| Year |
Citation |
Score |
| 2024 |
Biggs BW, Price MN, Lai D, Escobedo J, Fortanel Y, Huang YY, Kim K, Trotter VV, Kuehl JV, Lui LM, Chakraborty R, Deutschbauer AM, Arkin AP. High-throughput protein characterization by complementation using DNA barcoded fragment libraries. Molecular Systems Biology. PMID 39375541 DOI: 10.1038/s44320-024-00068-z |
0.379 |
|
| 2024 |
Day LA, Carlson HK, Fonseca DR, Arkin AP, Price MN, Deutschbauer AM, Costa KC. High-throughput genetics enables identification of nutrient utilization and accessory energy metabolism genes in a model methanogen. Mbio. e0078124. PMID 39120137 DOI: 10.1128/mbio.00781-24 |
0.406 |
|
| 2024 |
Huang YY, Price MN, Hung A, Gal-Oz O, Tripathi S, Smith CW, Ho D, Carion H, Deutschbauer AM, Arkin AP. Barcoded overexpression screens in gut Bacteroidales identify genes with roles in carbon utilization and stress resistance. Nature Communications. 15: 6618. PMID 39103350 DOI: 10.1038/s41467-024-50124-3 |
0.43 |
|
| 2024 |
Goff JL, Szink EG, Durrence KL, Lui LM, Nielsen TN, Kuehl JV, Hunt KA, Chandonia JM, Huang J, Thorgersen MP, Poole FL, Stahl DA, Chakraborty R, Deutschbauer AM, Arkin AP, et al. Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface. Environmental Microbiome. 19: 26. PMID 38671539 DOI: 10.1186/s40793-024-00570-9 |
0.331 |
|
| 2023 |
Tripathi S, Voogdt CGP, Bassler SO, Anderson M, Huang PH, Sakenova N, Capraz T, Jain S, Koumoutsi A, Bravo AM, Trotter V, Zimmerman M, Sonnenburg JL, Buie C, Typas A, ... Deutschbauer AM, et al. Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction. Cell Reports. 43: 113517. PMID 38142397 DOI: 10.1016/j.celrep.2023.113517 |
0.348 |
|
| 2023 |
Villalobos-Escobedo JM, Mercado-Esquivias MB, Adams C, Kauffman WB, Malmstrom RR, Deutschbauer AM, Glass NL. Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites. Plos Genetics. 19: e1010909. PMID 37651474 DOI: 10.1371/journal.pgen.1010909 |
0.321 |
|
| 2023 |
Sander K, Abel AJ, Friedline S, Sharpless W, Skerker J, Deutschbauer A, Clark DS, Arkin AP. Eliminating genes for a two-component system increases PHB productivity in Cupriavidus basilensis 4G11 under PHB suppressing, nonstress conditions. Biotechnology and Bioengineering. PMID 37638652 DOI: 10.1002/bit.28532 |
0.373 |
|
| 2023 |
Trotter VV, Shatsky M, Price MN, Juba TR, Zane GM, De León KB, Majumder EL, Gui Q, Ali R, Wetmore KM, Kuehl JV, Arkin AP, Wall JD, Deutschbauer AM, Chandonia JM, et al. Large-scale genetic characterization of the model sulfate-reducing bacterium, Hildenborough. Frontiers in Microbiology. 14: 1095191. PMID 37065130 DOI: 10.3389/fmicb.2023.1095191 |
0.431 |
|
| 2023 |
Ryan D, Bornet E, Prezza G, Alampalli SV, de Carvalho TF, Felchle H, Ebbecke T, Hayward R, Deutschbauer AM, Barquist L, Westermann AJ. An integrated transcriptomics-functional genomics approach reveals a small RNA that modulates sensitivity to tetracyclines. Biorxiv : the Preprint Server For Biology. PMID 36824877 DOI: 10.1101/2023.02.16.528795 |
