMID 32464584 DOI: 10.1016/J.Msard.2020.102174  1
2020 Mateo-Casas M, Reyes S, O'Toole EA, De Trane S, Yildiz O, Allen-Philbey K, Mathews J, Baker D, Giovannoni G, Schmierer K. Severe skin reactions associated with cladribine in people with multiple sclerosis. Multiple Sclerosis and Related Disorders. 43: 102140. PMID 32454296 DOI: 10.1016/J.Msard.2020.102140  1
2020 Baker DW. Introducing CiteScore, Our Journal's Preferred Citation Index: Moving Beyond the Impact Factor. Joint Commission Journal On Quality and Patient Safety. PMID 32402761 DOI: 10.1016/j.jcjq.2020.03.005  0.01
2020 Etherington GJ, Heavens D, Baker D, Lister A, McNelly R, Garcia G, Clavijo B, Macaulay I, Haerty W, Di Palma F. Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal. Gigascience. 9. PMID 32396200 DOI: 10.1093/Gigascience/Giaa045  1
2020 Amor S, Baker D, Khoury SJ, Schmierer K, Giovanonni G. SARS-CoV-2 and Multiple Sclerosis: Not All Immune Depleting DMTs are Equal or Bad. Annals of Neurology. 87: 794-797. PMID 32383812 DOI: 10.1002/Ana.25770  1
2020 Gee S, Nelson N, Bornot A, Carter N, Cuomo ME, Dovedi SJ, Smith PD, Gianni D, Baker DJ. Developing an Arrayed CRISPR-Cas9 Co-Culture Screen for Immuno-Oncology Target ID. Slas Discovery : Advancing Life Sciences R & D. 2472555220916457. PMID 32375580 DOI: 10.1177/2472555220916457  0.01
2020 Kirk JW, Baker DA, Kirk JJ, MacAllister WS. A review of performance and symptom validity testing with pediatric populations. Applied Neuropsychology. Child. 1-15. PMID 32372667 DOI: 10.1080/21622965.2020.1750118  0.01
2020 Koehler Leman J, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, ... Baker D, et al. Better together: Elements of successful scientific software development in a distributed collaborative community. Plos Computational Biology. 16: e1007507. PMID 32365137 DOI: 10.1371/Journal.Pcbi.1007507  1
2020 Baker DW. Preparing for a Surge of Coronavirus Cases. Joint Commission Journal On Quality and Patient Safety. 46: e1-e2. PMID 32362356 DOI: 10.1016/j.jcjq.2020.03.001  0.01
2020 Conti-Jerpe IE, Thompson PD, Wong CWM, Oliveira NL, Duprey NN, Moynihan MA, Baker DM. Trophic strategy and bleaching resistance in reef-building corals. Science Advances. 6: eaaz5443. PMID 32300659 DOI: 10.1126/Sciadv.Aaz5443  1
2020 Sherratt S, Patel A, Baker DA, Riley EM, Goodier MR. Differential IL-18 Dependence of Canonical and Adaptive NK Cells for Antibody Dependent Responses to . Frontiers in Immunology. 11: 533. PMID 32296438 DOI: 10.3389/Fimmu.2020.00533  1
2020 Schmierer K, Baker D. B cells and multiple sclerosis spinal cord pathology. Brain Pathology (Zurich, Switzerland). PMID 32285483 DOI: 10.1111/Bpa.12840  1
2020 Brunette TJ, Bick MJ, Hansen JM, Chow CM, Kollman JM, Baker D. Modular repeat protein sculpting using rigid helical junctions. Proceedings of the National Academy of Sciences of the United States of America. PMID 32245816 DOI: 10.1073/Pnas.1908768117  1
2020 Chen Z, Kibler RD, Hunt A, Busch F, Pearl J, Jia M, VanAernum ZL, Wicky BIM, Dods G, Liao H, Wilken MS, Ciarlo C, Green S, El-Samad H, Stamatoyannopoulos J, ... ... Baker D, et al. De novo design of protein logic gates. Science (New York, N.Y.). 368: 78-84. PMID 32241946 DOI: 10.1126/Science.Aay2790  1
2020 Bertrand JA, Schicht M, Stamer WD, Baker D, Sherwood JM, Lütjen-Drecoll E, Selwood DL, Overby DR. The β4-Subunit of the Large-Conductance Potassium Ion Channel KCa1.1 Regulates Outflow Facility in Mice. Investigative Ophthalmology & Visual Science. 61: 41. PMID 32203982 DOI: 10.1167/Iovs.61.3.41  1
2020 Freeman CJ, Easson CG, Matterson KO, Thacker RW, Baker DM, Paul VJ. Microbial symbionts and ecological divergence of Caribbean sponges: A new perspective on an ancient association. The Isme Journal. PMID 32203120 DOI: 10.1038/S41396-020-0625-3  1
2020 Baker DW, Chassin MR. Inaccuracies Regarding the Joint Commission Newborn Identification Standard. Jama Pediatrics. PMID 32202602 DOI: 10.1001/jamapediatrics.2020.0062  1
2020 Wu HQ, Baker D, Ovaa H. Small molecules that target the ubiquitin system. Biochemical Society Transactions. PMID 32196552 DOI: 10.1042/Bst20190535  0.01
2020 Vuvan DT, Simon E, Baker DJ, Monzingo E, Elliott EM. Musical training mediates the relation between working memory capacity and preference for musical complexity. Memory & Cognition. PMID 32193819 DOI: 10.3758/S13421-020-01031-7  0.01
2020 Ten Dijke P, Baker D. Controlling Smad4 signaling with a Wip. Embo Reports. e50246. PMID 32189449 DOI: 10.15252/Embr.202050246  1
2020 Wei KY, Moschidi D, Bick MJ, Nerli S, McShan AC, Carter LP, Huang PS, Fletcher DA, Sgourakis NG, Boyken SE, Baker D. Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proceedings of the National Academy of Sciences of the United States of America. PMID 32188784 DOI: 10.1073/Pnas.1914808117  1
2020 Richards JL, Sheng V, Yi CW, Ying CL, Ting NS, Sadovy Y, Baker D. Prevalence of critically endangered European eel () in Hong Kong supermarkets. Science Advances. 6: eaay0317. PMID 32181342 DOI: 10.1126/Sciadv.Aay0317  1
2020 Koussis K, Withers-Martinez C, Baker DA, Blackman MJ. Simultaneous multiple allelic replacement in the malaria parasite enables dissection of PKG function. Life Science Alliance. 3. PMID 32179592 DOI: 10.26508/lsa.201900626  1
2020 Isaacs-Ten A, Echeandia M, Moreno-Gonzalez M, Brion A, Goldson A, Philo M, Patterson AM, Parker A, Galduroz M, Baker D, Rushbrook SM, Hildebrand F, Beraza N. Intestinal microbiome-macrophage crosstalk contributes to cholestatic liver disease by promoting intestinal permeability. Hepatology (Baltimore, Md.). PMID 32168395 DOI: 10.1002/Hep.31228  1
2020 Baker DW, Deng YY, Nojoumian AH. Stress cardiomyopathy in dextrocardia with situs inversus and anomalous coronary arteries. Cardiology in the Young. 1-3. PMID 32131905 DOI: 10.1017/S1047951120000268  0.01
2020 Yau YY, Baker DM, Thibodeau B. Quantifying the impact of anthropogenic atmospheric nitrogen deposition on the generation of hypoxia under future emission scenarios in Chinese coastal waters. Environmental Science & Technology. PMID 32126755 DOI: 10.1021/Acs.Est.0C00706  1
2020 Baker D, Ali L, Saxena G, Pryce G, Jones M, Schmierer K, Giovannoni G, Gnanapavan S, Munger KC, Samkoff L, Goodman A, Kang AS. The Irony of Humanization: Alemtuzumab, the First, But One of the Most Immunogenic, Humanized Monoclonal Antibodies. Frontiers in Immunology. 11: 124. PMID 32117274 DOI: 10.3389/Fimmu.2020.00124  1
2020 Shortreed CG, Wiseman RW, Karl JA, Bussan HE, Baker DA, Prall TM, Haj AK, Moreno GK, Penedo MCT, O'Connor DH. Characterization of 100 extended major histocompatibility complex haplotypes in Indonesian cynomolgus macaques. Immunogenetics. PMID 32112172 DOI: 10.1007/S00251-020-01159-5  1
2020 Henrici RC, Edwards RL, Zoltner M, van Schalkwyk DA, Hart MN, Mohring F, Moon RW, Nofal SD, Patel A, Flueck C, Baker DA, Odom John AR, Field MC, Sutherland CJ. The Artemisinin Susceptibility-Associated AP-2 Adaptin μ Subunit is Clathrin Independent and Essential for Schizont Maturation. Mbio. 11. PMID 32098816 DOI: 10.1128/Mbio.02918-19  1
2020 Ali L, Saxena G, Jones M, Leisegang GR, Gammon L, Gnanapavan S, Giovannoni G, Schmierer K, Baker D, Kang AS. A cell-based assay for the detection of neutralizing antibodies against alemtuzumab. Biotechniques. PMID 32096651 DOI: 10.2144/Btn-2019-0122  1
2020 Ng AH, Nguyen TH, Gómez-Schiavon M, Dods G, Langan RA, Boyken SE, Samson JA, Waldburger LM, Dueber JE, Baker D, El-Samad H. Publisher Correction: Modular and tunable biological feedback control using a de novo protein switch. Nature. PMID 32094663 DOI: 10.1038/S41586-020-2046-X  1
2020 Wang A, Conti-Jerpe IE, Richards JL, Baker DM. sp. nov. (Nudibranchia, Trinchesiidae), a corallivorous pest species in the aquarium trade. Zookeys. 909: 1-24. PMID 32089632 DOI: 10.3897/Zookeys.909.35278  1
2020 Uesugi A, Baker DJ, de Silva N, Nurkowski K, Hodgins KA. A lack of genetically compatible mates constrains the spread of an invasive weed. The New Phytologist. PMID 32083724 DOI: 10.1111/nph.16496  0.01
2020 Haj AK, Breitbach ME, Baker DA, Mohns MS, Moreno GK, Wilson NA, Lyamichev V, Patel J, Weisgrau KL, Dudley DM, O'Connor DH. High-Throughput Identification of MHC Class I Binding Peptides Using an Ultradense Peptide Array. Journal of Immunology (Baltimore, Md. : 1950). PMID 32060132 DOI: 10.4049/Jimmunol.1900889  1
2020 Yasir M, Turner AK, Bastkowski S, Baker D, Page AJ, Telatin A, Phan MD, Monahan L, Savva GM, Darling A, Webber MA, Charles IG. TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance. Genome Research. PMID 32051187 DOI: 10.1101/Gr.254391.119  1
2020 Saxena GK, Theocharopoulos I, Aziz NT, Jones M, Gnanapavan S, Giovannoni G, Schmierer K, Garnett JA, Baker D, Kang AS. GloBody Technology: Detecting Anti-Drug Antibody against VH/VL domains. Scientific Reports. 10: 1860. PMID 32024871 DOI: 10.1038/S41598-020-58041-3  1
2020 VanAernum ZL, Busch F, Jones BJ, Jia M, Chen Z, Boyken SE, Sahasrabuddhe A, Baker D, Wysocki VH. Rapid online buffer exchange for screening of proteins, protein complexes and cell lysates by native mass spectrometry. Nature Protocols. PMID 32005983 DOI: 10.1038/S41596-019-0281-0  1
2020 Hellner B, Alamdari S, Pyles H, Zhang S, Prakash A, Sprenger KG, De Yoreo JJ, Baker D, Pfaendtner J, Baneyx F. Sequence-structure-binding relationships reveal adhesion behavior of the Car9 solid-binding peptide: an integrated experimental and simulation study. Journal of the American Chemical Society. PMID 31934768 DOI: 10.1021/Jacs.9B11617  1
2020 Yang J, Anishchenko I, Park H, Peng Z, Ovchinnikov S, Baker D. Improved protein structure prediction using predicted interresidue orientations. Proceedings of the National Academy of Sciences of the United States of America. PMID 31896580 DOI: 10.1073/Pnas.1914677117  1
2020 Ueda G, Antanasijevic A, Fallas JA, Sheffler W, Copps J, Ellis D, Hutchinson GB, Moyer A, Yasmeen A, Tsybovsky Y, Park Y, Bick MJ, Sankaran B, Gillespie RA, Brouwer PJ, ... Baker D, et al. Author response: Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens Elife. DOI: 10.7554/Elife.57659.Sa2  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Members of the RosettaCommons Consortium. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S009  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Details of Remaining Collective Challenges. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S008  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Commercial spin-off companies from the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S007  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Values Statement: Equality and Inclusion in the RosettaCommons. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S005  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Descriptions of the Rosetta board positions. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S004  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Typical development workflow in the Rosetta community. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S003  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Specific tests for Rosetta running on our automated testing framework. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S002  1
2020 Leman JK, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J, Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, et al. Growth in Rosetta PIs and conference attendees. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1007507.S001  1
2020 Marx SK, Vorobieva A, Chow C, Craig JM, Kim HC, Abell SJ, Huang J, Gerben S, Baker D, Gundlach JH. de novo Design of Ion Conducting Transmembrane Protein Nanopores Biophysical Journal. 118: 483a-484a. DOI: 10.1016/J.Bpj.2019.11.2678  0.01
2020 Davis J, Heiselman C, Peresleni T, Baker D, Garry D. 202: Matrix Metalloproteinases (MMPs) are Potential Markers for Preterm Birth (PTB) American Journal of Obstetrics and Gynecology. 222. DOI: 10.1016/J.Ajog.2019.11.218  1
2019 Bushinsky SM, Landschützer P, Rödenbeck C, Gray AR, Baker D, Mazloff MR, Resplandy L, Johnson KS, Sarmiento JL. Reassessing Southern Ocean Air-Sea CO Flux Estimates With the Addition of Biogeochemical Float Observations. Global Biogeochemical Cycles. 33: 1370-1388. PMID 32025087 DOI: 10.1029/2019Gb006176  1
