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Stefan Washietl

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 
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"Stefan Washietl"
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Manolis Kellis post-doc MIT

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Washietl S, Bernhart SH, Kellis M. (2014) Energy-based RNA consensus secondary structure prediction in multiple sequence alignments. Methods in Molecular Biology (Clifton, N.J.). 1097: 125-41
Washietl S, Kellis M, Garber M. (2014) Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals. Genome Research. 24: 616-28
Rouskin S, Zubradt M, Washietl S, et al. (2014) Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo. Nature. 505: 701-5
Washietl S, Will S, Hendrix DA, et al. (2012) Computational analysis of noncoding RNAs. Wiley Interdisciplinary Reviews. Rna. 3: 759-78
Washietl S, Hofacker IL, Stadler PF, et al. (2012) RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction. Nucleic Acids Research. 40: 4261-72
Parker BJ, Moltke I, Roth A, et al. (2011) New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes. Genome Research. 21: 1929-43
Lin MF, Kheradpour P, Washietl S, et al. (2011) Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes. Genome Research. 21: 1916-28
Lindblad-Toh K, Garber M, Zuk O, et al. (2011) A high-resolution map of human evolutionary constraint using 29 mammals. Nature. 478: 476-82
Washietl S, Findeiss S, Müller SA, et al. (2011) RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data. Rna (New York, N.Y.). 17: 578-94
Roy S, Ernst J, et al. (2010) Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97
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