0.31 |
|
| 2023 |
Adler BA, Chamakura K, Carion H, Krog J, Deutschbauer AM, Young R, Mutalik VK, Arkin AP. Multicopy suppressor screens reveal convergent evolution of single-gene lysis proteins. Nature Chemical Biology. PMID 36805702 DOI: 10.1038/s41589-023-01269-7 |
0.34 |
|
| 2022 |
Schmidt M, Pearson AN, Incha MR, Thompson MG, Baidoo EEK, Kakumanu R, Mukhopadhyay A, Shih PM, Deutschbauer AM, Blank LM, Keasling JD. Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing. Applied and Environmental Microbiology. e0243021. PMID 35285712 DOI: 10.1128/aem.02430-21 |
0.345 |
|
| 2022 |
Peng M, Wang D, Lui LM, Nielsen T, Tian R, Kempher ML, Tao X, Pan C, Chakraborty R, Deutschbauer AM, Thorgersen MP, Adams MWW, Fields MW, Hazen TC, Arkin AP, et al. Genomic Features and Pervasive Negative Selection in Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer. Microbiology Spectrum. e0259121. PMID 35107332 DOI: 10.1128/spectrum.02591-21 |
0.388 |
|
| 2021 |
Georgoulis SJ, Shalvarjian KE, Helmann TC, Hamilton CD, Carlson HK, Deutschbauer AM, Lowe-Power TM. Genome-Wide Identification of Tomato Xylem Sap Fitness Factors for Three Plant-Pathogenic Species. Msystems. 6: e0122921. PMID 34726495 DOI: 10.1128/mSystems.01229-21 |
0.377 |
|
| 2021 |
Kothari A, Roux S, Zhang H, Prieto A, Soneja D, Chandonia JM, Spencer S, Wu X, Altenburg S, Fields MW, Deutschbauer AM, Arkin AP, Alm EJ, Chakraborty R, Mukhopadhyay A. Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance. Msystems. e0053721. PMID 34184913 DOI: 10.1128/mSystems.00537-21 |
0.302 |
|
| 2021 |
Eng T, Banerjee D, Lau AK, Bowden E, Herbert RA, Trinh J, Prahl JP, Deutschbauer A, Tanjore D, Mukhopadhyay A. Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor. Metabolic Engineering. PMID 33964456 DOI: 10.1016/j.ymben.2021.04.015 |
0.321 |
|
| 2021 |
Liu H, Shiver AL, Price MN, Carlson HK, Trotter VV, Chen Y, Escalante V, Ray J, Hern KE, Petzold CJ, Turnbaugh PJ, Huang KC, Arkin AP, Deutschbauer AM. Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments. Cell Reports. 34: 108789. PMID 33657378 DOI: 10.1016/j.celrep.2021.108789 |
0.37 |
|
| 2020 |
do Amaral FP, Tuleski TR, Pankievicz VCS, Melnyk RA, Arkin AP, Griffitts J, Tadra-Sfeir MZ, Maltempi de Souza E, Deutschbauer A, Monteiro RA, Stacey G. Diverse Bacterial Genes Modulate Plant Root Association by Beneficial Bacteria. Mbio. 11. PMID 33323518 DOI: 10.1128/mBio.03078-20 |
0.337 |
|
| 2020 |
Helmann TC, Deutschbauer AM, Lindow SE. Distinctiveness of genes contributing to growth of Pseudomonas syringae in diverse host plant species. Plos One. 15: e0239998. PMID 32986776 DOI: 10.1371/journal.pone.0239998 |
0.358 |
|
| 2020 |
Thompson MG, Incha MR, Pearson AN, Schmidt M, Sharpless WA, Eiben CB, Cruz-Morales P, Blake-Hedges JM, Liu Y, Adams CA, Haushalter RW, Krishna RN, Lichtner P, Blank LM, Mukhopadhyay A, ... Deutschbauer AM, et al. Functional analysis of the fatty acid and alcohol metabolism of using RB-TnSeq. Applied and Environmental Microbiology. PMID 32826213 DOI: 10.1128/Aem.01665-20 |
