Joseph R. Ecker, Ph.D.

HHMI-The Salk Institute for Biological Studies 
epigenetics, molecular genetics
"Joseph Ecker"


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Richard W. Hyman grad student 1978-1982 Penn State College of Medicine (Chemistry Tree)
Ronald W. Davis post-doc 1983-1986 Stanford Medical School (Evolution Tree)


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Ammar Naqvi research assistant 2006-2008 (Chemistry Tree)
José Alonso grad student
Justin Borevitz grad student
Gregg Roman grad student (Neurotree)
Anna Stepanova grad student 2001 Penn
Ramlah B. Nehring grad student 2007 UCSD
Katherine N. Chang grad student 2011 UCSD
Qian Peng grad student 2012 UCSD (Neurotree)
Shao-Shan Carol Huang post-doc New York University
Joseph John Kieber post-doc
Sarah J. Liljegren post-doc
Ryan Lister post-doc HHMI-The Salk Institute for Biological Studies
Hong Qiao post-doc
Robert J. Schmitz post-doc
Joseph Swift post-doc HHMI-The Salk Institute for Biological Studies
Travis Lee post-doc 2018- Salk Institute (Chemistry Tree)
Mathew G. Lewsey post-doc 2010-2016 Salk Institute
Chongyuan Luo post-doc 2012-2019 Salk Institute
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Zander M, Lewsey MG, Clark NM, et al. (2020) Integrated multi-omics framework of the plant response to jasmonic acid. Nature Plants. 6: 290-302
Lavery LA, Ure K, Wan YW, et al. (2020) Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome. Elife. 9
Burko Y, Seluzicki A, Zander M, et al. (2020) Chimeric Activators and Repressors Define HY5 Activity and Reveal a Light-Regulated Feedback Mechanism. The Plant Cell
Ortigosa A, Fonseca S, Franco-Zorrilla JM, et al. (2019) The JA-pathway MYC transcription factors regulate photomorphogenic responses by targeting HY5 gene expression. The Plant Journal : For Cell and Molecular Biology
Van Moerkercke A, Duncan O, Zander M, et al. (2019) A MYC2/MYC3/MYC4-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels. Proceedings of the National Academy of Sciences of the United States of America
Brigidi GS, Hayes MGB, Delos Santos NP, et al. (2019) Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers. Cell. 179: 373-391.e27
Lee DS, Luo C, Zhou J, et al. (2019) Simultaneous profiling of 3D genome structure and DNA methylation in single human cells. Nature Methods
Salehin M, Li B, Tang M, et al. (2019) Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels. Nature Communications. 10: 4021
Zander M, Willige BC, He Y, et al. (2019) Epigenetic silencing of a multifunctional plant stress regulator. Elife. 8
Zhou J, Ma J, Chen Y, et al. (2019) Robust single-cell Hi-C clustering by convolution- and random-walk-based imputation. Proceedings of the National Academy of Sciences of the United States of America
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