2019 Carr M, Richardson R, Tong W, Bloch M, Baker D, Hoy JF. Switch from tenofovir DF to raltegravir is not associated with weight gain over 96 weeks. Aids (London, England). PMID 31895147 DOI: 10.1097/Qad.0000000000002473  1
2019 Li J, Chu D, Dong H, Baker DR, Jiang R. Boosted Oxygen Evolution Reactivity by Igniting Double Exchange Interaction in Spinel Oxides. Journal of the American Chemical Society. PMID 31867964 DOI: 10.1021/jacs.9b10882  1
2019 Park J, Selvaraj B, McShan AC, Boyken SE, Wei KY, Oberdorfer G, DeGrado W, Sgourakis NG, Cuneo MJ, Myles DA, Baker D. De novo design of a homo-trimeric amantadine-binding protein. Elife. 8. PMID 31854299 DOI: 10.7554/Elife.47839  1
2019 Cannon KA, Park RU, Boyken SE, Nattermann U, Yi S, Baker D, King NP, Yeates TO. Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineeringfig. Protein Science : a Publication of the Protein Society. PMID 31840320 DOI: 10.1002/Pro.3802  1
2019 Yin Y, Ochi N, Craven TW, Baker D, Takigawa N, Suga H. De novo carborane-containing macrocyclic peptides targeting human EGFR. Journal of the American Chemical Society. PMID 31752491 DOI: 10.1021/Jacs.9B09106  1
2019 Duprey NN, Wang XT, Kim T, Cybulski JD, Vonhof HB, Crutzen PJ, Haug GH, Sigman DM, Martínez-García A, Baker DM. Megacity development and the demise of coastal coral communities: evidence from coral skeleton δ N records in the Pearl River estuary. Global Change Biology. PMID 31732999 DOI: 10.1111/Gcb.14923  1
2019 Khatib F, Desfosses A, Koepnick B, Flatten J, Popović Z, Baker D, Cooper S, Gutsche I, Horowitz S. Building de novo cryo-electron microscopy structures collaboratively with citizen scientists. Plos Biology. 17: e3000472. PMID 31714936 DOI: 10.1371/Journal.Pbio.3000472  1
2019 Weitzner BD, Kipnis Y, Daniel AG, Hilvert D, Baker D. A computational method for design of connected catalytic networks in proteins. Protein Science : a Publication of the Protein Society. PMID 31642127 DOI: 10.1002/Pro.3757  1
2019 Baker D, Pryce G, James LK, Schmierer K, Giovannoni G. Failed B cell survival factor trials support the importance of memory B cells in multiple sclerosis. European Journal of Neurology. PMID 31617269 DOI: 10.1111/Ene.14105  1
2019 Baker DW. Dismantling the opioid crisis. The Journal of Family Practice. 68: 467. PMID 31609363  0.01
2019 Bonebrake TC, Guo F, Dingle C, Baker DM, Kitching RL, Ashton LA. Conservation Success through IPBES-Guided Transformative Change. Trends in Ecology & Evolution. PMID 31601447 DOI: 10.1016/J.Tree.2019.08.010  1
2019 Martinello M, Yee J, Bartlett SR, Read P, Baker D, Post JJ, Finlayson R, Bloch M, Doyle J, Shaw D, Hellard M, Petoumenos K, Lin L, Marks P, Applegate T, et al. Moving towards hepatitis C micro-elimination among people living with HIV in Australia: the CEASE study. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31585005 DOI: 10.1093/Cid/Ciz985  1
2019 Matralis AN, Malik A, Penzo M, Moreno I, Almela MJ, Camino I, Crespo B, Saadeddin A, Ghidelli-Disse S, Rueda L, Calderon F, Osborne S, Drewes G, Boesche M, Fernandez Alvaro E, ... Baker DA, et al. Development of Chemical Entities Endowed with Potent Fast- Killing Properties against Plasmodium falciparum Malaria Parasites. Journal of Medicinal Chemistry. PMID 31566384 DOI: 10.1021/Acs.Jmedchem.9B01099  1
2019 Brouwer PJM, Antanasijevic A, Berndsen Z, Yasmeen A, Fiala B, Bijl TPL, Bontjer I, Bale JB, Sheffler W, Allen JD, Schorcht A, Burger JA, Camacho M, Ellis D, Cottrell CA, ... ... Baker D, et al. Enhancing and shaping the immunogenicity of native-like HIV-1 envelope trimers with a two-component protein nanoparticle. Nature Communications. 10: 4272. PMID 31537780 DOI: 10.1038/S41467-019-12080-1  1
2019 Foight GW, Wang Z, Wei CT, Jr Greisen P, Warner KM, Cunningham-Bryant D, Park K, Brunette TJ, Sheffler W, Baker D, Maly DJ. Multi-input chemical control of protein dimerization for programming graded cellular responses. Nature Biotechnology. PMID 31501561 DOI: 10.1038/S41587-019-0242-8  1
2019 Forcherio GT, Baker DR, Leff AC, Boltersdorf J, McClure JP, Grew KN, Lundgren CA. Photodeposition of Pd onto Colloidal Au Nanorods by Surface Plasmon Excitation. Journal of Visualized Experiments : Jove. PMID 31475988 DOI: 10.3791/60041  1
2019 Large JM, Birchall K, Bouloc NS, Merritt AT, Smiljanic-Hurley E, Tsagris DJ, Wheldon MC, Ansell KH, Coombs PJ, Kettleborough CA, Whalley D, Stewart LB, Bowyer PW, Baker DA, Osborne SA. Potent bicyclic inhibitors of malarial cGMP-dependent protein kinase: approaches to combining improvements in cell potency, selectivity and structural novelty. Bioorganic & Medicinal Chemistry Letters. 126610. PMID 31471167 DOI: 10.1016/J.Bmcl.2019.08.014  1
2019 Cariveau D, Fay AE, Baker D, Fagan EB, Wilson CG. Evaluation of a pharmacist-led naloxone coprescribing program in primary care. Journal of the American Pharmacists Association : Japha. PMID 31466899 DOI: 10.1016/j.japh.2019.07.012  0.01
2019 Norton CB, Alico Lauria H, Baker D, Hauser P, Smith-Miller CA. Nurses' Short Peripheral Catheter Flushing Practices: Implications for Patient Care, Nursing Education, and Policy. Journal of Infusion Nursing : the Official Publication of the Infusion Nurses Society. 42: 228-236. PMID 31464830 DOI: 10.1097/Nan.0000000000000337  0.01
2019 Porter KA, Padhorny D, Desta I, Ignatov M, Beglov D, Kotelnikov S, Sun Z, Alekseenko A, Anishchenko I, Cong Q, Ovchinnikov S, Baker D, Vajda S, Kozakov D. Template-Based Modeling by ClusPro in CASP13 and the Potential for Using Co-evolutionary Information in Docking. Proteins. PMID 31444975 DOI: 10.1002/Prot.25808  1
2019 Pecora de Barros E, Schiffer JM, Vorobieva A, Dou J, Baker D, Amaro RE. Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics. Journal of Chemical Theory and Computation. PMID 31442033 DOI: 10.1021/Acs.Jctc.9B00483  1
2019 Naidu SS, Daniels MJ, Elmariah S, Garcia S, Klein AJ, Feldman DN, Ing FF, Kavinsky CJ, Devireddy C, Mahmud E, Grines CL, Henry TD, Duffy PL, Amin ZC, Aronow HD, ... ... Baker D, et al. Hot topics in interventional cardiology: Proceedings from the Society for Cardiovascular Angiography and Interventions (SCAI) 2019 Think Tank. Catheterization and Cardiovascular Interventions : Official Journal of the Society For Cardiac Angiography & Interventions. PMID 31441590 DOI: 10.1002/ccd.28449  0.01
2019 Lachs L, Johari NAM, Le DQ, Safuan CDM, Duprey NN, Tanaka K, Hong TC, Ory NC, Bachok Z, Baker DM, Kochzius M, Shirai K. Effects of tourism-derived sewage on coral reefs: Isotopic assessments identify effective bioindicators. Marine Pollution Bulletin. 148: 85-96. PMID 31422307 DOI: 10.1016/J.Marpolbul.2019.07.059  1
2019 Palmer PI, Feng L, Baker D, Chevallier F, Bösch H, Somkuti P. Net carbon emissions from African biosphere dominate pan-tropical atmospheric CO signal. Nature Communications. 10: 3344. PMID 31409792 DOI: 10.1038/S41467-019-11097-W  1
2019 Baker D, Nutma E, O'Shea H, Cooke A, Orian JM, Amor S. Autoimmune encephalomyelitis in NOD mice is not initially a progressive multiple sclerosis model. Annals of Clinical and Translational Neurology. 6: 1362-1372. PMID 31402611 DOI: 10.1002/Acn3.792  1
2019 Baker DW, Campbell R. Standardized Orders for Titrating Vasopressors: Do Efforts to Improve Safety Slow Delivery of Care? Joint Commission Journal On Quality and Patient Safety. PMID 31366441 DOI: 10.1016/j.jcjq.2019.07.002  0.01
2019 Langan RA, Boyken SE, Ng AH, Samson JA, Dods G, Westbrook AM, Nguyen TH, Lajoie MJ, Chen Z, Berger S, Mulligan VK, Dueber JE, Novak WRP, El-Samad H, Baker D. De novo design of bioactive protein switches. Nature. PMID 31341284 DOI: 10.1038/S41586-019-1432-8  1
2019 Ng AH, Nguyen TH, Gómez-Schiavon M, Dods G, Langan RA, Boyken SE, Samson JA, Waldburger LM, Dueber JE, Baker D, El-Samad H. Modular and tunable biological feedback control using a de novo protein switch. Nature. PMID 31341280 DOI: 10.1038/S41586-019-1425-7  1
2019 Park H, Lee GR, Kim DE, Anishchanka I, Cong Q, Baker D. High-accuracy refinement using Rosetta in CASP13. Proteins. PMID 31325340 DOI: 10.1002/Prot.25784  1
2019 Camarda G, Jirawatcharadech P, Priestley RS, Saif A, March S, Wong MHL, Leung S, Miller AB, Baker DA, Alano P, Paine MJI, Bhatia SN, O'Neill PM, Ward SA, Biagini GA. Antimalarial activity of primaquine operates via a two-step biochemical relay. Nature Communications. 10: 3226. PMID 31324806 DOI: 10.1038/S41467-019-11239-0  0.01
2019 Batcheller L, Baker D. Cost of disease modifying therapies for multiple sclerosis: Is front-loading the answer? Journal of the Neurological Sciences. 404: 19-28. PMID 31323518 DOI: 10.1016/J.Jns.2019.07.009  0.01
2019 Caskey JR, Wiseman RW, Karl JA, Baker DA, Lee T, Maddox RJ, Raveendran M, Harris RA, Hu J, Muzny DM, Rogers J, O'Connor DH. MHC genotyping from rhesus macaque exome sequences. Immunogenetics. PMID 31321455 DOI: 10.1007/S00251-019-01125-W  1
2019 McIlroy SE, Thompson PD, Yuan FL, Bonebrake TC, Baker DM. Subtropical thermal variation supports persistence of corals but limits productivity of coral reefs. Proceedings. Biological Sciences. 286: 20190882. PMID 31311470 DOI: 10.1098/Rspb.2019.0882  1
2019 Aboud M, Orkin C, Podzamczer D, Bogner JR, Baker D, Khuong-Josses MA, Parks D, Angelis K, Kahl LP, Blair EA, Adkison K, Underwood M, Matthews JE, Wynne B, Vandermeulen K, et al. Efficacy and safety of dolutegravir-rilpivirine for maintenance of virological suppression in adults with HIV-1: 100-week data from the randomised, open-label, phase 3 SWORD-1 and SWORD-2 studies. The Lancet. Hiv. PMID 31307948 DOI: 10.1016/S2352-3018(19)30149-3  1
2019 Chen J, McIlroy SE, Archana A, Baker DM, Panagiotou G. A pollution gradient contributes to the taxonomic, functional, and resistome diversity of microbial communities in marine sediments. Microbiome. 7: 104. PMID 31307536 DOI: 10.1186/S40168-019-0714-6  1
2019 Cong Q, Anishchenko I, Ovchinnikov S, Baker D. Protein interaction networks revealed by proteome coevolution. Science (New York, N.Y.). 365: 185-189. PMID 31296772 DOI: 10.1126/Science.Aaw6718  1
2019 Pyles H, Zhang S, De Yoreo JJ, Baker D. Controlling protein assembly on inorganic crystals through designed protein interfaces. Nature. 571: 251-256. PMID 31292559 DOI: 10.1038/S41586-019-1361-6  1
2019 Baker D, Jacobs BM, Gnanapavan S, Schmierer K, Giovannoni G. Plasma cell and B cell-targeted treatments for use in advanced multiple sclerosis. Multiple Sclerosis and Related Disorders. 35: 19-25. PMID 31279232 DOI: 10.1016/J.Msard.2019.06.030  1
2019 Tabatabaee S, Baker D, Selwood DL, Whalley BJ, Stephens GJ. The Cannabinoid-Like Compound, VSN16R, Acts on Large Conductance, Ca-Activated K Channels to Modulate Hippocampal CA1 Pyramidal Neuron Firing. Pharmaceuticals (Basel, Switzerland). 12. PMID 31277369 DOI: 10.3390/Ph12030104  1
2019 Schuh AE, Jacobson AR, Basu S, Weir B, Baker D, Bowman K, Chevallier F, Crowell S, Davis KJ, Deng F, Denning S, Feng L, Jones D, Liu J, Palmer PI. Quantifying the Impact of Atmospheric Transport Uncertainty on CO Surface Flux Estimates. Global Biogeochemical Cycles. 33: 484-500. PMID 31244506 DOI: 10.1029/2018Gb006086  1
2019 Goodall EF, Leach V, Wang C, Cooper-Knock J, Heath PR, Baker D, Drew DR, Saffrey MJ, Simpson JE, Romero IA, Wharton SB. Age-Associated mRNA and miRNA Expression Changes in the Blood-Brain Barrier. International Journal of Molecular Sciences. 20. PMID 31242592 DOI: 10.3390/Ijms20123097  1
2019 El Bakkouri M, Kouidmi I, Wernimont AK, Amani M, Hutchinson A, Loppnau P, Kim JJ, Flueck C, Walker JR, Seitova A, Senisterra G, Kakihara Y, Kim C, Blackman MJ, Calmettes C, Baker DA, et al. Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31239348 DOI: 10.1073/Pnas.1905558116  1
2019 Klassen KM, Millard T, Stout J, McDonald K, Dodson S, Osborne RH, Battersby MW, Fairley CK, Kidd MR, McMahon J, Baker D, Elliott JH. Recruiting people with HIV to an online self-management support randomised controlled trial: barriers and facilitators. Sexual Health. PMID 31234962 DOI: 10.1071/SH18130  0.01
2019 Snyder AG, Hubbard NW, Messmer MN, Kofman SB, Hagan CE, Orozco SL, Chiang K, Daniels BP, Baker D, Oberst A. Intratumoral activation of the necroptotic pathway components RIPK1 and RIPK3 potentiates antitumor immunity. Science Immunology. 4. PMID 31227597 DOI: 10.1126/Sciimmunol.Aaw2004  0.01