0.371 |
|
| 2020 |
Eng T, Herbert RA, Martinez U, Wang B, Chen JC, Brown JB, Deutschbauer AM, Bissell MJ, Mortimer JC, Mukhopadhyay A. Iron Supplementation Eliminates Antagonistic Interactions Between Root-Associated Bacteria. Frontiers in Microbiology. 11: 1742. PMID 32793173 DOI: 10.3389/Fmicb.2020.01742 |
0.339 |
|
| 2020 |
Bayon-Vicente G, Zarbo S, Deutschbauer A, Wattiez R, Leroy B. Photoheterotrophic Assimilation of Valerate and Associated Polyhydroxyalkanoate Production by Rhodospirillum rubrum. Applied and Environmental Microbiology. 86. PMID 32651203 DOI: 10.1128/Aem.00901-20 |
0.341 |
|
| 2020 |
De Meur Q, Deutschbauer A, Koch M, Bayon-Vicente G, Cabecas Segura P, Wattiez R, Leroy B. New perspectives on butyrate assimilation in Rhodospirillum rubrum S1H under photoheterotrophic conditions. Bmc Microbiology. 20: 126. PMID 32434546 DOI: 10.1186/S12866-020-01814-7 |
0.305 |
|
| 2020 |
Carlson HK, Lui LM, Price MN, Kazakov AE, Carr AV, Kuehl JV, Owens TK, Nielsen T, Arkin AP, Deutschbauer AM. Selective carbon sources influence the end products of microbial nitrate respiration. The Isme Journal. PMID 32372050 DOI: 10.1038/S41396-020-0666-7 |
0.353 |
|
| 2020 |
LaSarre B, Deutschbauer AM, Love CE, McKinlay JB. Covert cross-feeding revealed by genome-wide analysis of fitness determinants in a synthetic bacterial mutualism. Applied and Environmental Microbiology. PMID 32332139 DOI: 10.1128/Aem.00543-20 |
0.451 |
|
| 2020 |
Incha MR, Thompson MG, Blake-Hedges JM, Liu Y, Pearson AN, Schmidt M, Gin JW, Petzold CJ, Deutschbauer AM, Keasling JD. Leveraging host metabolism for bisdemethoxycurcumin production in . Metabolic Engineering Communications. 10: e00119. PMID 32280587 DOI: 10.1016/J.Mec.2019.E00119 |
0.403 |
|
| 2019 |
Kothari A, Soneja D, Tang A, Carlson HK, Deutschbauer AM, Mukhopadhyay A. Native Plasmid-Encoded Mercury Resistance Genes Are Functional and Demonstrate Natural Transformation in Environmental Bacterial Isolates. Msystems. 4. PMID 31848306 DOI: 10.1128/mSystems.00588-19 |
0.303 |
|
| 2019 |
Thompson MG, Valencia LE, Blake-Hedges JM, Cruz-Morales P, Velasquez AE, Pearson AN, Sermeno LN, Sharpless WA, Benites VT, Chen Y, Baidoo EEK, Petzold CJ, Deutschbauer AM, Keasling JD. Omics-driven identification and elimination of valerolactam catabolism in KT2440 for increased product titer. Metabolic Engineering Communications. 9: e00098. PMID 31720214 DOI: 10.1016/J.Mec.2019.E00098 |
0.339 |
|
| 2019 |
Helmann TC, Ongsarte CL, Lam J, Deutschbauer AM, Lindow SE. Genome-Wide Transposon Screen of a Mutant Reveals the Substrates of Efflux Transporters. Mbio. 10. PMID 31662463 DOI: 10.1128/Mbio.02614-19 |
0.395 |
|
| 2019 |
