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Ambrish Roy, Ph.D.

Affiliations: 
2011 Biochemistry & Molecular Biology University of Kansas, Lawrence, KS, United States 
Area:
Bioinformatics Biology, Genetics
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"Ambrish Roy"
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Yan Bing Zhang grad student 2011 University of Kansas
 (Protein structure prediction and structure-based protein function annotation.)

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Publications

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Zohra Smaili F, Tian S, Roy A, et al. (2021) QAUST: Protein Function Prediction Using Structure Similarity, Protein Interaction, and Functional Motifs. Genomics, Proteomics & Bioinformatics
Roy A, Srinivasan B, Skolnick J. (2015) PoLi: A Virtual Screening Pipeline Based on Template Pocket and Ligand Similarity. Journal of Chemical Information and Modeling. 55: 1757-70
Skolnick J, Gao M, Roy A, et al. (2015) Implications of the small number of distinct ligand binding pockets in proteins for drug discovery, evolution and biochemical function. Bioorganic & Medicinal Chemistry Letters. 25: 1163-70
Yang J, Yan R, Roy A, et al. (2015) The I-TASSER Suite: protein structure and function prediction. Nature Methods. 12: 7-8
Roy A, Skolnick J. (2015) LIGSIFT: an open-source tool for ligand structural alignment and virtual screening. Bioinformatics (Oxford, England). 31: 539-44
Minie M, Chopra G, Sethi G, et al. (2014) CANDO and the infinite drug discovery frontier. Drug Discovery Today. 19: 1353-63
Yang J, Roy A, Zhang Y. (2013) Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinformatics (Oxford, England). 29: 2588-95
Yang J, Roy A, Zhang Y. (2013) BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions. Nucleic Acids Research. 41: D1096-103
Roy A, Yang J, Zhang Y. (2012) COFACTOR: an accurate comparative algorithm for structure-based protein function annotation. Nucleic Acids Research. 40: W471-7
Roy A, Zhang Y. (2012) Recognizing protein-ligand binding sites by global structural alignment and local geometry refinement. Structure (London, England : 1993). 20: 987-97
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