2019 Wołoszyn P, Baumberg I, Baker D. The Reliability of Noninvasive Blood Pressure Measurement through Layers of Autumn/Winter Clothing: a Prospective Study. Wilderness & Environmental Medicine. PMID 31221602 DOI: 10.1016/j.wem.2019.03.006  1
2019 Mohring F, Hart MN, Rawlinson TA, Henrici R, Charleston JA, Diez Benavente E, Patel A, Hall J, Almond N, Campino S, Clark TG, Sutherland CJ, Baker DA, Draper SJ, Moon RW. Rapid and iterative genome editing in the malaria parasite provides new tools for research. Elife. 8. PMID 31205002 DOI: 10.7554/Elife.45829  1
2019 Hao Y, Baker D, Ten Dijke P. TGF-β-Mediated Epithelial-Mesenchymal Transition and Cancer Metastasis. International Journal of Molecular Sciences. 20. PMID 31195692 DOI: 10.3390/Ijms20112767  1
2019 Iegre J, Brear P, Baker DJ, Tan YS, Atkinson EL, Sore HF, O' Donovan DH, Verma CS, Hyvönen M, Spring DR. Efficient development of stable and highly functionalised peptides targeting the CK2α/CK2β protein-protein interaction. Chemical Science. 10: 5056-5063. PMID 31183056 DOI: 10.1039/c9sc00798a  0.01
2019 Wu Q, Peng Z, Anishchenko I, Cong Q, Baker D, Yang J. Protein contact prediction using metagenome sequence data and residual neural networks. Bioinformatics (Oxford, England). PMID 31173061 DOI: 10.1093/Bioinformatics/Btz477  1
2019 Koepnick B, Flatten J, Husain T, Ford A, Silva DA, Bick MJ, Bauer A, Liu G, Ishida Y, Boykov A, Estep RD, Kleinfelter S, Nørgård-Solano T, Wei L, Players F, ... Baker D, et al. De novo protein design by citizen scientists. Nature. PMID 31168091 DOI: 10.1038/S41586-019-1274-4  1
2019 Ravenhall M, Benavente ED, Sutherland CJ, Baker DA, Campino S, Clark TG. An analysis of large structural variation in global Plasmodium falciparum isolates identifies a novel duplication of the chloroquine resistance associated gene. Scientific Reports. 9: 8287. PMID 31164664 DOI: 10.1038/S41598-019-44599-0  1
2019 Suriyamurthy S, Baker D, Ten Dijke P, Iyengar PV. Epigenetic Reprogramming of TGF-β Signaling in Breast Cancer. Cancers. 11. PMID 31137748 DOI: 10.3390/Cancers11050726  1
2019 Bonebrake TC, Guo F, Dingle C, Baker DM, Kitching RL, Ashton LA. Integrating Proximal and Horizon Threats to Biodiversity for Conservation. Trends in Ecology & Evolution. PMID 31130317 DOI: 10.1016/J.Tree.2019.04.001  1
2019 Valliere MA, Korman TP, Woodall NB, Khitrov GA, Taylor RE, Baker D, Bowie JU. Author Correction: A cell-free platform for the prenylation of natural products and application to cannabinoid production. Nature Communications. 10: 2363. PMID 31127097 DOI: 10.1038/S41467-019-10436-1  1
2019 Mohan K, Ueda G, Kim AR, Jude KM, Fallas JA, Guo Y, Hafer M, Miao Y, Saxton RA, Piehler J, Sankaran VG, Baker D, Garcia KC. Topological control of cytokine receptor signaling induces differential effects in hematopoiesis. Science (New York, N.Y.). 364. PMID 31123111 DOI: 10.1126/Science.Aav7532  1
2019 Baker DW, Hyun D, Neuhauser MM, Bhatt J, Srinivasan A. Leading Practices in Antimicrobial Stewardship: Conference Summary. Joint Commission Journal On Quality and Patient Safety. PMID 31122789 DOI: 10.1016/j.jcjq.2019.04.006  0.01
2019 Cao L, Yu B, Kong D, Cong Q, Yu T, Chen Z, Hu Z, Chang H, Zhong J, Baker D, He Y. Functional expression and characterization of the envelope glycoprotein E1E2 heterodimer of hepatitis C virus. Plos Pathogens. 15: e1007759. PMID 31116791 DOI: 10.1371/Journal.Ppat.1007759  1
2019 Boyken SE, Benhaim MA, Busch F, Jia M, Bick MJ, Choi H, Klima JC, Chen Z, Walkey C, Mileant A, Sahasrabuddhe A, Wei KY, Hodge EA, Byron S, Quijano-Rubio A, ... Baker D, et al. De novo design of tunable, pH-driven conformational changes. Science (New York, N.Y.). 364: 658-664. PMID 31097662 DOI: 10.1126/Science.Aav7897  1
2019 Dang LT, Miao Y, Ha A, Yuki K, Park K, Janda CY, Jude KM, Mohan K, Ha N, Vallon M, Yuan J, Vilches-Moure JG, Kuo CJ, Garcia KC, Baker D. Receptor subtype discrimination using extensive shape complementary designed interfaces. Nature Structural & Molecular Biology. PMID 31086346 DOI: 10.1038/s41594-019-0224-z  1
2019 Patel A, Perrin AJ, Flynn HR, Bisson C, Withers-Martinez C, Treeck M, Flueck C, Nicastro G, Martin SR, Ramos A, Gilberger TW, Snijders AP, Blackman MJ, Baker DA. Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery. Plos Biology. 17: e3000264. PMID 31075098 DOI: 10.1371/Journal.Pbio.3000264  1
2019 Bulutoglu B, Macazo FC, Bale J, King N, Baker D, Minteer SD, Banta S. Multimerization of an Alcohol Dehydrogenase by Fusion to a Designed Self-Assembling Protein Results in Enhanced Bioelectrocatalytic Operational Stability. Acs Applied Materials & Interfaces. PMID 31066271 DOI: 10.1021/Acsami.9B04256  1
2019 Penzo M, de Las Heras-Dueña L, Mata-Cantero L, Diaz-Hernandez B, Vazquez-Muñiz MJ, Ghidelli-Disse S, Drewes G, Fernandez-Alvaro E, Baker DA. High-throughput screening of the Plasmodium falciparum cGMP-dependent protein kinase identified a thiazole scaffold which kills erythrocytic and sexual stage parasites. Scientific Reports. 9: 7005. PMID 31065005 DOI: 10.1038/S41598-019-42801-X  1
2019 Baker D, Norris D, Cherneva V. Disenfranchised Grief and Families' Experiences of Death After Police Contact in the United States. Omega. 30222819846420. PMID 31060419 DOI: 10.1177/0030222819846420  0.01
2019 Chen Z, Johnson MC, Chen J, Bick MJ, Boyken SE, Lin B, De Yoreo JJ, Kollman JM, Baker D, DiMaio F. Self-assembling 2D arrays with de novo protein building blocks. Journal of the American Chemical Society. PMID 31050411 DOI: 10.1021/Jacs.9B01978  1
2019 McClure JP, Boltersdorf J, Baker DR, Farinha TG, Dzuricky N, Villegas CEP, Rocha AR, Leite MS. Structure-Property-Performance Relationship of Ultrathin Pd-Au Alloy Catalyst Layers for Low-Temperature Ethanol Oxidation in Alkaline Media. Acs Applied Materials & Interfaces. PMID 31044596 DOI: 10.1021/Acsami.9B01389  1
2019 Gross TM, Lahiri J, Golas A, Luo J, Verrier F, Kurzejewski JL, Baker DE, Wang J, Novak PF, Snyder MJ. Copper-containing glass ceramic with high antimicrobial efficacy. Nature Communications. 10: 1979. PMID 31040286 DOI: 10.1038/s41467-019-09946-9  0.01
2019 Baker DW. Studying Complex Interventions: Lessons from the AHRQ Safety Program for Perinatal Care. Joint Commission Journal On Quality and Patient Safety. 45: 229-230. PMID 31036327 DOI: 10.1016/j.jcjq.2019.02.001  0.01
2019 Bavinton BR, Prestage GP, Jin F, Phanuphak N, Grinsztejn B, Fairley CK, Baker D, Hoy J, Templeton DJ, Tee BK, Kelleher A, Grulich AE. Strategies used by gay male HIV serodiscordant couples to reduce the risk of HIV transmission from anal intercourse in three countries. Journal of the International Aids Society. 22: e25277. PMID 30983155 DOI: 10.1002/Jia2.25277  1
2019 Baker DW. Using Patient-Reported Outcomes to Evaluate Surgical Care: The Devil Is in the Details. Joint Commission Journal On Quality and Patient Safety. PMID 30944070 DOI: 10.1016/j.jcjq.2019.02.007  0.01
2019 Wong R, Al-Omary M, Baker D, Spratt N, Boyle A, Baker N, Howe P, Collins N. Cognitive dysfunction is associated with abnormal responses in cerebral blood flow in patients with single ventricular physiology: Novel insights from transcranial Doppler ultrasound. Congenital Heart Disease. PMID 30908884 DOI: 10.1111/chd.12763  1
2019 Baker DM, Colaizzi JL, Leite K, Buerki RA, Higby GJ, McCarthy RL, Ridgway C. Teaching History of Pharmacy in U.S. Pharmacy Schools. American Journal of Pharmaceutical Education. 83: 6500. PMID 30894765 DOI: 10.5688/ajpe6500  1
2019 Basak S, Nobrega RP, Tavella D, Deveau LM, Koga N, Tatsumi-Koga R, Baker D, Massi F, Matthews CR. Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 30877249 DOI: 10.1073/Pnas.1818744116  1
2019 Baker DC. Preface. Advances in Carbohydrate Chemistry and Biochemistry. 76: ix-x. PMID 30851745 DOI: 10.1016/S0065-2318(19)30022-8  0.01
2019 Marcandalli J, Fiala B, Ols S, Perotti M, de van der Schueren W, Snijder J, Hodge E, Benhaim M, Ravichandran R, Carter L, Sheffler W, Brunner L, Lawrenz M, Dubois P, Lanzavecchia A, ... Baker D, et al. Induction of Potent Neutralizing Antibody Responses by a Designed Protein Nanoparticle Vaccine for Respiratory Syncytial Virus. Cell. 176: 1420-1431.e17. PMID 30849373 DOI: 10.1016/J.Cell.2019.01.046  1
2019 Flueck C, Drought LG, Jones A, Patel A, Perrin AJ, Walker EM, Nofal SD, Snijders AP, Blackman MJ, Baker DA. Phosphodiesterase beta is the master regulator of cAMP signalling during malaria parasite invasion. Plos Biology. 17: e3000154. PMID 30794532 DOI: 10.1371/Journal.Pbio.3000154  1
2019 Baker D, Pryce G, Herrod SS, Schmierer K. Potential mechanisms of action related to the efficacy and safety of cladribine. Multiple Sclerosis and Related Disorders. 30: 176-186. PMID 30785074 DOI: 10.1016/J.Msard.2019.02.018  1
2019 Baker DA. What has de novo protein design taught us about protein folding and biophysics? Protein Science : a Publication of the Protein Society. PMID 30746840 DOI: 10.1002/Pro.3588  0.01
2019 Boudreaux BB, LaRue SM, Rademacher N, Neck D, Grasperge B, Wood C, Baker DG. Treatment of leiomyosarcoma in a tiger (Panthera tigris) with stereotactic radiotherapy. Veterinary Radiology & Ultrasound : the Official Journal of the American College of Veterinary Radiology and the International Veterinary Radiology Association. PMID 30746806 DOI: 10.1111/Vru.12720  0.01
2019 Anderson CE, Buser JR, Fleming AM, Strauch EM, Ladd PD, Englund J, Baker D, Yager P. An integrated device for the rapid and sensitive detection of the influenza hemagglutinin. Lab On a Chip. PMID 30724293 DOI: 10.1039/C8Lc00691A  1
2019 Nicholson T, Church C, Tsintzas K, Jones R, Breen L, Davis ET, Baker DJ, Jones SW. Vaspin promotes insulin sensitivity of elderly muscle and is upregulated in obesity. The Journal of Endocrinology. PMID 30721136 DOI: 10.1530/Joe-18-0528  1
2019 Valliere MA, Korman TP, Woodall NB, Khitrov GA, Taylor RE, Baker D, Bowie JU. A cell-free platform for the prenylation of natural products and application to cannabinoid production. Nature Communications. 10: 565. PMID 30718485 DOI: 10.1038/S41467-019-08448-Y  1
2019 Silva DA, Yu S, Ulge UY, Spangler JB, Jude KM, Labão-Almeida C, Ali LR, Quijano-Rubio A, Ruterbusch M, Leung I, Biary T, Crowley SJ, Marcos E, Walkey CD, Weitzner BD, ... Baker D, et al. De novo design of potent and selective mimics of IL-2 and IL-15. Nature. 565: 186-191. PMID 30626941 DOI: 10.2210/Pdb6Dg5/Pdb  1
2019 Paajanen P, Kettleborough G, López-Girona E, Giolai M, Heavens D, Baker D, Lister A, Cugliandolo F, Wilde G, Hein I, Macaulay I, Bryan GJ, Clark MD. A critical comparison of technologies for a plant genome sequencing project. Gigascience. PMID 30624602 DOI: 10.1093/Gigascience/Giy163  1
2019 Prunier C, Baker D, Ten Dijke P, Ritsma L. TGF-β Family Signaling Pathways in Cellular Dormancy. Trends in Cancer. 5: 66-78. PMID 30616757 DOI: 10.1016/J.Trecan.2018.10.010  1
2019 Chen Z, Boyken SE, Jia M, Busch F, Flores-Solis D, Bick MJ, Lu P, VanAernum ZL, Sahasrabuddhe A, Langan RA, Bermeo S, Brunette TJ, Mulligan VK, Carter LP, DiMaio F, ... ... Baker D, et al. Programmable design of orthogonal protein heterodimers. Nature. 565: 106-111. PMID 30568301 DOI: 10.2210/Pdb6Dlm/Pdb  1
2019 Park J, Selvaraj B, McShan AC, Boyken SE, Wei KY, Oberdorfer G, DeGrado W, Sgourakis NG, Cuneo MJ, Myles DA, Baker D. Author response: De novo design of a homo-trimeric amantadine-binding protein Elife. DOI: 10.7554/Elife.47839.Sa2  1
2019 Huber D, Chaplin WJ, Chontos A, Kjeldsen H, Christensen-Dalsgaard J, Bedding TR, Ball W, Brahm R, Espinoza N, Henning T, Jordán A, Sarkis P, Knudstrup E, Albrecht S, Grundahl F, ... Baker D, et al. A Hot Saturn Orbiting an Oscillating Late Subgiant Discovered byTESS The Astronomical Journal. 157: 245. DOI: 10.3847/1538-3881/Ab1488  0.01
2019 Baker D. Computationally designed protein activation National Science Review. 6: 609-610. DOI: 10.1093/Nsr/Nwz063  0.01
2019 Baker D, Fomukong-Boden A, Edwards S. 'Don't Follow Them, Look at Me!': Contemplating a Haptic Digital Prototype to Bridge the Conductor and Visually Impaired Performer. Music Education Research. 21: 295-314. DOI: 10.1080/14613808.2019.1605344  0.01
2019 Hooshyar SH, Martinello M, Yee J, Bartlett S, Read P, Baker D, Post J, Finlayson R, Bloch M, Doyle J, Shaw D, Hellard M, Petoumenos K, Marks P, Applegate T, et al. SAT-235-Low HCV reinfection incidence following DAA treatment scale-up in people living with HIV in Australia Journal of Hepatology. 70. DOI: 10.1016/S0618-8278(19)31468-9  1