Helmann TC, Deutschbauer AM, Lindow SE. Genome-wide identification of genes required for fitness during colonization of the leaf surface and apoplast. Proceedings of the National Academy of Sciences of the United States of America. 116: 18900-18910. PMID 31484768 DOI: 10.1073/Pnas.1908858116 |
0.463 |
|
| 2019 |
Thompson MG, Blake-Hedges JM, Cruz-Morales P, Barajas JF, Curran SC, Eiben CB, Harris NC, Benites VT, Gin JW, Sharpless WA, Twigg FF, Skyrud W, Krishna RN, Henrique Pereira J, Baidoo EEK, ... ... Deutschbauer AM, et al. Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Lysine Metabolism. Mbio. 10. PMID 31064836 DOI: 10.1128/Mbio.02577-18 |
0.386 |
|
| 2019 |
Mutalik VK, Novichkov PS, Price MN, Owens TK, Callaghan M, Carim S, Deutschbauer AM, Arkin AP. Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria. Nature Communications. 10: 308. PMID 30659179 DOI: 10.1038/S41467-018-08177-8 |
0.497 |
|
| 2018 |
Meza Gutierrez F, Simsek D, Mizrak A, Deutschbauer A, Braberg H, Johnson J, Xu J, Shales M, Nguyen M, Tamse-Kuehn R, Palm C, Steinmetz LM, Krogan NJ, Toczyski DP. Genetic analysis reveals functions of atypical polyubiquitin chains. Elife. 7. PMID 30547882 DOI: 10.7554/Elife.42955 |
0.599 |
|
| 2018 |
Price MN, Wetmore KM, Waters RJ, Callaghan M, Ray J, Liu H, Kuehl JV, Melnyk RA, Lamson JS, Suh Y, Carlson HK, Esquivel Z, Sadeeshkumar H, Chakraborty R, Zane GM, ... ... Deutschbauer AM, et al. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature. PMID 29769716 DOI: 10.1038/S41586-018-0124-0 |
0.537 |
|
| 2018 |
Liu H, Price MN, Waters RJ, Ray J, Carlson HK, Lamson JS, Chakraborty R, Arkin AP, Deutschbauer AM. Magic Pools: Parallel Assessment of Transposon Delivery Vectors in Bacteria. Msystems. 3. PMID 29359196 DOI: 10.1128/mSystems.00143-17 |
0.317 |
|
| 2018 |
Price MN, Zane GM, Kuehl JV, Melnyk RA, Wall JD, Deutschbauer AM, Arkin AP. Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics. Plos Genetics. 14: e1007147. PMID 29324779 DOI: 10.1371/Journal.Pgen.1007147 |
0.343 |
|
| 2018 |
Liu H, Deutschbauer AM. Rapidly moving new bacteria to model-organism status. Current Opinion in Biotechnology. 51: 116-122. PMID 29316481 DOI: 10.1016/J.Copbio.2017.12.006 |
0.321 |
|
| 2018 |
De Meur Q, Deutschbauer A, Koch M, Wattiez R, Leroy B. Genetic Plasticity and Ethylmalonyl Coenzyme A Pathway during Acetate Assimilation in Rhodospirillum rubrum S1H under Photoheterotrophic Conditions. Applied and Environmental Microbiology. 84. PMID 29180364 DOI: 10.1128/Aem.02038-17 |
0.421 |
|
| 2018 |
Gutierrez FM, Simsek D, Mizrak A, Deutschbauer A, Braberg H, Johnson J, Xu J, Shales M, Nguyen M, Tamse-Kuehn R, Palm C, Steinmetz LM, Krogan NJ, Toczyski DP. Author response: Genetic analysis reveals functions of atypical polyubiquitin chains Elife. DOI: 10.7554/Elife.42955.022 |
0.535 |
|
| 2017 |
Rand JM, Pisithkul T, Clark RL, Thiede JM, Mehrer CR, Agnew DE, Campbell CE, Markley AL, Price MN, Ray J, Wetmore KM, Suh Y, Arkin AP, Deutschbauer AM, Amador-Noguez D, et al. A metabolic pathway for catabolizing levulinic acid in bacteria. Nature Microbiology. PMID 28947739 DOI: 10.1038/S41564-017-0028-Z |
