Joseph R. Ecker, Ph.D.

HHMI-The Salk Institute for Biological Studies 
epigenetics, molecular genetics
"Joseph Ecker"


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Richard W. Hyman grad student 1978-1982 Penn State College of Medicine (Chemistry Tree)
Ronald W. Davis post-doc 1983-1986 Stanford Medical School (Evolution Tree)


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Ammar Naqvi research assistant 2006-2008 (Chemistry Tree)
José Alonso grad student
Justin Borevitz grad student
Gregg Roman grad student (Neurotree)
Anna Stepanova grad student 2001 Penn
Ramlah B. Nehring grad student 2007 UCSD
Katherine N. Chang grad student 2011 UCSD
Qian Peng grad student 2012 UCSD (Neurotree)
Joseph John Kieber post-doc
Sarah J. Liljegren post-doc
Ryan Lister post-doc HHMI-The Salk Institute for Biological Studies
Hong Qiao post-doc
Robert J. Schmitz post-doc
Mathew G. Lewsey post-doc 2010-2016 Salk Institute
Chongyuan Luo post-doc 2012-2019 Salk Institute
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Lee DS, Luo C, Zhou J, et al. (2019) Simultaneous profiling of 3D genome structure and DNA methylation in single human cells. Nature Methods
Zander M, Willige BC, He Y, et al. (2019) Epigenetic silencing of a multifunctional plant stress regulator. Elife. 8
Jupe F, Rivkin AC, Michael TP, et al. (2019) The complex architecture and epigenomic impact of plant T-DNA insertions. Plos Genetics. 15: e1007819
Luo C, Lee QY, Wapinski O, et al. (2019) Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons. Elife. 8
Hrit J, Goodrich L, Li C, et al. (2018) OGT binds a conserved C-terminal domain of TET1 to regulate TET1 activity and function in development. Elife. 7
Luo C, Hajkova P, Ecker JR. (2018) Dynamic DNA methylation: In the right place at the right time. Science (New York, N.Y.). 361: 1336-1340
Luo C, Rivkin A, Zhou J, et al. (2018) Robust single-cell DNA methylome profiling with snmC-seq2. Nature Communications. 9: 3824
Sabbagh MF, Heng JS, Luo C, et al. (2018) Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells. Elife. 7
Yazaki J, Galli M, Kim AY, et al. (2018) Profiling Interactome Networks with the HaloTag-NAPPA In Situ Protein Array. Current Protocols in Plant Biology. e20071
Michael TP, Jupe F, Bemm F, et al. (2018) High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nature Communications. 9: 541
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