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Hao Y, Stuart T, Kowalski MH, et al. (2023) Dictionary learning for integrative, multimodal and scalable single-cell analysis. Nature Biotechnology |
Stuart T, Hao S, Zhang B, et al. (2022) Nanobody-tethered transposition enables multifactorial chromatin profiling at single-cell resolution. Nature Biotechnology |
Luo C, Liu H, Xie F, et al. (2022) Single nucleus multi-omics identifies human cortical cell regulatory genome diversity. Cell Genomics. 2 |
Zhang B, Srivastava A, Mimitou E, et al. (2022) Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro. Nature Biotechnology |
Rungrat T, Almonte AA, Cheng R, et al. (2019) A Genome-Wide Association Study of Non-Photochemical Quenching in response to local seasonal climates in . Plant Direct. 3: e00138 |
Stuart T, Buckberry S, Lister R. (2018) Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data. Methods in Molecular Biology (Clifton, N.J.). 1767: 299-310 |
Stuart T, Eichten S, Cahn J, et al. (2016) Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation. Elife. 5 |
Eichten SR, Stuart T, Srivastava A, et al. (2016) DNA methylation profiles of diverse Brachypodium distachyon aligns with underlying genetic diversity. Genome Research |
Kawakatsu T, Stuart T, Valdes M, et al. (2016) Unique cell-type-specific patterns of DNA methylation in the root meristem. Nature Plants. 2: 16058 |