2018 Baker DW, Whitehead NJ, Barlow M. Mycotic Coronary Aneurysms. Heart, Lung & Circulation. PMID 30686642 DOI: 10.1016/j.hlc.2018.12.004  0.01
2018 Garry DJ, Baker DA, Persad MD, Peresleni T, Kocis C, Demishev M. Progesterone effects on vaginal cytokines in women with a history of preterm birth. Plos One. 13: e0209346. PMID 30596707 DOI: 10.1371/journal.pone.0209346  1
2018 Khan AA, Davies AJ, Whitehead NJ, McGee M, Al-Omary MS, Baker D, Bhagwandeen R, Renner I, Majeed T, Hatton R, Collins NJ, Attia J, Boyle AJ. Targeting elevated left ventricular end-diastolic pressure following primary percutaneous coronary intervention for ST-segment elevation myocardial infarction - a phase one safety and feasibility study. European Heart Journal. Acute Cardiovascular Care. 2048872618819657. PMID 30569736 DOI: 10.1177/2048872618819657  1
2018 Day AL, Greisen P, Doyle L, Schena A, Stella N, Johnsson K, Baker D, Stoddard B. Unintended specificity of an engineered ligand-binding protein facilitated by unpredicted plasticity of the protein fold. Protein Engineering, Design & Selection : Peds. PMID 30566669 DOI: 10.1093/Protein/Gzy031  1
2018 Baker DA, Caswell HL, Eccles FJR. Self-compassion and depression, anxiety, and resilience in adults with epilepsy. Epilepsy & Behavior : E&B. 90: 154-161. PMID 30557784 DOI: 10.1016/j.yebeh.2018.11.025  1
2018 Large JM, Birchall K, Bouloc NS, Merritt AT, Smiljanic-Hurley E, Tsagris DJ, Wheldon MC, Ansell KH, Coombs PJ, Kettleborough CA, Whalley D, Stewart LB, Bowyer PW, Baker DA, Osborne SA. Potent inhibitors of malarial P. Falciparum protein kinase G: Improving the cell activity of a series of imidazopyridines. Bioorganic & Medicinal Chemistry Letters. PMID 30553738 DOI: 10.1016/J.Bmcl.2018.11.039  1
2018 Buechler C, Semler M, Baker DA, Newman C, Cornish JP, Chavez D, Guerra B, Lanford R, Brasky K, Kuhn JH, Johnson RF, O'Connor DH, Bailey AL. Subclinical Infection of Macaques and Baboons with A Baboon Simarterivirus. Viruses. 10. PMID 30544677 DOI: 10.3390/V10120701  1
2018 Wong CWM, Conti-Jerpe I, Raymundo LJ, Dingle C, Araujo G, Ponzo A, Baker DM. Whale Shark Tourism: Impacts on Coral Reefs in the Philippines. Environmental Management. PMID 30515531 DOI: 10.1007/S00267-018-1125-3  1
2018 Baker DC. Preface. Advances in Carbohydrate Chemistry and Biochemistry. 75: ix-x. PMID 30509402 DOI: 10.1016/S0065-2318(18)30014-3  0.01
2018 Romero Romero ML, Yang F, Lin YR, Toth-Petroczy A, Berezovsky IN, Goncearenco A, Yang W, Wellner A, Kumar-Deshmukh F, Sharon M, Baker D, Varani G, Tawfik DS. Simple yet functional phosphate-loop proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30504143 DOI: 10.1073/Pnas.1812400115  1
2018 Heffron AS, Mohr EL, Baker D, Haj AK, Buechler CR, Bailey A, Dudley DM, Newman CM, Mohns MS, Koenig M, Breitbach ME, Rasheed M, Stewart LM, Eickhoff J, Pinapati RS, et al. Antibody responses to Zika virus proteins in pregnant and non-pregnant macaques. Plos Neglected Tropical Diseases. 12: e0006903. PMID 30481182 DOI: 10.1371/Journal.Pntd.0006903  1
2018 Rombaut J, Maniyara RA, Bellman R, Acquard D, Baca A, Osmond J, Senaratne W, Quesada M, Baker DE, Mazumder P, Pruneri V. Antireflective Transparent Oleophobic Surface by Non-Interacting Cavities. Acs Applied Materials & Interfaces. PMID 30444107 DOI: 10.1021/Acsami.8B15507  1
2018 Mao Z, Álvarez-González C, Allen-Philbey K, De Trane S, Yildiz O, Campion T, Adams A, Turner BP, Marta M, Gnanapavan S, Espasandin M, Mathews J, Giovannoni G, Baker D, Schmierer K. Treating the ineligible: Disease modification in people with multiple sclerosis beyond NHS England commissioning policies. Multiple Sclerosis and Related Disorders. 27: 247-253. PMID 30419510 DOI: 10.1016/J.Msard.2018.11.001  1
2018 Shen H, Fallas JA, Lynch E, Sheffler W, Parry B, Jannetty N, Decarreau J, Wagenbach M, Vicente JJ, Chen J, Wang L, Dowling Q, Oberdorfer G, Stewart L, Wordeman L, ... Baker D, et al. De novo design of self-assembling helical protein filaments. Science (New York, N.Y.). 362: 705-709. PMID 30409885 DOI: 10.2210/Pdb6E9R/Pdb  0.01
2018 Akkermans J, Schapiro R, Müllensiefen D, Jakubowski K, Shanahan D, Baker D, Busch V, Lothwesen K, Elvers P, Fischinger T, Schlemmer K, Frieler K. Decoding emotions in expressive music performances: A multi-lab replication and extension study. Cognition & Emotion. 1-20. PMID 30409082 DOI: 10.1080/02699931.2018.1541312  1
2018 Callander D, Bourne C, Wand H, Stoové M, Hocking JS, de Wit J, Kaldor JM, Donovan B, Pell C, Finlayson R, Baker D, Forssman B, Tee BK, Kefalas B, Duck T, et al. Assessing the Impacts of Integrated Decision Support Software on Sexual Orientation Recording, Comprehensive Sexual Health Testing, and Detection of Infections Among Gay and Bisexual Men Attending General Practice: Observational Study. Jmir Medical Informatics. 6: e10808. PMID 30401672 DOI: 10.2196/10808  1
2018 Marcos E, Chidyausiku TM, McShan AC, Evangelidis T, Nerli S, Carter L, Nivón LG, Davis A, Oberdorfer G, Tripsianes K, Sgourakis NG, Baker D. De novo design of a non-local β-sheet protein with high stability and accuracy. Nature Structural & Molecular Biology. PMID 30374087 DOI: 10.1038/s41594-018-0141-6  1
2018 Vranjkovic O, Van Newenhizen E, Nordness ME, Blacktop JM, Urbanik LA, Mathy JC, McReynolds JR, Miller AM, Doncheck EM, Kloehn TM, Stinnett GS, Gerndt CH, Ketchesin KD, Baker DA, Seasholtz AF, et al. Enhanced CRFR1-dependent regulation of a ventral tegmental area to prelimbic cortex projection establishes susceptibility to stress-induced cocaine seeking. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30355627 DOI: 10.1523/Jneurosci.2080-18.2018  1
2018 Grulich AE, Guy R, Amin J, Jin F, Selvey C, Holden J, Schmidt HA, Zablotska I, Price K, Whittaker B, Chant K, Cooper C, McGill S, Telfer B, Yeung B, ... Baker D, et al. Population-level effectiveness of rapid, targeted, high-coverage roll-out of HIV pre-exposure prophylaxis in men who have sex with men: the EPIC-NSW prospective cohort study. The Lancet. Hiv. PMID 30343026 DOI: 10.1016/S2352-3018(18)30215-7  1
2018 Benavente ED, Oresegun DR, de Sessions PF, Walker EM, Roper C, Dombrowski JG, de Souza RM, Marinho CRF, Sutherland CJ, Hibberd ML, Mohareb F, Baker DA, Clark TG, Campino S. Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development. Scientific Reports. 8: 15429. PMID 30337594 DOI: 10.1038/S41598-018-33767-3  1
2018 Dubuisson N, Marta M, Gnanapavan S, Turner B, Baker D, Thomson A, Schmierer K, Giovannoni G. Inclusion criteria used in trials of people with progressive multiple sclerosis. Multiple Sclerosis (Houndmills, Basingstoke, England). 1352458518803769. PMID 30318994 DOI: 10.1177/1352458518803769  1
2018 Fang H, Gomes AR, Klages N, Pino P, Maco B, Walker EM, Zenonos ZA, Angrisano F, Baum J, Doerig C, Baker DA, Billker O, Brochet M. Epistasis studies reveal redundancy among calcium-dependent protein kinases in motility and invasion of malaria parasites. Nature Communications. 9: 4248. PMID 30315162 DOI: 10.1038/S41467-018-06733-W  1
2018 Baker DW. The Journal Welcomes New Leadership Team. Joint Commission Journal On Quality and Patient Safety. 44: 563. PMID 30243358 DOI: 10.1016/j.jcjq.2018.08.007  0.01
2018 Maguire JB, Boyken SE, Baker D, Kuhlman B. Correction to Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design. Journal of Chemical Theory and Computation. PMID 30221938 DOI: 10.1021/Acs.Jctc.8B00883  1
2018 Baker D, Pryce G, Amor S, Giovannoni G, Schmierer K. Learning from other autoimmunities to understand targeting of B cells to control multiple sclerosis. Brain : a Journal of Neurology. PMID 30212896 DOI: 10.1093/Brain/Awy239  1
2018 Dou J, Vorobieva AA, Sheffler W, Doyle LA, Park H, Bick MJ, Mao B, Foight GW, Lee MY, Gagnon LA, Carter L, Sankaran B, Ovchinnikov S, Marcos E, Huang PS, ... Baker D, et al. De novo design of a fluorescence-activating β-barrel. Nature. PMID 30209393 DOI: 10.1038/S41586-018-0509-0  1
2018 Jester B, Tinberg CE, Rich MS, Baker D, Fields S. Engineered biosensors from dimeric ligand-binding domains. Acs Synthetic Biology. PMID 30204430 DOI: 10.1021/Acssynbio.8B00242  1
2018 Williams SC, Schmaltz SP, Castro GM, Baker DW. Incidence and Method of Suicide in Hospitals in the United States. Joint Commission Journal On Quality and Patient Safety. PMID 30190221 DOI: 10.1016/j.jcjq.2018.08.002  1
2018 Tsagris DJ, Birchall K, Bouloc N, Large JM, Merritt A, Smiljanic-Hurley E, Wheldon M, Ansell KH, Kettleborough C, Whalley D, Stewart LB, Bowyer PW, Baker DA, Osborne SA. Trisubstituted thiazoles as potent and selective inhibitors of Plasmodium falciparum protein kinase G (PfPKG). Bioorganic & Medicinal Chemistry Letters. PMID 30174152 DOI: 10.1016/J.Bmcl.2018.08.028  1
2018 Buchko GW, Pulavarti SVSRK, Ovchinnikov V, Shaw EA, Rettie SA, Myler PJ, Karplus M, Szyperski T, Baker D, Bahl CD. Cytosolic expression, solution structures, and molecular dynamics simulation of genetically encodable disulfide-rich de novo designed peptides. Protein Science : a Publication of the Protein Society. PMID 30152054 DOI: 10.1002/Pro.3453  0.01
2018 Gushchina S, Pryce G, Yip PK, Wu D, Pallier P, Giovannoni G, Baker D, Bo X. Increased expression of colony-stimulating factor-1 in mouse spinal cord with experimental autoimmune encephalomyelitis correlates with microglial activation and neuronal loss. Glia. PMID 30144320 DOI: 10.1002/Glia.23464  1
2018 Mao Z, Álvarez-Gonzalez C, De Trane S, Yildiz O, Albor C, Doctor G, Soon D, Pepper G, Turner BP, Marta M, Mathews J, Giovannoni G, Baker D, Schmierer K. Cladribine: Off-label disease modification for people with multiple sclerosis in resource-poor settings? Multiple Sclerosis Journal - Experimental, Translational and Clinical. 4: 2055217318783767. PMID 30090639 DOI: 10.1177/2055217318783767  1
2018 Man S, Sanchez Duffhues G, Ten Dijke P, Baker D. The therapeutic potential of targeting the endothelial-to-mesenchymal transition. Angiogenesis. PMID 30076548 DOI: 10.1007/S10456-018-9639-0  0.01
2018 Pryce G, Baker D. Oligoclonal bands in multiple sclerosis; Functional significance and therapeutic implications. Does the specificity matter? Multiple Sclerosis and Related Disorders. 25: 131-137. PMID 30071507 DOI: 10.1016/J.Msard.2018.07.030  1
2018 Kang K, Ni Y, Li J, Imamovic L, Sarkar C, Kobler MD, Heshiki Y, Zheng T, Kumari S, Wong JCY, Archna A, Wong CWM, Dingle C, Denizen S, Baker DM, et al. The Environmental Exposures and Inner- and Intercity Traffic Flows of the Metro System May Contribute to the Skin Microbiome and Resistome. Cell Reports. 24: 1190-1202.e5. PMID 30067975 DOI: 10.1016/J.Celrep.2018.06.109  1
2018 Baker DJ, Garnett ST, O'Connor J, Ehmke G, Clarke RH, Woinarski JCZ, McGeoch MA. The conservation of abundance in nonthreatened species. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 30047186 DOI: 10.1111/cobi.13197  1
2018 Bavinton BR, Pinto AN, Phanuphak N, Grinsztejn B, Prestage GP, Zablotska-Manos IB, Jin F, Fairley CK, Moore R, Roth N, Bloch M, Pell C, McNulty AM, Baker D, Hoy J, et al. Viral suppression and HIV transmission in serodiscordant male couples: an international, prospective, observational, cohort study. The Lancet. Hiv. PMID 30025681 DOI: 10.1016/S2352-3018(18)30132-2  1
2018 Perkins MJ, Mak YKY, Tao LSR, Wong ATL, Yau JKC, Baker DM, Leung KMY. Short-term tissue decomposition alters stable isotope values and C:N ratio, but does not change relationships between lipid content, C:N ratio, and Δδ13C in marine animals. Plos One. 13: e0199680. PMID 30020988 DOI: 10.1371/Journal.Pone.0199680  0.01
2018 van Staalduinen J, Baker D, Ten Dijke P, van Dam H. Epithelial-mesenchymal-transition-inducing transcription factors: new targets for tackling chemoresistance in cancer? Oncogene. PMID 30002444 DOI: 10.1038/S41388-018-0378-X  1
2018 Jacobs BM, Ammoscato F, Giovannoni G, Baker D, Schmierer K. Cladribine: mechanisms and mysteries in multiple sclerosis. Journal of Neurology, Neurosurgery, and Psychiatry. PMID 29991490 DOI: 10.1136/Jnnp-2017-317411  1
2018 Nemec EC, Baker DM, Zhang D, Dintzner M. Development of valid and reliable tools for student evaluation of teaching. Currents in Pharmacy Teaching & Learning. 10: 549-557. PMID 29986813 DOI: 10.1016/j.cptl.2018.02.009  0.01
