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| Buckberry S, Liu X, Poppe D, et al. (2023) Transient naive reprogramming corrects hiPS cells functionally and epigenetically. Nature. 620: 863-872 |
| Herring CA, Simmons RK, Freytag S, et al. (2022) Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution. Cell |
| de Mendoza A, Nguyen TV, Ford E, et al. (2022) Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability. Genome Biology. 23: 163 |
| Grubman A, Choo XY, Chew G, et al. (2021) Transcriptional signature in microglia associated with Aβ plaque phagocytosis. Nature Communications. 12: 3015 |
| de Mendoza A, Poppe D, Buckberry S, et al. (2021) The emergence of the brain non-CpG methylation system in vertebrates. Nature Ecology & Evolution |
| Liu X, Ouyang JF, Rossello FJ, et al. (2020) Reprogramming roadmap reveals route to human induced trophoblast stem cells. Nature |
| Grubman A, Chew G, Ouyang JF, et al. (2019) A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation. Nature Neuroscience |
| de Mendoza A, Hatleberg WL, Pang K, et al. (2019) Convergent evolution of a vertebrate-like methylome in a marine sponge. Nature Ecology & Evolution. 3: 1464-1473 |
| de Mendoza A, Bonnet A, Vargas-Landin DB, et al. (2018) Author Correction: Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nature Communications. 9: 1811 |
| de Mendoza A, Bonnet A, Vargas-Landin DB, et al. (2018) Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nature Communications. 9: 1341 |