Benjamin J. Cole, Ph.D. - Publications

Biology University of California, San Diego, La Jolla, CA 
Circadian Rhythms, Systems Biology

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Martínez-Vasallo C, Cole B, Gallego-Bartolomé J, Chory J, Kay SA, Nohales MA. Epidermal GIGANTEA adjusts the response to shade at dusk by directly impinging on PHYTOCHROME INTERACTING FACTOR 7 function. Biorxiv : the Preprint Server For Biology. PMID 36993677 DOI: 10.1101/2023.03.21.533699  0.746
2022 Gao C, Courty PE, Varoquaux N, Cole B, Montoya L, Xu L, Purdom E, Vogel J, Hutmacher RB, Dahlberg JA, Coleman-Derr D, Lemaux PG, Taylor JW. Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression. Molecular Ecology. PMID 35000239 DOI: 10.1111/mec.16343  0.336
2021 Jha SG, Borowsky AT, Cole BJ, Fahlgren N, Farmer A, Huang SC, Karia P, Libault M, Provart NJ, Rice SL, Saura-Sanchez M, Agarwal P, Ahkami AH, Anderton CR, et al. Vision, challenges and opportunities for a Plant Cell Atlas. Elife. 10. PMID 34491200 DOI: 10.7554/eLife.66877  0.311
2020 MacKinnon KJ, Cole BJ, Yu C, Coomey JH, Hartwick NT, Remigereau MS, Duffy T, Michael TP, Kay SA, Hazen SP. Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation. The New Phytologist. PMID 32112414 DOI: 10.1111/Nph.16507  0.716
2019 Varoquaux N, Cole B, Gao C, Pierroz G, Baker CR, Patel D, Madera M, Jeffers T, Hollingsworth J, Sievert J, Yoshinaga Y, Owiti JA, Singan VR, DeGraaf S, Xu L, et al. Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses. Proceedings of the National Academy of Sciences of the United States of America. PMID 31806758 DOI: 10.1073/Pnas.1907500116  0.334
2019 Shulse CN, Cole BJ, Ciobanu D, Lin J, Yoshinaga Y, Gouran M, Turco GM, Zhu Y, O'Malley RC, Brady SM, Dickel DE. High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types. Cell Reports. 27: 2241-2247.e4. PMID 31091459 DOI: 10.1016/J.Celrep.2019.04.054  0.319
2018 Sasse J, Kant J, Cole BJ, Klein AP, Arsova B, Schlaepfer P, Gao J, Lewald K, Zhalnina K, Kosina S, Bowen BP, Treen D, Vogel J, Visel A, Watt M, et al. Multi-lab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass. The New Phytologist. PMID 30585637 DOI: 10.1111/Nph.15662  0.312
2017 Cole BJ, Feltcher ME, Waters RJ, Wetmore KM, Mucyn TS, Ryan EM, Wang G, Ul-Hasan S, McDonald M, Yoshikuni Y, Malmstrom RR, Deutschbauer AM, Dangl JL, Visel A. Genome-wide identification of bacterial plant colonization genes. Plos Biology. 15: e2002860. PMID 28938018 DOI: 10.1371/Journal.Pbio.2002860  0.346
2015 Pedmale UV, Huang SC, Zander M, Cole BJ, Hetzel J, Ljung K, Reis PA, Sridevi P, Nito K, Nery JR, Ecker JR, Chory J. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. Cell. PMID 26724867 DOI: 10.1016/J.Cell.2015.12.018  0.754
2014 Matos DA, Cole BJ, Whitney IP, MacKinnon KJ, Kay SA, Hazen SP. Daily changes in temperature, not the circadian clock, regulate growth rate in Brachypodium distachyon. Plos One. 9: e100072. PMID 24927130 DOI: 10.1371/Journal.Pone.0100072  0.739
2013 Jung HS, Crisp PA, Estavillo GM, Cole B, Hong F, Mockler TC, Pogson BJ, Chory J. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proceedings of the National Academy of Sciences of the United States of America. 110: 14474-9. PMID 23918368 DOI: 10.1073/Pnas.1311632110  0.744
2012 Cole BJ, Chory J. Image-based analysis of light-grown seedling hypocotyls in Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 918: 1-7. PMID 22893281 DOI: 10.1007/978-1-61779-995-2_1  0.631
2012 Li L, Ljung K, Breton G, Schmitz RJ, Pruneda-Paz J, Cowing-Zitron C, Cole BJ, Ivans LJ, Pedmale UV, Jung HS, Ecker JR, Kay SA, Chory J. Linking photoreceptor excitation to changes in plant architecture. Genes & Development. 26: 785-90. PMID 22508725 DOI: 10.1101/Gad.187849.112  0.642
2011 Cole B, Kay SA, Chory J. Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 65: 991-1000. PMID 21288269 DOI: 10.1111/J.1365-313X.2010.04476.X  0.735
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