2018 Lau YK, Baytshtok V, Howard TA, Fiala BM, Morgan JM, Carter LP, Baker D, Lima CD, Bahl CD. Discovery and engineering of enhanced SUMO protease enzymes. The Journal of Biological Chemistry. PMID 29976752 DOI: 10.1074/Jbc.Ra118.004146  0.01
2018 Perrin AJ, Collins CR, Russell MRG, Collinson LM, Baker DA, Blackman MJ. The Actinomyosin Motor Drives Malaria Parasite Red Blood Cell Invasion but Not Egress. Mbio. 9. PMID 29970464 DOI: 10.1128/Mbio.00905-18  1
2018 Keasar C, McGuffin LJ, Wallner B, Chopra G, Adhikari B, Bhattacharya D, Blake L, Bortot LO, Cao R, Dhanasekaran BK, Dimas I, Faccioli RA, Faraggi E, Ganzynkowicz R, Ghosh S, ... ... Baker D, et al. An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports. 8: 9939. PMID 29967418 DOI: 10.1038/s41598-018-26812-8  1
2018 Geiger-Schuller K, Sforza K, Yuhas M, Parmeggiani F, Baker D, Barrick D. Extreme stability in de novo-designed repeat arrays is determined by unusually stable short-range interactions. Proceedings of the National Academy of Sciences of the United States of America. PMID 29959204 DOI: 10.1073/Pnas.1800283115  1
2018 Archana A, Thibodeau B, Geeraert N, Xu MN, Kao SJ, Baker DM. Nitrogen sources and cycling revealed by dual isotopes of nitrate in a complex urbanized environment. Water Research. 142: 459-470. PMID 29913387 DOI: 10.1016/J.Watres.2018.06.004  1
2018 Currie TE, Turchin P, Whitehouse H, François P, Feeney K, Mullins D, Hoyer D, Collins C, Grohmann S, Savage P, Mendel-Gleason G, Turner E, Dupeyron A, Cioni E, Reddish J, ... ... Baker D, et al. Reply to Tosh et al.: Quantitative analyses of cultural evolution require engagement with historical and archaeological research. Proceedings of the National Academy of Sciences of the United States of America. PMID 29903903 DOI: 10.1073/Pnas.1807312115  1
2018 McGee M, Ferreira D, Tvedten O, Mahmoodi E, Whitehead N, Baker D, Sugito S, Davies A, Turner S, Boyle A. Specificity of Myocardial Perfusion Imaging: Issues With Proposed MBS Item Review. Heart, Lung & Circulation. PMID 29891247 DOI: 10.1016/j.hlc.2018.04.304  1
2018 Colaizzi JL, Buerki RA, Baker DM. Response to Pharmacy History Courses May - and Should - Offer More Than Professionalism. American Journal of Pharmaceutical Education. 82: 7089. PMID 29867250 DOI: 10.5688/ajpe7089  1
2018 Yildiz O, Mao Z, Adams A, Dubuisson N, Allen-Philbey K, Giovannoni G, Malaspina A, Baker D, Gnanapavan S, Schmierer K. Disease activity in progressive multiple sclerosis can be effectively reduced by cladribine. Multiple Sclerosis and Related Disorders. 24: 20-27. PMID 29860198 DOI: 10.1016/J.Msard.2018.05.010  1
2018 Nicholson T, Church C, Baker DJ, Jones SW. The role of adipokines in skeletal muscle inflammation and insulin sensitivity. Journal of Inflammation (London, England). 15: 9. PMID 29760587 DOI: 10.1186/s12950-018-0185-8  1
2018 Rasinski KA, Schmaltz SP, Williams SC, Baker DW. Trends in Results of HBIPS National Performance Measures and Association With Year of Adoption. Psychiatric Services (Washington, D.C.). appips201700468. PMID 29716447 DOI: 10.1176/appi.ps.201700468  1
2018 Baker DW, Yendro S. Setting Achievable Benchmarks for Value-Based Payments: No Perfect Solution. Jama. PMID 29710252 DOI: 10.1001/jama.2018.2360  0.01
2018 McClure JP, Grew KN, Baker DR, Gobrogge E, Das N, Chu D. Harvesting resonantly-trapped light for small molecule oxidation reactions at the Au/α-FeO interface. Nanoscale. PMID 29664495 DOI: 10.1039/C8Nr01330F  1
2018 Baker D, Eccles FJR, Caswell HL. Correlates of stigma in adults with epilepsy: A systematic review of quantitative studies. Epilepsy & Behavior : E&B. 83: 67-80. PMID 29660506 DOI: 10.1016/j.yebeh.2018.02.016  1
2018 Maguire JB, Boyken SE, Baker D, Kuhlman B. Rapid Sampling of Hydrogen Bond Networks for Computational Protein Design. Journal of Chemical Theory and Computation. PMID 29652499 DOI: 10.1021/Acs.Jctc.8B00033  1
2018 Baker DW, Chassin MR. Holding Providers Accountable for Health Care Outcomes. Annals of Internal Medicine. 168: 527. PMID 29610907 DOI: 10.7326/L17-0708  1
2018 Ceronie B, Jacobs BM, Baker D, Dubuisson N, Mao Z, Ammoscato F, Lock H, Longhurst HJ, Giovannoni G, Schmierer K. Cladribine treatment of multiple sclerosis is associated with depletion of memory B cells. Journal of Neurology. PMID 29550884 DOI: 10.1007/S00415-018-8830-Y  1
2018 Crook ZR, Sevilla GP, Friend D, Brusniak MY, Bandaranayake AD, Clarke M, Gewe M, Mhyre AJ, Baker D, Strong RK, Bradley P, Olson JM. Publisher Correction: Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets. Nature Communications. 9: 1072. PMID 29523778 DOI: 10.1038/S41467-018-03350-5  1
2018 Sutherland MC, Jarodsky JM, Ovchinnikov S, Baker D, Kranz RG. Structurally Mapping Endogenous Heme in the CcmCDE Membrane Complex for Cytochrome c Biogenesis. Journal of Molecular Biology. PMID 29518410 DOI: 10.1016/J.Jmb.2018.01.022  1
2018 Davis-Hayes C, Baker DR, Bottiglieri TS, Levine WN, Desai N, Gossett JD, Noble JM. Medical retirement from sport after concussions: A practical guide for a difficult discussion. Neurology. Clinical Practice. 8: 40-47. PMID 29517059 DOI: 10.1212/CPJ.0000000000000424  1
2018 Park H, Ovchinnikov S, Kim DE, DiMaio F, Baker D. Protein homology model refinement by large-scale energy optimization. Proceedings of the National Academy of Sciences of the United States of America. PMID 29507254 DOI: 10.1073/Pnas.1719115115  1
2018 Lu P, Min D, DiMaio F, Wei KY, Vahey MD, Boyken SE, Chen Z, Fallas JA, Ueda G, Sheffler W, Mulligan VK, Xu W, Bowie JU, Baker D. Accurate computational design of multipass transmembrane proteins. Science (New York, N.Y.). 359: 1042-1046. PMID 29496880 DOI: 10.1126/Science.Aaq1739  1
2018 Sockolosky JT, Trotta E, Parisi G, Picton L, Su LL, Le AC, Chhabra A, Silveria SL, George BM, King IC, Tiffany MR, Jude K, Sibener LV, Baker D, Shizuru JA, et al. Selective targeting of engineered T cells using orthogonal IL-2 cytokine-receptor complexes. Science (New York, N.Y.). 359: 1037-1042. PMID 29496879 DOI: 10.1126/Science.Aar3246  1
2018 Baker D, McMurchie M, Farr V. Hepatitis C in Australia - a role for general practitioners? The Medical Journal of Australia. 208: 190. PMID 29490227 DOI: 10.5694/mja17.00733  0.01
2018 Baker DW. Improving Antimicrobial Stewardship Programs: A Call for Papers. Joint Commission Journal On Quality and Patient Safety. 44: 63-64. PMID 29389460 DOI: 10.1016/j.jcjq.2017.11.003  0.01
2018 Silva DA, Stewart L, Lam KH, Jin R, Baker D. Structures and disulfide cross-linking of de novo designed therapeutic mini-proteins. The Febs Journal. PMID 29389072 DOI: 10.1111/Febs.14394  1
2018 Baker DM, Freeman CJ, Wong JCY, Fogel ML, Knowlton N. Climate change promotes parasitism in a coral symbiosis. The Isme Journal. PMID 29379177 DOI: 10.1038/S41396-018-0046-8  1
2018 Sahasrabuddhe A, Hsia Y, Busch F, Sheffler W, King NP, Baker D, Wysocki VH. Confirmation of intersubunit connectivity and topology of designed protein complexes by native MS. Proceedings of the National Academy of Sciences of the United States of America. PMID 29351988 DOI: 10.1073/Pnas.1713646115  1
2018 Murphy AC, Muldoon SF, Baker D, Lastowka A, Bennett B, Yang M, Bassett DS. Structure, function, and control of the human musculoskeletal network. Plos Biology. 16: e2002811. PMID 29346370 DOI: 10.1371/Journal.Pbio.2002811  0.01
2018 Meerstein-Kessel L, van der Lee R, Stone W, Lanke K, Baker DA, Alano P, Silvestrini F, Janse CJ, Khan SM, van de Vegte-Bolmer M, Graumans W, Siebelink-Stoter R, Kooij TWA, Marti M, Drakeley C, et al. Probabilistic data integration identifies reliable gametocyte-specific proteins and transcripts in malaria parasites. Scientific Reports. 8: 410. PMID 29323249 DOI: 10.1038/S41598-017-18840-7  0.01
2018 Crnosija N, Baker D. Associations between Supplement Information Sources and Menopausal Women's Consumption of Herbal Supplements Journal of Womens Health, Issues and Care. 2018: 1-5. DOI: 10.4172/2325-9795.1000324  0.01
2018 Collins KA, Collins KI, Pepper J, Labadie-Bartz J, Stassun KG, Gaudi BS, Bayliss D, Bento J, COLÓN KD, Feliz D, James D, Johnson MC, Kuhn RB, Lund MB, Penny MT, ... Baker D, et al. The KELT Follow-up Network and Transit False-positive Catalog: Pre-vetted False Positives for TESS The Astronomical Journal. 156: 234. DOI: 10.3847/1538-3881/Aae582  0.01
2018 Marcos E, Chidyausiku TM, McShan AC, Evangelidis T, Nerli S, Carter L, Nivón LG, Davis A, Oberdorfer G, Tripsianes K, Sgourakis NG, Baker D. De novo design of a non-local beta-sheet protein with high stability and accuracy Nature Structural & Molecular Biology. 25: 1028-1034. DOI: 10.2210/Pdb6E5C/Pdb  1
2018 Chen Z, Flores-Solis D, Sgourakis NG, Baker D. De Novo Design of a Protein Heterodimer with Specificity Mediated by Hydrogen Bond Networks Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb6Dmp/Pdb  1
2018 Buchko G, Bahl C, Baker D. Chemical shifts for the de novo mini protein gHH_44 in the reduced state. Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27420  1
2018 Pulavarti SVSRK, Shaw E, Bahl C, Garry B, Baker D, Szyperski T. Backbone 1H, 13C, and 15N Chemical Shift Assignments for gHEEE_02 in presence of 10 mM TCEP Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27269  1
2018 Persad MD, Perseleni T, Baker D, Pimentel V, Buckley A, Garretto D. Are Vitamin D Levels Lower in the Breast Milk of Bariatric Surgery Patients? [18N] Obstetrics & Gynecology. 131. DOI: 10.1097/01.Aog.0000533114.69938.D6  1
2018 Demishev M, Persad MD, Peresleni T, Baker D, Hilsenroth J, Garry D. Progesterone Effects on Vaginal Cytokines in Women with a History of Preterm Birth [15E] Obstetrics & Gynecology. 131. DOI: 10.1097/01.Aog.0000533034.50954.C2  1
2018 Persad MD, Perseleni T, Baker D, Pimentel V, Garretto D. 793: Does maternal vitamin D deficiency correlate with lower vitamin D levels in breast milk in women with a history of bariatric surgery? American Journal of Obstetrics and Gynecology. 218. DOI: 10.1016/J.Ajog.2017.11.325  1
2018 Wilson JF, Baker D, Cheney J, Cook M, Ellis M, Freestone R, Gardner D, Geen G, Hemming R, Hodgers D, Howarth S, Jupp A, Lowe N, Orridge S, Shaw M, et al. A role for artificial night-time lighting in long-term changes in populations of 100 widespread macro-moths in UK and Ireland: a citizen-science study Journal of Insect Conservation. 22: 189-196. DOI: 10.1007/S10841-018-0052-1  1
2017 Zhang H, Yang J, Gray S, Brown JA, Ketcham TD, Baker DE, Carapella A, Davis RW, Arroyo JG, Nolan DA. Transparent Er-Doped YO Ceramics with Long Optical Coherence Lifetime. Acs Omega. 2: 3739-3744. PMID 31457688 DOI: 10.1021/acsomega.7b00541  1
2017 Baker DB, Johnson LT, Confesor RB, Crumrine JP. Vertical Stratification of Soil Phosphorus as a Concern for Dissolved Phosphorus Runoff in the Lake Erie Basin. Journal of Environmental Quality. 46: 1287-1295. PMID 29293833 DOI: 10.2134/jeq2016.09.0337  1
2017 Crook ZR, Sevilla GP, Friend D, Brusniak MY, Bandaranayake AD, Clarke M, Gewe M, Mhyre AJ, Baker D, Strong RK, Bradley P, Olson JM. Mammalian display screening of diverse cystine-dense peptides for difficult to drug targets. Nature Communications. 8: 2244. PMID 29269835 DOI: 10.1038/S41467-017-02098-8  1
2017 Turchin P, Currie TE, Whitehouse H, François P, Feeney K, Mullins D, Hoyer D, Collins C, Grohmann S, Savage P, Mendel-Gleason G, Turner E, Dupeyron A, Cioni E, Reddish J, ... ... Baker D, et al. Quantitative historical analysis uncovers a single dimension of complexity that structures global variation in human social organization. Proceedings of the National Academy of Sciences of the United States of America. PMID 29269395 DOI: 10.1073/Pnas.1708800115  1
2017 Baker DA, Drought LG, Flueck C, Nofal SD, Patel A, Penzo M, Walker EM. Cyclic nucleotide signalling in malaria parasites. Open Biology. 7. PMID 29263246 DOI: 10.1098/Rsob.170213  1
2017 Dubuisson N, Baker D, Kang AS, Pryce G, Marta M, Visser LH, Hofmann WE, Gnanapavan S, Giovannoni G, Schmierer K. Alemtuzumab depletion failure can occur in multiple sclerosis. Immunology. PMID 29247512 DOI: 10.1111/Imm.12879  1
2017 Hosseinzadeh P, Bhardwaj G, Mulligan VK, Shortridge MD, Craven TW, Pardo-Avila F, Rettie SA, Kim DE, Silva DA, Ibrahim YM, Webb IK, Cort JR, Adkins JN, Varani G, Baker D. Comprehensive computational design of ordered peptide macrocycles. Science (New York, N.Y.). 358: 1461-1466. PMID 29242347 DOI: 10.1126/Science.Aap7577  1