0.389 |
|
| 2017 |
Cole BJ, Feltcher ME, Waters RJ, Wetmore KM, Mucyn TS, Ryan EM, Wang G, Ul-Hasan S, McDonald M, Yoshikuni Y, Malmstrom RR, Deutschbauer AM, Dangl JL, Visel A. Genome-wide identification of bacterial plant colonization genes. Plos Biology. 15: e2002860. PMID 28938018 DOI: 10.1371/Journal.Pbio.2002860 |
0.49 |
|
| 2017 |
Thorgersen MP, Lancaster WA, Ge X, Zane GM, Wetmore KM, Vaccaro BJ, Poole FL, Younkin AD, Deutschbauer AM, Arkin AP, Wall JD, Adams MWW. Mechanisms of Chromium and Uranium Toxicity in Pseudomonas stutzeri RCH2 Grown under Anaerobic Nitrate-Reducing Conditions. Frontiers in Microbiology. 8: 1529. PMID 28848534 DOI: 10.3389/Fmicb.2017.01529 |
0.386 |
|
| 2017 |
Carlson H, Deutschbauer A, Coates J. Microbial metal resistance and metabolism across dynamic landscapes: high-throughput environmental microbiology. F1000research. 6: 1026. PMID 28721211 DOI: 10.12688/F1000Research.10986.1 |
0.395 |
|
| 2017 |
Wu X, Deutschbauer AM, Kazakov AE, Wetmore KM, Cwick BA, Walker RM, Novichkov PS, Arkin AP, Chakraborty R. Draft Genome Sequences of Two Janthinobacteriumlividum Strains, Isolated from Pristine Groundwater Collected from the Oak Ridge Field Research Center. Genome Announcements. 5. PMID 28663297 DOI: 10.1128/Genomea.00582-17 |
0.35 |
|
| 2017 |
Sagawa S, Price MN, Deutschbauer AM, Arkin AP. Validating regulatory predictions from diverse bacteria with mutant fitness data. Plos One. 12: e0178258. PMID 28542589 DOI: 10.1371/Journal.Pone.0178258 |
0.404 |
|
| 2017 |
Haliburton JR, Shao W, Deutschbauer A, Arkin A, Abate AR. Genetic interaction mapping with microfluidic-based single cell sequencing. Plos One. 12: e0171302. PMID 28170417 DOI: 10.1371/Journal.Pone.0171302 |
0.352 |
|
| 2016 |
Bosak T, Schubotz F, de Santiago-Torio A, Kuehl JV, Carlson HK, Watson N, Daye M, Summons RE, Arkin AP, Deutschbauer AM. System-Wide Adaptations of Desulfovibrio alaskensis G20 to Phosphate-Limited Conditions. Plos One. 11: e0168719. PMID 28030630 DOI: 10.1371/Journal.Pone.0168719 |
0.344 |
|
| 2016 |
Price MN, Wetmore KM, Deutschbauer AM, Arkin AP. A Comparison of the Costs and Benefits of Bacterial Gene Expression. Plos One. 11: e0164314. PMID 27711251 DOI: 10.1371/Journal.Pone.0164314 |
0.363 |
|
| 2016 |
Vaccaro BJ, Lancaster WA, Thorgersen MP, Zane GM, Younkin AD, Kazakov AE, Wetmore KM, Deutschbauer A, Arkin AP, Novichkov PS, Wall JD, Adams MW. Novel Metal Cation Resistance Systems from Mutant Fitness Analysis of Denitrifying Pseudomonas stutzeri. Applied and Environmental Microbiology. PMID 27474723 DOI: 10.1128/Aem.01845-16 |
0.314 |
|
| 2016 |
Hemme CL, Green SJ, Rishishwar L, Prakash O, Pettenato A, Chakraborty R, Deutschbauer AM, Van Nostrand JD, Wu L, He Z, Jordan IK, Hazen TC, Arkin AP, Kostka JE, Zhou J. Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community. Mbio. 7. PMID 27048805 DOI: 10.1128/Mbio.02234-15 |
