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Peter J. Woolf, Ph.D. - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Receptor mediated cell behavior
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Shah A, Woolf P. Python Environment for Bayesian Learning: Inferring the Structure of Bayesian Networks from Knowledge and Data. Journal of Machine Learning Research : Jmlr. 10: 159-162. PMID 20161541  0.534
2013 Simon M, Bruex A, Kainkaryam RM, Zheng X, Huang L, Woolf PJ, Schiefelbein J. Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes. The Plant Cell. 25: 3175-85. PMID 24014549 DOI: 10.1105/Tpc.113.115121  0.763
2012 Kainkaryam RM, Bruex A, Woolf PJ, Schiefelbein J. Smart pooling of mRNA samples for efficient transcript profiling. Methods in Molecular Biology (Clifton, N.J.). 876: 189-94. PMID 22576096 DOI: 10.1007/978-1-61779-809-2_15  0.77
2012 Bruex A, Kainkaryam RM, Wieckowski Y, Kang YH, Bernhardt C, Xia Y, Zheng X, Wang JY, Lee MM, Benfey P, Woolf PJ, Schiefelbein J. A gene regulatory network for root epidermis cell differentiation in Arabidopsis. Plos Genetics. 8: e1002446. PMID 22253603 DOI: 10.1371/Journal.Pgen.1002446  0.774
2012 Zhu F, Friedman MS, Luo W, Woolf P, Hankenson KD. The transcription factor osterix (SP7) regulates BMP6-induced human osteoblast differentiation. Journal of Cellular Physiology. 227: 2677-85. PMID 21898406 DOI: 10.1002/Jcp.23010  0.655
2011 Alvarez A, Woolf PJ. RegNetB: predicting relevant regulator-gene relationships in localized prostate tumor samples. Bmc Bioinformatics. 12: 243. PMID 21682879 DOI: 10.1186/1471-2105-12-243  0.629
2011 Alvarez A, Woolf PJ. Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks. Bmc Systems Biology. 5: 86. PMID 21619639 DOI: 10.1186/1752-0509-5-86  0.651
2011 Luo W, Friedman MS, Hankenson KD, Woolf PJ. Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization. Bmc Systems Biology. 5: 82. PMID 21605425 DOI: 10.1186/1752-0509-5-82  0.676
2010 Hodges AP, Woolf P, He Y. BN+1 Bayesian network expansion for identifying molecular pathway elements. Communicative & Integrative Biology. 3: 549-54. PMID 21331236 DOI: 10.4161/Cib.3.6.12845  0.721
2010 Luo W, Woolf PJ. Reconstructing transcriptional regulatory networks using three-way mutual information and Bayesian networks. Methods in Molecular Biology (Clifton, N.J.). 674: 401-18. PMID 20827604 DOI: 10.1007/978-1-60761-854-6_23  0.679
2010 Boggy GJ, Woolf PJ. A mechanistic model of PCR for accurate quantification of quantitative PCR data. Plos One. 5: e12355. PMID 20814578 DOI: 10.1371/Journal.Pone.0012355  0.728
2010 Kainkaryam RM, Bruex A, Gilbert AC, Schiefelbein J, Woolf PJ. poolMC: smart pooling of mRNA samples in microarray experiments. Bmc Bioinformatics. 11: 299. PMID 20525223 DOI: 10.1186/1471-2105-11-299  0.763
2010 Hodges AP, Dai D, Xiang Z, Woolf P, Xi C, He Y. Bayesian network expansion identifies new ROS and biofilm regulators. Plos One. 5: e9513. PMID 20209085 DOI: 10.1371/Journal.Pone.0009513  0.728
2010 Hodges AP, Woolf P, He Y. EdgeClipper: An algorithm for Bayesian consensus network refinement and its application in microarray-based pathway refinement F1000research. 1. DOI: 10.7490/F1000Research.408.1  0.687
2009 Shah A, Tenzen T, McMahon AP, Woolf PJ. Using mechanistic Bayesian networks to identify downstream targets of the sonic hedgehog pathway. Bmc Bioinformatics. 10: 433. PMID 20021670 DOI: 10.1186/1471-2105-10-433  0.638