2017 Butterfield GL, Lajoie MJ, Gustafson HH, Sellers DL, Nattermann U, Ellis D, Bale JB, Ke S, Lenz GH, Yehdego A, Ravichandran R, Pun SH, King NP, Baker D. Evolution of a designed protein assembly encapsulating its own RNA genome. Nature. PMID 29236688 DOI: 10.1038/Nature25157  1
2017 Collier IA, Baker DM. Creation of an active learning healthcare communications course using simulations relevant to pharmacy practice. Currents in Pharmacy Teaching & Learning. 9: 626-632. PMID 29233435 DOI: 10.1016/j.cptl.2017.03.012  0.01
2017 Nordenfelt P, Moore TI, Mehta SB, Kalappurakkal JM, Swaminathan V, Koga N, Lambert TJ, Baker D, Waters JC, Oldenbourg R, Tani T, Mayor S, Waterman CM, Springer TA. Direction of actin flow dictates integrin LFA-1 orientation during leukocyte migration. Nature Communications. 8: 2047. PMID 29229906 DOI: 10.1038/S41467-017-01848-Y  1
2017 Cardarelli RA, Jones K, Pisella LI, Wobst HJ, McWilliams LJ, Sharpe PM, Burnham MP, Baker DJ, Chudotvorova I, Guyot J, Silayeva L, Morrow DH, Dekker N, Zicha S, Davies PA, et al. The small molecule CLP257 does not modify activity of the K+-Cl- co-transporter KCC2 but does potentiate GABAA receptor activity. Nature Medicine. 23: 1394-1396. PMID 29216042 DOI: 10.1038/nm.4442  1
2017 Ruz-Maldonado I, Pingitore A, Liu B, Atanes P, Huang GC, Baker D, Alonso FJ, Bermúdez-Silva FJ, Persaud SJ. LH-21 and Abn-CBD improve β-cell function in isolated human and mouse islets through GPR55-dependent and -independent signalling. Diabetes, Obesity & Metabolism. PMID 29205751 DOI: 10.1111/Dom.13180  1
2017 Forghany Z, Robertson F, Lundby A, Olsen JV, Baker DA. Control of endothelial cell tube formation by Notch ligand intracellular domain interactions with activator protein 1 (AP-1). The Journal of Biological Chemistry. PMID 29196606 DOI: 10.1074/Jbc.M117.819045  1
2017 Agez M, Schultz P, Medina I, Baker DJ, Burnham MP, Cardarelli RA, Conway LC, Garnier K, Geschwindner S, Gunnarsson A, McCall EJ, Frechard A, Audebert S, Deeb TZ, Moss SJ, et al. Molecular architecture of potassium chloride co-transporter KCC2. Scientific Reports. 7: 16452. PMID 29184062 DOI: 10.1038/s41598-017-15739-1  0.01
2017 Baker DC. Preface. Advances in Carbohydrate Chemistry and Biochemistry. 74: ix-x. PMID 29173728 DOI: 10.1016/S0065-2318(17)30012-4  0.01
2017 van Ijzendoorn DGP, Forghany Z, Liebelt F, Vertegaal AC, Jochemsen AG, Bovée JVMG, Szuhai K, Baker DA. Functional Analyses of a Human Vascular Tumor FOS Variant Identify a Novel Degradation Mechanism and a link to Tumorigenesis. The Journal of Biological Chemistry. PMID 29150442 DOI: 10.1074/Jbc.C117.815845  1
2017 Baker D, Giovannoni G, Schmierer K. Marked neutropenia: Significant but rare in people with multiple sclerosis after alemtuzumab treatment. Multiple Sclerosis and Related Disorders. 18: 181-183. PMID 29141806 DOI: 10.1016/J.Msard.2017.09.028  1
2017 Baker DR, Kulick ER, Boehme AK, Noble JM. Effects of the New York State Concussion Management and Awareness Act ("Lystedt Law") on Concussion-Related Emergency Health Care Utilization Among Adolescents, 2005-2015. The American Journal of Sports Medicine. 363546517738742. PMID 29135276 DOI: 10.1177/0363546517738742  1
2017 Hamilton MP, Hetrick SE, Mihalopoulos C, Baker D, Browne V, Chanen AM, Pennell K, Purcell R, Stavely H, McGorry PD. Identifying attributes of care that may improve cost-effectiveness in the youth mental health service system. The Medical Journal of Australia. 207: S27-S37. PMID 29129184 DOI: 10.5694/mja17.00972  1
2017 Hamilton MP, Hetrick SE, Mihalopoulos C, Baker D, Browne V, Chanen AM, Pennell K, Purcell R, Stavely H, McGorry PD. Targeting mental health care attributes by diagnosis and clinical stage: the views of youth mental health clinicians. The Medical Journal of Australia. 207: S19-S26. PMID 29129183 DOI: 10.5694/mja17.00692  1
2017 Biggs EK, Liang L, Naylor J, Madalli S, Collier R, Coghlan MP, Baker DJ, Hornigold DC, Ravn P, Reimann F, Gribble FM. Development and characterisation of a novel glucagon like peptide-1 receptor antibody. Diabetologia. PMID 29119245 DOI: 10.1007/S00125-017-4491-0  1
2017 McReynolds JR, Doncheck EM, Li Y, Vranjkovic O, Graf EN, Ogasawara D, Cravatt BF, Baker DA, Liu QS, Hillard CJ, Mantsch JR. Stress Promotes Drug Seeking Through Glucocorticoid-Dependent Endocannabinoid Mobilization in the Prelimbic Cortex. Biological Psychiatry. PMID 29100630 DOI: 10.1016/J.Biopsych.2017.09.024  1
2017 Conway LC, Cardarelli RA, Moore YE, Jones K, McWilliams LJ, Baker DJ, Burnham MP, Bürli RW, Wang Q, Brandon NJ, Moss SJ, Deeb TZ. N-ethylmaleimide increases KCC2 activity by modulating transporter phosphorylation. The Journal of Biological Chemistry. PMID 29092909 DOI: 10.1074/jbc.M117.817841  1
2017 Younger D, Berger S, Baker D, Klavins E. High-throughput characterization of protein-protein interactions by reprogramming yeast mating. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087945 DOI: 10.1073/Pnas.1705867114  0.01
2017 Swaminathan V, Kalappurakkal JM, Mehta SB, Nordenfelt P, Moore TI, Koga N, Baker DA, Oldenbourg R, Tani T, Mayor S, Springer TA, Waterman CM. Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions. Proceedings of the National Academy of Sciences of the United States of America. 114: 10648-10653. PMID 29073038 DOI: 10.1073/Pnas.1701136114  1
2017 Van Patten WJ, Walder R, Adhikari A, Okoniewski SR, Ravichandran R, Tinberg CE, Baker D, Perkins TT. Improved Free-Energy Landscape Quantification Illustrated with a Computationally Designed Protein-Ligand Interaction. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 29069529 DOI: 10.1002/Cphc.201701147  1
2017 Sussman ZW, Peterson RL, Connery AK, Baker DA, Kirkwood MW. Utility of matrix reasoning as an embedded performance validity indicator in pediatric mild traumatic brain injury. Applied Neuropsychology. Child. 1-6. PMID 29058467 DOI: 10.1080/21622965.2017.1382359  1
2017 Dubuisson N, Bauer A, Buckley M, Gilbert R, Paterson A, Marta M, Gnanapavan S, Turner B, Baker D, Giovannoni G, Schmierer K, Thomson A. Validation of an environmentally-friendly and affordable cardboard 9-hole peg test. Multiple Sclerosis and Related Disorders. 17: 172-176. PMID 29055452 DOI: 10.1016/J.Msard.2017.08.002  1
2017 Ouberai MM, Dos Santos ALG, Kinna S, Madalli S, Hornigold DC, Baker D, Naylor J, Sheldrake L, Corkill DJ, Hood J, Vicini P, Uddin S, Bishop S, Varley PG, Welland ME. Controlling the bioactivity of a peptide hormone in vivo by reversible self-assembly. Nature Communications. 8: 1026. PMID 29044101 DOI: 10.1038/S41467-017-01114-1  1
2017 Maiga AW, Deppen SA, Pinkerman R, Callaway-Lane C, Massion PP, Dittus RS, Lambright ES, Nesbitt JC, Baker D, Grogan EL. Timeliness of Care and Lung Cancer Tumor-Stage Progression: How Long Can We Wait? The Annals of Thoracic Surgery. PMID 29033012 DOI: 10.1016/j.athoracsur.2017.06.051  0.01
2017 Dou J, Doyle L, Greisen PJ, Schena A, Park H, Johnsson K, Stoddard BL, Baker D. Sampling and Energy Evaluation Challenges in Ligand Binding Protein Design. Protein Science : a Publication of the Protein Society. PMID 28980354 DOI: 10.1002/Pro.3317  1
2017 Dang B, Wu H, Mulligan VK, Mravic M, Wu Y, Lemmin T, Ford A, Silva DA, Baker D, DeGrado WF. De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973862 DOI: 10.1073/Pnas.1710695114  1
2017 Baker DW. Age-Related Differences in Hospital Quality of Care for Acute Myocardial Infarction: Getting to the Heart of the Matter. Annals of Internal Medicine. PMID 28973261 DOI: 10.7326/M17-2363  0.01
2017 Wheeler DS, Ebben AL, Kurtoglu B, Lovell ME, Bohn AT, Jasek IA, Baker DA, Mantsch JR, Gasser PJ, Wheeler RA. Corticosterone regulates both naturally occurring and cocaine-induced dopamine signaling by selectively decreasing dopamine uptake. The European Journal of Neuroscience. PMID 28965353 DOI: 10.1111/Ejn.13730  1
2017 Chevalier A, Silva DA, Rocklin GJ, Hicks DR, Vergara R, Murapa P, Bernard SM, Zhang L, Lam KH, Yao G, Bahl CD, Miyashita SI, Goreshnik I, Fuller JT, Koday MT, ... Baker D, et al. Massively parallel de novo protein design for targeted therapeutics. Nature. PMID 28953867 DOI: 10.1038/Nature23912  1
2017 Ovchinnikov S, Park H, Kim D, DiMaio F, Baker D. Protein structure prediction using Rosetta in CASP12. Proteins. PMID 28940798 DOI: 10.1002/Prot.25390  1
2017 Bick MJ, Greisen PJ, Morey KJ, Antunes MS, La D, Sankaran B, Reymond L, Johnsson K, Medford JI, Baker D. Computational design of environmental sensors for the potent opioid fentanyl. Elife. 6. PMID 28925919 DOI: 10.7554/Elife.28909  1
2017 Park H, Kim D, Ovchinnikov S, Baker D, DiMaio F. Automatic structure prediction of oligomeric assemblies using Robetta in CASP12. Proteins. PMID 28913931 DOI: 10.1002/Prot.25387  1
2017 Ferrer PE, Bloch M, Roth N, Finlayson R, Baker D, Koh K, Orth D, Urbaityte R, Brown D, Drummond F. A retrospective clinical audit of general practices in Australia to determine the motivation for switch to dolutegravir/abacavir/lamivudine and clinical outcomes. International Journal of Std & Aids. 956462417730474. PMID 28901212 DOI: 10.1177/0956462417730474  1
2017 Yeh CT, Brunette TJ, Baker D, McIntosh-Smith S, Parmeggiani F. Elfin: an algorithm for the computational design of custom three-dimensional structures from modular repeat protein building blocks. Journal of Structural Biology. PMID 28890160 DOI: 10.1016/J.Jsb.2017.09.001  1
2017 Petoumenos K, Huang R, Hoy J, Bloch M, Templeton DJ, Baker D, Giles M, Law MG, Cooper DA. Prevalence of self-reported comorbidities in HIV positive and HIV negative men who have sex with men over 55 years-The Australian Positive & Peers Longevity Evaluation Study (APPLES). Plos One. 12: e0184583. PMID 28886173 DOI: 10.1371/Journal.Pone.0184583  1
2017 Baker DP, Smith WC, Muñoz IG, Jeon H, Fu T, Leon J, Salinas D, Horvatek R. The Population Education Transition Curve: Education Gradients Across Population Exposure to New Health Risks. Demography. PMID 28875332 DOI: 10.1007/s13524-017-0608-9  1
2017 Baker DA, Stewart LB, Large JM, Bowyer PW, Ansell KH, Jiménez-Díaz MB, El Bakkouri M, Birchall K, Dechering KJ, Bouloc NS, Coombs PJ, Whalley D, Harding DJ, Smiljanic-Hurley E, Wheldon MC, et al. A potent series targeting the malarial cGMP-dependent protein kinase clears infection and blocks transmission. Nature Communications. 8: 430. PMID 28874661 DOI: 10.1038/S41467-017-00572-X  1
2017 Moody JD, Levy S, Mathieu J, Xing Y, Kim W, Dong C, Tempel W, Robitaille AM, Dang LT, Ferreccio A, Detraux D, Sidhu S, Zhu L, Carter L, Xu C, ... Baker D, et al. First critical repressive H3K27me3 marks in embryonic stem cells identified using designed protein inhibitor. Proceedings of the National Academy of Sciences of the United States of America. PMID 28864533 DOI: 10.1073/Pnas.1706907114  1
2017 Wang Y, Lee S, Ha Y, Lam W, Chen SR, Dutschman GE, Gullen EA, Grill SP, Cheng Y, Fürstner A, Francis S, Baker DC, Yang X, Lee KH, Cheng YC. Tylophorine Analogs Allosterically Regulates Heat Shock Cognate Protein 70 And Inhibits Hepatitis C Virus Replication. Scientific Reports. 7: 10037. PMID 28855547 DOI: 10.1038/S41598-017-08815-Z  1
2017 Baker DW. Improving Pain Management and Safe Use of Opioids: A Call for Papers. Joint Commission Journal On Quality and Patient Safety. 43: 492. PMID 28844235 DOI: 10.1016/j.jcjq.2017.07.001  0.01
2017 Afolabi D, Albor C, Zalewski L, Altmann DR, Baker D, Schmierer K. Positive impact of cladribine on quality of life in people with relapsing multiple sclerosis. Multiple Sclerosis (Houndmills, Basingstoke, England). 1352458517726380. PMID 28817997 DOI: 10.1177/1352458517726380  1
2017 Baker DW, Chassin MR. Holding Providers Accountable for Health Care Outcomes. Annals of Internal Medicine. PMID 28806793 DOI: 10.7326/M17-0691  1
2017 Will S, Hornigold DC, Baker DJ, Coghlan MP, Mesquita M, Trevaskis JL, Naylor J. Gut check on diabesity: leveraging gut mechanisms for the treatment of type 2 diabetes and obesity. Current Opinion in Pharmacology. 37: 10-15. PMID 28802873 DOI: 10.1016/j.coph.2017.07.010  1
2017 Lin YR, Koga N, Vorobiev SM, Baker D. Cyclic oligomer design with de novo αβ-proteins. Protein Science : a Publication of the Protein Society. PMID 28801928 DOI: 10.1002/Pro.3270  1