0.41 |
|
| 2016 |
Kosina SM, Danielewicz MA, Mohammed M, Ray J, Suh Y, Yilmaz S, Singh AK, Arkin AP, Deutschbauer AM, Northen TR. Exometabolomics Assisted Design and Validation of Synthetic Obligate Mutualism. Acs Synthetic Biology. PMID 26885935 DOI: 10.1021/Acssynbio.5B00236 |
0.382 |
|
| 2016 |
Blow MJ, Clark TA, Daum CG, Deutschbauer AM, Fomenkov A, Fries R, Froula J, Kang DD, Malmstrom RR, Morgan RD, Posfai J, Singh K, Visel A, Wetmore K, Zhao Z, et al. The Epigenomic Landscape of Prokaryotes. Plos Genetics. 12: e1005854. PMID 26870957 DOI: 10.1371/Journal.Pgen.1005854 |
0.329 |
|
| 2015 |
Rubin BE, Wetmore KM, Price MN, Diamond S, Shultzaberger RK, Lowe LC, Curtin G, Arkin AP, Deutschbauer A, Golden SS. The essential gene set of a photosynthetic organism. Proceedings of the National Academy of Sciences of the United States of America. PMID 26508635 DOI: 10.1073/Pnas.1519220112 |
0.469 |
|
| 2015 |
Vaccaro BJ, Thorgersen MP, Lancaster WA, Price MN, Wetmore KM, Poole FL, Deutschbauer A, Arkin AP, Adams MW. Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses. Applied and Environmental Microbiology. PMID 26452555 DOI: 10.1128/Aem.02602-15 |
0.4 |
|
| 2015 |
Clark IC, Youngblut M, Jacobsen G, Wetmore KM, Deutschbauer A, Lucas L, Coates JD. Genetic dissection of chlorate respiration in Pseudomonas stutzeri PDA reveals syntrophic (per)chlorate reduction. Environmental Microbiology. PMID 26411776 DOI: 10.1111/1462-2920.13068 |
0.482 |
|
| 2015 |
Ray J, Waters RJ, Skerker JM, Kuehl JV, Price MN, Huang J, Chakraborty R, Arkin AP, Deutschbauer A. Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site. Genome Announcements. 3. PMID 25977418 DOI: 10.1128/Genomea.00322-15 |
0.34 |
|
| 2015 |
Wetmore KM, Price MN, Waters RJ, Lamson JS, He J, Hoover CA, Blow MJ, Bristow J, Butland G, Arkin AP, Deutschbauer A. Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons. Mbio. 6: e00306-15. PMID 25968644 DOI: 10.1128/Mbio.00306-15 |
0.489 |
|
| 2015 |
Melnyk RA, Youngblut MD, Clark IC, Carlson HK, Wetmore KM, Price MN, Iavarone AT, Deutschbauer AM, Arkin AP, Coates JD. Novel mechanism for scavenging of hypochlorite involving a periplasmic methionine-rich Peptide and methionine sulfoxide reductase. Mbio. 6: e00233-15. PMID 25968643 DOI: 10.1128/Mbio.00233-15 |
0.353 |
|
| 2015 |
Carlson HK, Kuehl JV, Hazra AB, Justice NB, Stoeva MK, Sczesnak A, Mullan MR, Iavarone AT, Engelbrektson A, Price MN, Deutschbauer AM, Arkin AP, Coates JD. Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate. The Isme Journal. 9: 1295-305. PMID 25405978 DOI: 10.1038/Ismej.2014.216 |
0.332 |
|
| 2014 |
Price MN, Ray J, Wetmore KM, Kuehl JV, Bauer S, Deutschbauer AM, Arkin AP. The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20. Frontiers in Microbiology. 5: 577. PMID 25400629 DOI: 10.3389/Fmicb.2014.00577 |
0.322 |
|
| 2014 |