2009 Mehta K, Hoppe AD, Kainkaryam R, Woolf PJ, Linderman JJ. A computational approach to inferring cellular protein-binding affinities from quantitative fluorescence resonance energy transfer imaging. Proteomics. 9: 5371-83. PMID 19834887 DOI: 10.1002/Pmic.200800494  0.703
2009 Luo W, Friedman MS, Shedden K, Hankenson KD, Woolf PJ. GAGE: generally applicable gene set enrichment for pathway analysis. Bmc Bioinformatics. 10: 161. PMID 19473525 DOI: 10.1186/1471-2105-10-161  0.698
2009 Kainkaryam RM, Woolf PJ. Pooling in high-throughput drug screening. Current Opinion in Drug Discovery & Development. 12: 339-50. PMID 19396735  0.734
2008 Luo W, Hankenson KD, Woolf PJ. Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information. Bmc Bioinformatics. 9: 467. PMID 18980677 DOI: 10.1186/1471-2105-9-467  0.684
2008 Kainkaryam RM, Woolf PJ. poolHiTS: a shifted transversal design based pooling strategy for high-throughput drug screening. Bmc Bioinformatics. 9: 256. PMID 18513431 DOI: 10.1186/1471-2105-9-256  0.741
2008 Kainkaryam RM, Gilbert AC, Woolf PJ. Smart pooling of mRNA samples in microarray experiments Aiche Annual Meeting, Conference Proceedings.  0.744
2007 Xiang Z, Minter RM, Bi X, Woolf PJ, He Y. miniTUBA: medical inference by network integration of temporal data using Bayesian analysis. Bioinformatics (Oxford, England). 23: 2423-32. PMID 17644819 DOI: 10.1093/Bioinformatics/Btm372  0.319
2005 Woolf PJ, Prudhomme W, Daheron L, Daley GQ, Lauffenburger DA. Bayesian analysis of signaling networks governing embryonic stem cell fate decisions. Bioinformatics (Oxford, England). 21: 741-53. PMID 15479714 DOI: 10.1093/Bioinformatics/Bti056  0.511
2004 Brinkerhoff CJ, Woolf PJ, Linderman JJ. Monte Carlo simulations of receptor dynamics: insights into cell signaling. Journal of Molecular Histology. 35: 667-77. PMID 15614622 DOI: 10.1007/S10735-004-2663-Y  0.725
2004 Woolf PJ, Linderman JJ. An algebra of dimerization and its implications for G-protein coupled receptor signaling. Journal of Theoretical Biology. 229: 157-68. PMID 15207471 DOI: 10.1016/J.Jtbi.2004.03.012  0.584
2003 Woolf PJ, Linderman JJ. Self organization of membrane proteins via dimerization. Biophysical Chemistry. 104: 217-27. PMID 12834840 DOI: 10.1016/S0301-4622(02)00369-1  0.555
2003 Woolf PJ, Linderman JJ. Untangling ligand induced activation and desensitization of G-protein-coupled receptors. Biophysical Journal. 84: 3-13. PMID 12524261 DOI: 10.1016/S0006-3495(03)74828-0  0.562
2003 Zhong H, Wade SM, Woolf PJ, Linderman JJ, Traynor JR, Neubig RR. A spatial focusing model for G protein signals. Regulator of G protein signaling (RGS) protien-mediated kinetic scaffolding. The Journal of Biological Chemistry. 278: 7278-84. PMID 12446706 DOI: 10.1074/Jbc.M208819200  0.562
2001 Woolf PJ, Kenakin TP, Linderman JJ. Uncovering biases in high throughput screens of G-protein coupled receptors. Journal of Theoretical Biology. 208: 403-18. PMID 11222046 DOI: 10.1006/Jtbi.2000.2227  0.563
2000 Woolf PJ, Wang Y. A fuzzy logic approach to analyzing gene expression data. Physiological Genomics. 3: 9-15. PMID 11015595 DOI: 10.1152/Physiolgenomics.2000.3.1.9  0.345
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