2017 Pryce G, Baker D. Antidote to cannabinoid intoxication: Inverse cannabinoid receptor one (CB1) agonism by N-(Piperidin-1-yl)-5-(4-iodophenyl)-1-(2,4-dichlorophenyl)-4-methyl-1H-pyrazole-3-carboxamidse (AM251) reverses the hypothermic effects of cannabinoid receptor one agonism by 1-Naphthalenyl [4-(pentyloxy)-1-naphthalenyl] methanone (CB13) in mice. British Journal of Pharmacology. PMID 28800377 DOI: 10.1111/Bph.13973  1
2017 Anishchenko I, Ovchinnikov S, Kamisetty H, Baker D. Origins of coevolution between residues distant in protein 3D structures. Proceedings of the National Academy of Sciences of the United States of America. PMID 28784799 DOI: 10.1073/Pnas.1702664114  1
2017 Weiss CH, Baker DW, Tulas K, Weiner S, Bechel M, Rademaker A, Fought A, Wunderink RG, Persell SD. A Critical Care Clinician Survey Comparing Attitudes and Perceived Barriers to Low Tidal Volume Ventilation with Actual Practice. Annals of the American Thoracic Society. PMID 28771042 DOI: 10.1513/AnnalsATS.201612-973OC  1
2017 Puentes F, van der Star BJ, Boomkamp SD, Kipp M, Boon L, Bosca I, Raffel J, Gnanapavan S, van der Valk P, Stephenson J, Barnett SC, Baker D, Amor S. Neurofilament Light as an Immune Target for Pathogenic Antibodies. Immunology. PMID 28718500 DOI: 10.1111/Imm.12797  1
2017 Rocklin GJ, Chidyausiku TM, Goreshnik I, Ford A, Houliston S, Lemak A, Carter L, Ravichandran R, Mulligan VK, Chevalier A, Arrowsmith CH, Baker D. Global analysis of protein folding using massively parallel design, synthesis, and testing. Science (New York, N.Y.). 357: 168-175. PMID 28706065 DOI: 10.1126/Science.Aan0693  1
2017 Alvarez-Gonzalez C, Adams A, Mathews J, Turner BP, Giovannoni G, Baker D, Schmierer K. Cladribine to treat disease exacerbation after fingolimod discontinuation in progressive multiple sclerosis. Annals of Clinical and Translational Neurology. 4: 506-511. PMID 28695150 DOI: 10.1002/Acn3.410  1
2017 Schoebel S, Mi W, Stein A, Ovchinnikov S, Pavlovicz R, DiMaio F, Baker D, Chambers MG, Su H, Li D, Rapoport TA, Liao M. Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3. Nature. PMID 28682307 DOI: 10.1038/Nature23314  1
2017 Baker D, Pryce G, Visintin C, Sisay S, Bondarenko AI, Ho WSV, Jackson SJ, Williams TE, Al-Izki S, Sevastou I, Okuyama M, Graier WF, Stevenson LA, Tanner C, Ross R, et al. Big conductance calcium-activated potassium channel openers control spasticity without sedation. British Journal of Pharmacology. PMID 28677901 DOI: 10.1111/Bph.13889  1
2017 Baker DW. The Joint Commission and the Opioid Epidemic-Reply. Jama. 318: 92. PMID 28672313 DOI: 10.1001/jama.2017.6701  0.01
2017 Dubuisson N, Baker D, Thomson A, Marta M, Gnanapavan S, Turner B, Giovannoni G, Schmierer K. Disease modification in advanced MS: Focus on upper limb function. Multiple Sclerosis (Houndmills, Basingstoke, England). 1352458517717811. PMID 28669257 DOI: 10.1177/1352458517717811  1
2017 Alvis BD, King AB, Pandharipande PP, Weavind LM, Avila K, Leisy PJ, Ajmal M, McHugh M, Keegan KA, Baker DA, Walia A, Hughes CG. Creation and Execution of a Novel Anesthesia Perioperative Care Service at a Veterans Affairs Hospital. Anesthesia and Analgesia. PMID 28632542 DOI: 10.1213/ANE.0000000000001930  0.01
2017 Baker D, Herrod SS, Alvarez-Gonzalez C, Zalewski L, Albor C, Schmierer K. Both cladribine and alemtuzumab may effect MS via B-cell depletion. Neurology(R) Neuroimmunology & Neuroinflammation. 4: e360. PMID 28626781 DOI: 10.1212/Nxi.0000000000000360  1
2017 Sefia E, Pryce G, Meier UC, Giovannoni G, Baker D. Depletion of CD20 B cells fails to inhibit relapsing mouse experimental autoimmune encephalomyelitis. Multiple Sclerosis and Related Disorders. 14: 46-50. PMID 28619431 DOI: 10.1016/J.Msard.2017.03.013  1
2017 Baker D, Herrod SS, Alvarez-Gonzalez C, Giovannoni G, Schmierer K. Interpreting Lymphocyte Reconstitution Data From the Pivotal Phase 3 Trials of Alemtuzumab. Jama Neurology. PMID 28604916 DOI: 10.1001/Jamaneurol.2017.0676  1
2017 Strauch EM, Bernard SM, La D, Bohn AJ, Lee PS, Anderson CE, Nieusma T, Holstein CA, Garcia NK, Hooper KA, Ravichandran R, Nelson JW, Sheffler W, Bloom JD, Lee KK, ... Baker D, et al. Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site. Nature Biotechnology. PMID 28604661 DOI: 10.1038/Nbt.3907  0.01
2017 Baker DJ, Müllensiefen D. Perception of Leitmotives in Richard Wagner's Der Ring des Nibelungen. Frontiers in Psychology. 8: 662. PMID 28522981 DOI: 10.3389/fpsyg.2017.00662  0.01
2017 Simkovic F, Ovchinnikov S, Baker D, Rigden DJ. Applications of contact predictions to structural biology. Iucrj. 4: 291-300. PMID 28512576 DOI: 10.1107/S2052252517005115  1
2017 Anderson CE, Holstein CA, Strauch EM, Bennett S, Chevalier A, Nelson JW, Fu E, Baker D, Yager P. A Rapid Diagnostic Assay for Intact Influenza Virus Using a High Affinity Hemagglutinin Binding Protein. Analytical Chemistry. PMID 28499086 DOI: 10.1021/Acs.Analchem.7B00769  1
2017 Duprey NN, Wang XT, Thompson PD, Pleadwell JE, Raymundo LJ, Kim K, Sigman DM, Baker DM. Life and death of a sewage treatment plant recorded in a coral skeleton δ(15)N record. Marine Pollution Bulletin. PMID 28483141 DOI: 10.1016/J.Marpolbul.2017.04.023  1
2017 Kleffner R, Flatten J, Leaver-Fay A, Baker D, Siegel JB, Khatib F, Cooper S. Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta. Bioinformatics (Oxford, England). PMID 28481970 DOI: 10.1093/Bioinformatics/Btx283  1
2017 Janda CY, Dang LT, You C, Chang J, de Lau W, Zhong ZA, Yan KS, Marecic O, Siepe D, Li X, Moody JD, Williams BO, Clevers H, Piehler J, Baker D, et al. Surrogate Wnt agonists that phenocopy canonical Wnt and β-catenin signalling. Nature. PMID 28467818 DOI: 10.1038/Nature22306  1
2017 Goodall EF, Wang C, Simpson JE, Baker DJ, Drew DR, Heath PR, Saffrey MJ, Romero IA, Wharton SB. Age-associated changes in the blood brain barrier: Comparative studies in human and mouse. Neuropathology and Applied Neurobiology. PMID 28453876 DOI: 10.1111/nan.12408  1
2017 Heshiki Y, Dissanayake T, Zheng T, Kang K, Yueqiong N, Xu Z, Sarkar C, Woo PCY, Chow BKC, Baker D, Yan A, Webster CJ, Panagiotou G, Li J. Toward a Metagenomic Understanding on the Bacterial Composition and Resistome in Hong Kong Banknotes. Frontiers in Microbiology. 8: 632. PMID 28450856 DOI: 10.3389/Fmicb.2017.00632  1
2017 Baker DW, Berman S. The Journal Welcomes Three Associate Editors. Joint Commission Journal On Quality and Patient Safety. 43: 207-208. PMID 28434452 DOI: 10.1016/j.jcjq.2017.03.012  1
2017 Baumberg I, Baker D, Wołoszyn P, Andres J, Kopacki W, Krawczyk P, Gaszyński W. The timing of chest compressions and artificial ventilation: A re-appraisal. The American Journal of Emergency Medicine. PMID 28433452 DOI: 10.1016/j.ajem.2017.04.018  1
2017 Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL, ... Baker D, et al. The Rosetta all-atom energy function for macromolecular modeling and design. Journal of Chemical Theory and Computation. PMID 28430426 DOI: 10.1021/Acs.Jctc.7B00125  1
2017 Thomson A, Raciborska D, Baker D, Giovannoni G. How to start a blog. Practical Neurology. PMID 28404618 DOI: 10.1136/Practneurol-2017-001597  1
2017 Petrova N, Carassiti D, Altmann DR, Baker D, Schmierer K. Axonal loss in the multiple sclerosis spinal cord revisited. Brain Pathology (Zurich, Switzerland). PMID 28401686 DOI: 10.1111/Bpa.12516  1
2017 DuBois SG, Mody R, Naranjo A, Van Ryn C, Russ D, Oldridge D, Kreissman S, Baker DL, Parisi M, Shulkin BL, Bai H, Diskin SJ, Batra V, Maris JM, Park JR, et al. MIBG avidity correlates with clinical features, tumor biology, and outcomes in neuroblastoma: A report from the Children's Oncology Group. Pediatric Blood & Cancer. PMID 28383813 DOI: 10.1002/Pbc.26545  0.01
2017 Lecommandeur E, Baker D, Cox TM, Nicholls AW, Griffin JL. Alterations in endo-lysosomal function induce similar hepatic lipid profiles in rodent models of drug-induced phospholipidosis and Sandhoff disease. Journal of Lipid Research. PMID 28377426 DOI: 10.1194/Jlr.M073395  0.01
2017 Khan AA, Ashraf A, Baker D, Al-Omary MS, Savage L, Ekmejian A, Singh RS, Brienesse S, Majeed T, Gordon T, Drinkwater V, Collins NJ. Clozapine and incidence of myocarditis and sudden death - Long term Australian experience. International Journal of Cardiology. PMID 28343762 DOI: 10.1016/j.ijcard.2017.03.013  1
2017 Fallas JA, Ueda G, Sheffler W, Nguyen V, McNamara DE, Sankaran B, Pereira JH, Parmeggiani F, Brunette TJ, Cascio D, Yeates TR, Zwart P, Baker D. Computational design of self-assembling cyclic protein homo-oligomers. Nature Chemistry. 9: 353-360. PMID 28338692 DOI: 10.1038/nchem.2673  1
2017 Baker DW, Berman S. Continuity and Change at The Joint Commission Journal on Quality and Patient Safety. Joint Commission Journal On Quality and Patient Safety. 43: 1-2. PMID 28334579 DOI: 10.1016/j.jcjq.2016.11.002  1
2017 Giovannoni G, Cutter G, Pia-Sormani M, Belachew S, Hyde R, Koendgen H, Knappertz V, Tomic D, Leppert D, Herndon R, Wheeler-Kingshott CA, Ciccarelli O, Selwood D, di Cantogno EV, Ben-Amor AF, ... Baker D, et al. Is multiple sclerosis a length-dependent central axonopathy? The case for therapeutic lag and the asynchronous progressive MS hypotheses. Multiple Sclerosis and Related Disorders. 12: 70-78. PMID 28283111 DOI: 10.1016/J.Msard.2017.01.007  1
2017 Ganter M, Goldberg JM, Dvorin JD, Paulo JA, King JG, Tripathi AK, Paul AS, Yang J, Coppens I, Jiang RH, Elsworth B, Baker DA, Dinglasan RR, Gygi SP, Duraisingh MT. Erratum: Plasmodium falciparum CRK4 directs continuous rounds of DNA replication during schizogony. Nature Microbiology. 2: 17038. PMID 28263306 DOI: 10.1038/nmicrobiol.2017.38  1
2017 Baker DW. History of The Joint Commission's Pain Standards: Lessons for Today's Prescription Opioid Epidemic. Jama. PMID 28241189 DOI: 10.1001/jama.2017.0935  0.01
2017 Ganter M, Goldberg JM, Dvorin JD, Paulo JA, King JG, Tripathi AK, Paul AS, Yang J, Coppens I, Jiang RH, Elsworth B, Baker DA, Dinglasan RR, Gygi SP, Duraisingh MT. Plasmodium falciparum CRK4 directs continuous rounds of DNA replication during schizogony. Nature Microbiology. 2: 17017. PMID 28211852 DOI: 10.1038/Nmicrobiol.2017.17  1
2017 Jarvie HP, Johnson LT, Sharpley AN, Smith DR, Baker DB, Bruulsema TW, Confesor R. Increased Soluble Phosphorus Loads to Lake Erie: Unintended Consequences of Conservation Practices? Journal of Environmental Quality. 46: 123-132. PMID 28177409 DOI: 10.2134/jeq2016.07.0248  1
2017 Baker D, Marta M, Pryce G, Giovannoni G, Schmierer K. Memory B Cells are Major Targets for Effective Immunotherapy in Relapsing Multiple Sclerosis. Ebiomedicine. PMID 28161400 DOI: 10.1016/J.Ebiom.2017.01.042  1
2017 Goldsmith M, Aggarwal N, Ashani Y, Jubran H, Greisen PJ, Ovchinnikov S, Leader H, Baker D, Sussman JL, Goldenzweig A, Fleishman SJ, Tawfik DS. Overcoming an optimization plateau in the directed evolution of highly efficient nerve agent bioscavengers. Protein Engineering, Design & Selection : Peds. 1-13. PMID 28159998 DOI: 10.1093/Protein/Gzx003  1
2017 Jiao WB, Garcia Accinelli G, Hartwig B, Kiefer C, Baker D, Severing E, Willing EM, Piednoel M, Woetzel S, Madrid-Herrero E, Huettel B, Hümann U, Reinhard R, Koch MA, Swan D, et al. Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data. Genome Research. PMID 28159771 DOI: 10.1101/Gr.213652.116  1
2017 Ovchinnikov S, Park H, Varghese N, Huang PS, Pavlopoulos GA, Kim DE, Kamisetty H, Kyrpides NC, Baker D. Protein structure determination using metagenome sequence data. Science (New York, N.Y.). 355: 294-298. PMID 28104891 DOI: 10.1126/Science.Aah4043  1
2017 Wong MC, Duprey NN, Baker DM. New insights on the nitrogen footprint of a coastal megalopolis from coral-hosted Symbiodinium δ15N. Environmental Science & Technology. PMID 28085273 DOI: 10.1021/Acs.Est.6B03407  1
2017 Marcos E, Basanta B, Chidyausiku TM, Tang Y, Oberdorfer G, Liu G, Swapna GV, Guan R, Silva DA, Dou J, Pereira JH, Xiao R, Sankaran B, Zwart PH, Montelione GT, Baker D, et al. Principles for designing proteins with cavities formed by curved β sheets. Science (New York, N.Y.). 355: 201-206. PMID 28082595 DOI: 10.1126/Science.Aah7389  1
2017 Obexer R, Godina A, Garrabou X, Mittl PR, Baker D, Griffiths AD, Hilvert D. Emergence of a catalytic tetrad during evolution of a highly active artificial aldolase. Nature Chemistry. 9: 50-56. PMID 27995916 DOI: 10.1038/Nchem.2596  1
