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| Michael TP, Ernst E, Hartwick N, et al. (2020) Genome and time-of-day transcriptome of link morphological minimization with gene loss and less growth control. Genome Research |
| Zander M, Willige BC, He Y, et al. (2019) Epigenetic silencing of a multifunctional plant stress regulator. Elife. 8 |
| Jupe F, Rivkin AC, Michael TP, et al. (2019) The complex architecture and epigenomic impact of plant T-DNA insertions. Plos Genetics. 15: e1007819 |
| Zander M, Willige BC, He Y, et al. (2019) Author response: Epigenetic silencing of a multifunctional plant stress regulator Elife |
| Jouet A, Saunders DGO, McMullan M, et al. (2018) Albugo candida race diversity, ploidy and host-associated microbes revealed using DNA sequence capture on diseased plants in the field. The New Phytologist |
| Michael TP, Jupe F, Bemm F, et al. (2018) High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nature Communications. 9: 541 |
| Kawakatsu T, Huang SC, Jupe F, et al. (2016) Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell. 166: 492-505 |
| Jupe F, Chen X, Verweij W, et al. (2014) Genomic DNA library preparation for resistance gene enrichment and sequencing (RenSeq) in plants. Methods in Molecular Biology (Clifton, N.J.). 1127: 291-303 |