2017 Bick MJ, Greisen PJ, Morey KJ, Antunes MS, La D, Sankaran B, Reymond L, Johnsson K, Medford JI, Baker D. Author response: Computational design of environmental sensors for the potent opioid fentanyl Elife. DOI: 10.7554/Elife.28909.029  1
2017 Shortridge MD, Hosseinzadeh P, Pardo-Avila F, Varani G, Baker D. Solution structure of de novo macrocycle design12_ss Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb6Be7/Pdb  1
2017 Dang B, Wu H, Mulligan VK, Mravic M, Wu Y, Lemmin T, Ford A, Silva D, Baker D, DeGrado WF. De Novo Design of Novel Covalent Constrained Meso-size Peptide Scaffolds with Unique Tertiary Structures Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb5V2G/Pdb  1
2017 Lemak A, Rocklin GJ, Houliston S, Carter L, Chidyausiku TM, Baker D, Arrowsmith CH. Solution NMR structure of the de novo mini protein HEEH_rd4_0097 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb5Uyo/Pdb  1
2017 Crook ZR, Bradley P, Sevilla G, Friend D, King C, Mhyre A, Strong R, Baker D, Olson JM. Abstract 5573: A high-affinity Optide (optimized peptide) inhibitor of the Hippo pathway’s YAP-TEAD interaction Cancer Research. 77: 5573-5573. DOI: 10.1158/1538-7445.Am2017-5573  1
2017 Schmierer K, Marta M, Pryce G, Giovannoni G, Baker D. PO150 Memory b cells are key for immunotherapy in multiple sclerosis Journal of Neurology, Neurosurgery, and Psychiatry. 88. DOI: 10.1136/Jnnp-2017-Abn.179  1
2017 Schmierer K, Herrod S, Alvarez-Gonzalez C, Giovannoni G, Baker D. PO149 A new perspective on autoimmunity after alemtuzumab Journal of Neurology, Neurosurgery, and Psychiatry. 88. DOI: 10.1136/Jnnp-2017-Abn.178  1
2017 Mao Z, Alvarez-Gonzalez C, Allen-Philbey K, Mathews J, Turner BP, Gnanapavan S, Marta M, Baker D, Giovannoni G, Schmierer K. PO134 Personalised dosing of cladribine to treat multiple sclerosis Journal of Neurology, Neurosurgery, and Psychiatry. 88. DOI: 10.1136/Jnnp-2017-Abn.164  1
2017 Dubuisson N, Bauer A, Marta M, Gnanapavan S, Turner B, Baker D, Giovannoni G, Schmierer K, Thomson A. PO124 Validation of an environmentally-friendly and affordable cardboard 9-hole peg test Journal of Neurology, Neurosurgery, and Psychiatry. 88. DOI: 10.1136/Jnnp-2017-Abn.154  1
2017 Martinello M, Dore GJ, Bopage RI, Finlayson R, Baker D, Bloch M, Filep E, Skurowski J, Lin L, Lamoury F, Bartlett S, Applegate T, Hellard M, Matthews GV. O7 Moving towards HCV elimination in HIV/HCV co- infection in Australia following universal access to interferon-free therapy Journal of Virus Eradication. 3: 3. DOI: 10.1016/S2055-6640(20)30890-6  1
2017 Martinello M, Dore GJ, Bopage RI, Finlayson R, Baker D, Bloch M, Wilcox A, Filep E, Hellard M, Matthews GV. DAA treatment scale-up in HIV/HCV co-infection: characterisinga population at risk for reinfection Journal of Hepatology. 66. DOI: 10.1016/S0168-8278(17)31388-0  1
2017 Van Pattten WJ, Walder R, Adhikari A, Ravichandran R, Tinberg CE, Baker D, Perkins TT. A Computationally Designed Protein-Ligand Interaction is Mechanically Robust Biophysical Journal. 112: 455a. DOI: 10.1016/J.Bpj.2016.11.2440  0.01
2017 Rocklin GJ, Chidyausiku T, Goreshnik I, Ford A, Houliston S, Arrowsmith C, Baker D. High-Throughput Protein Design Reveals Quantitative Protein Stability Requirements Biophysical Journal. 112: 194a. DOI: 10.1016/J.Bpj.2016.11.1076  0.01
2017 Van Patten WJ, Walder R, Adhikari A, Okoniewski SR, Ravichandran R, Tinberg CE, Baker D, Perkins TT. Front Cover: Improved Free-Energy Landscape Quantification Illustrated with a Computationally Designed Protein-Ligand Interaction (ChemPhysChem 1/2018) Chemphyschem. 19: 1-1. DOI: 10.1002/Cphc.201701341  0.01
2016 Fechner U, de Graaf C, Torda AE, Güssregen S, Evers A, Matter H, Hessler G, Richmond NJ, Schmidtke P, Segler MHS, Waller MP, Pleik S, Shea JE, Levine Z, Mullen R, ... ... Baker D, et al. 11th German Conference on Chemoinformatics (GCC 2015) : Fulda, Germany. 8-10 November 2015. Journal of Cheminformatics. 8: 18. PMID 29270804 DOI: 10.1186/S13321-016-0119-5  1
2016 Bullerjahn GS, McKay RM, Davis TW, Baker DB, Boyer GL, D'Anglada LV, Doucette GJ, Ho JC, Irwin EG, Kling CL, Kudela RM, Kurmayer R, Michalak AM, Ortiz JD, Otten TG, et al. Global solutions to regional problems: Collecting global expertise to address the problem of harmful cyanobacterial blooms. A Lake Erie case study. Harmful Algae. 54: 223-238. PMID 28073479 DOI: 10.1016/J.Hal.2016.01.003  1
2016 Brown T, Goldman SN, Persell SD, Lee JY, Doan CT, Stephens Q, Baker DW, Cameron KA. Development and evaluation of a patient education video promoting pneumococcal vaccination. Patient Education and Counseling. PMID 28069322 DOI: 10.1016/j.pec.2016.12.025  1
2016 Phippen SW, Stevens CA, Vance TD, King NP, Baker D, Davies PL. Multivalent Display of Antifreeze Proteins by Fusion to Self-Assembling Protein Cages Enhances Ice-Binding Activities. Biochemistry. 55: 6811-6820. PMID 27951652 DOI: 10.1021/Acs.Biochem.6B00864  1
2016 Mills JH, Sheffler W, Ener ME, Almhjell PJ, Oberdorfer G, Pereira JH, Parmeggiani F, Sankaran B, Zwart PH, Baker D. Computational design of a homotrimeric metalloprotein with a trisbipyridyl core. Proceedings of the National Academy of Sciences of the United States of America. PMID 27940918 DOI: 10.1073/Pnas.1600188113  1
2016 Giolai M, Paajanen P, Verweij W, Percival-Alwyn L, Baker D, Witek K, Jupe F, Bryan G, Hein I, Jones JD, Clark MD. Targeted capture and sequencing of gene-sized DNA molecules. Biotechniques. 61: 315-322. PMID 27938323 DOI: 10.2144/000114484  1
2016 von Kutzleben S, Pryce G, Giovannoni G, Baker D. Depletion of CD52 positive cells inhibits the development of CNS autoimmune disease, but deletes an immune-tolerance promoting CD8 T cell population. Implications for secondary autoimmunity of alemtuzumab in multiple sclerosis. Immunology. PMID 27925187 DOI: 10.1111/Imm.12696  1
2016 Baker D, Anandhakrishnan A, Tuite-Dalton KA, Lockart-Jones H, Middleton RM, Ford DV, Crowe C, Giovannoni G. How to refer to people with disease in research outputs: The disconnection between academic practise and that preferred by people with multiple sclerosis. Multiple Sclerosis and Related Disorders. 10: 127-133. PMID 27919479 DOI: 10.1016/J.Msard.2016.09.007  1
2016 Rose JC, Huang PS, Camp ND, Ye J, Leidal AM, Goreshnik I, Trevillian BM, Dickinson MS, Cunningham-Bryant D, Debnath J, Baker D, Wolf-Yadlin A, Maly DJ. A computationally engineered RAS rheostat reveals RAS-ERK signaling dynamics. Nature Chemical Biology. PMID 27870838 DOI: 10.1038/Nchembio.2244  1
2016 Baker DC. Preface. Advances in Carbohydrate Chemistry and Biochemistry. 73: ix-x. PMID 27816109 DOI: 10.1016/S0065-2318(16)30013-0  0.01
2016 Berger S, Procko E, Margineantu D, Lee EF, Shen BW, Zelter A, Silva DA, Chawla K, Herold MJ, Garnier JM, Johnson R, MacCoss MJ, Lessene G, Davis TN, Stayton PS, ... ... Baker D, et al. Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer. Elife. 5. PMID 27805565 DOI: 10.7554/Elife.20352  1
2016 Horowitz S, Koepnick B, Martin R, Tymieniecki A, Winburn AA, Cooper S, Flatten J, Rogawski DS, Koropatkin NM, Hailu TT, Jain N, Koldewey P, Ahlstrom LS, Chapman MR, Sikkema AP, ... Baker D, et al. Corrigendum: Determining crystal structures through crowdsourcing and coursework. Nature Communications. 7: 13392. PMID 27779204 DOI: 10.1038/Ncomms13392  1
2016 Park H, Bradley P, Greisen P, Liu Y, Mulligan VK, Kim DE, Baker D, DiMaio F. Simultaneous optimization of biomolecular energy function on features from small molecules and macromolecules. Journal of Chemical Theory and Computation. PMID 27766851 DOI: 10.1021/Acs.Jctc.6B00819  1
2016 Hsia Y, Bale JB, Gonen S, Shi D, Sheffler W, Fong KK, Nattermann U, Xu C, Huang PS, Ravichandran R, Yi S, Davis TN, Gonen T, King NP, Baker D. Corrigendum: Design of a hyperstable 60-subunit protein icosahedron. Nature. PMID 27760110 DOI: 10.1038/Nature20108  1
2016 Baker DA, Perez Algorta G. The Relationship Between Online Social Networking and Depression: A Systematic Review of Quantitative Studies. Cyberpsychology, Behavior and Social Networking. PMID 27732062 DOI: 10.1089/cyber.2016.0206  0.01
2016 Mattsson N, Zetterberg H, Janelidze S, Insel PS, Andreasson U, Stomrud E, Palmqvist S, Baker D, Tan Hehir CA, Jeromin A, Hanlon D, Song L, Shaw LM, Trojanowski JQ, Weiner MW, et al. Plasma tau in Alzheimer disease. Neurology. PMID 27694257 DOI: 10.1212/Wnl.0000000000003246  1
2016 Reichen C, Hansen S, Forzani C, Honegger A, Fleishman SJ, Zhou T, Parmeggiani F, Ernst P, Madhurantakam C, Ewald C, Mittl PR, Zerbe O, Baker D, Caflisch A, Plückthun A. Computationally Designed Armadillo Repeat Proteins for Modular Peptide Recognition. Journal of Molecular Biology. PMID 27664438 DOI: 10.1016/J.Jmb.2016.09.012  1
2016 Chen J, Varga A, Selvarajah S, Jenes A, Dienes B, Sousa-Valente J, Kulik A, Veress G, Brain SD, Baker D, Urban L, Mackie K, Nagy I. Spatial Distribution of the Cannabinoid Type 1 and Capsaicin Receptors May Contribute to the Complexity of Their Crosstalk. Scientific Reports. 6: 33307. PMID 27653550 DOI: 10.1038/Srep33307  1
2016 Agahozo MC, Peferoen L, Baker D, Amor S. CD20 therapies in multiple sclerosis and experimental autoimmune encephalomyelitis - Targeting T or B cells? Multiple Sclerosis and Related Disorders. 9: 110-7. PMID 27645355 DOI: 10.1016/J.Msard.2016.07.011  1
2016 Horowitz S, Koepnick B, Martin R, Tymieniecki A, Winburn AA, Cooper S, Flatten J, Rogawski DS, Koropatkin NM, Hailu TT, Jain N, Koldewey P, Ahlstrom LS, Chapman MR, Sikkema AP, ... Baker D, et al. Determining crystal structures through crowdsourcing and coursework. Nature Communications. 7: 12549. PMID 27633552 DOI: 10.1038/Ncomms12549  1
2016 Huang PS, Boyken SE, Baker D. The coming of age of de novo protein design. Nature. 537: 320-327. PMID 27629638 DOI: 10.1038/Nature19946  1
2016 Bhardwaj G, Mulligan VK, Bahl CD, Gilmore JM, Harvey PJ, Cheneval O, Buchko GW, Pulavarti SV, Kaas Q, Eletsky A, Huang PS, Johnsen WA, Greisen PJ, Rocklin GJ, Song Y, ... ... Baker D, et al. Accurate de novo design of hyperstable constrained peptides. Nature. PMID 27626386 DOI: 10.1038/Nature19791  1
2016 McReynolds JR, Taylor A, Vranjkovic O, Ambrosius T, Derricks O, Nino B, Kurtoglu B, Wheeler RA, Baker DA, Gasser PJ, Mantsch JR. Corticosterone Potentiation of Cocaine-Induced Reinstatement of Conditioned Place Preference in Mice is Mediated by Blockade of the Organic Cation Transporter 3. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. PMID 27604564 DOI: 10.1038/Npp.2016.187  1
2016 Baker DM, Murdoch TJ, Conti-Jerpe I, Fogel M. Investigating Bermuda's pollution history through stable isotope analyses of modern and museum-held gorgonian corals. Marine Pollution Bulletin. PMID 27600272 DOI: 10.1016/J.Marpolbul.2016.08.069  1
2016 Williams SC, Morton DJ, Braun BI, Longo BA, Baker DW. Comparing Public Quality Ratings for Accredited and Nonaccredited Nursing Homes. Journal of the American Medical Directors Association. PMID 27600192 DOI: 10.1016/j.jamda.2016.07.025  1
2016 Hurley MM, Maunze B, Block ME, Frenkel MM, Reilly MJ, Kim E, Chen Y, Li Y, Baker DA, Liu QS, Choi S. Pituitary Adenylate-Cyclase Activating Polypeptide Regulates Hunger- and Palatability-Induced Binge Eating. Frontiers in Neuroscience. 10: 383. PMID 27597817 DOI: 10.3389/Fnins.2016.00383  1
2016 Wang Y, Lam W, Chen SR, Guan FL, Dutchman GE, Francis S, Baker DC, Cheng YC. Tylophorine Analog DCB-3503 Inhibited Cyclin D1 Translation through Allosteric Regulation of Heat Shock Cognate Protein 70. Scientific Reports. 6: 32832. PMID 27596272 DOI: 10.1038/srep32832  1
2016 Hwu RS, Spinella PC, Keller MS, Baker D, Wallendorf M, Leonard JC. The effect of massive transfusion protocol implementation on pediatric trauma care. Transfusion. PMID 27572499 DOI: 10.1111/trf.13781  0.01
2016 Liu B, Song S, Maldonado IR, Pingitore A, Huang GC, Baker D, Jones PM, Persaud SJ. GPR55-dependent stimulation of insulin secretion from isolated mouse and human islets of Langerhans. Diabetes, Obesity & Metabolism. PMID 27561953 DOI: 10.1111/Dom.12780  1
2016 DuPree E, Baker DW. Building the Road to High Reliability. Joint Commission Journal On Quality and Patient Safety / Joint Commission Resources. 42: 387-8. PMID 27535455  0.01
Show low-probability matches.