Deutschbauer A, Price MN, Wetmore KM, Tarjan DR, Xu Z, Shao W, Leon D, Arkin AP, Skerker JM. Towards an informative mutant phenotype for every bacterial gene. Journal of Bacteriology. 196: 3643-55. PMID 25112473 DOI: 10.1128/Jb.01836-14 |
0.502 |
|
| 2014 |
Shao W, Price MN, Deutschbauer AM, Romine MF, Arkin AP. Conservation of transcription start sites within genes across a bacterial genus. Mbio. 5: e01398-14. PMID 24987095 DOI: 10.1128/Mbio.01398-14 |
0.429 |
|
| 2014 |
Kuehl JV, Price MN, Ray J, Wetmore KM, Esquivel Z, Kazakov AE, Nguyen M, Kuehn R, Davis RW, Hazen TC, Arkin AP, Deutschbauer A. Functional genomics with a comprehensive library of transposon mutants for the sulfate-reducing bacterium Desulfovibrio alaskensis G20. Mbio. 5: e01041-14. PMID 24865553 DOI: 10.1128/Mbio.01041-14 |
0.64 |
|
| 2014 |
Korte HL, Fels SR, Christensen GA, Price MN, Kuehl JV, Zane GM, Deutschbauer AM, Arkin AP, Wall JD. Genetic basis for nitrate resistance in Desulfovibrio strains. Frontiers in Microbiology. 5: 153. PMID 24795702 DOI: 10.3389/Fmicb.2014.00153 |
0.387 |
|
| 2014 |
Meyer B, Kuehl JV, Price MN, Ray J, Deutschbauer AM, Arkin AP, Stahl DA. The energy-conserving electron transfer system used by Desulfovibrio alaskensis strain G20 during pyruvate fermentation involves reduction of endogenously formed fumarate and cytoplasmic and membrane-bound complexes, Hdr-Flox and Rnf. Environmental Microbiology. 16: 3463-86. PMID 24447568 DOI: 10.1111/1462-2920.12405 |
0.334 |
|
| 2014 |
Wilkening S, Lin G, Fritsch ES, Tekkedil MM, Anders S, Kuehn R, Nguyen M, Aiyar RS, Proctor M, Sakhanenko NA, Galas DJ, Gagneur J, Deutschbauer A, Steinmetz LM. An evaluation of high-throughput approaches to QTL mapping in Saccharomyces cerevisiae. Genetics. 196: 853-65. PMID 24374355 DOI: 10.1534/Genetics.113.160291 |
0.62 |
|
| 2014 |
Novichkov PS, Li X, Kuehl JV, Deutschbauer AM, Arkin AP, Price MN, Rodionov DA. Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria. Environmental Microbiology. 16: 1-8. PMID 24118949 DOI: 10.1111/1462-2920.12273 |
0.386 |
|
| 2013 |
Bendall ML, Luong K, Wetmore KM, Blow M, Korlach J, Deutschbauer A, Malmstrom RR. Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1. Journal of Bacteriology. 195: 4966-74. PMID 23995632 DOI: 10.1128/Jb.00935-13 |
0.366 |
|
| 2013 |
Meyer B, Kuehl JV, Deutschbauer AM, Arkin AP, Stahl DA. Flexibility of syntrophic enzyme systems in Desulfovibrio species ensures their adaptation capability to environmental changes. Journal of Bacteriology. 195: 4900-14. PMID 23974031 DOI: 10.1128/Jb.00504-13 |
0.41 |
|
| 2013 |
Skerker JM, Leon D, Price MN, Mar JS, Tarjan DR, Wetmore KM, Deutschbauer AM, Baumohl JK, Bauer S, Ibáñez AB, Mitchell VD, Wu CH, Hu P, Hazen T, Arkin AP. Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates. Molecular Systems Biology. 9: 674. PMID 23774757 DOI: 10.1038/Msb.2013.30 |
0.412 |
|
| 2013 |
Price MN, Deutschbauer AM, Skerker JM, Wetmore KM, Ruths T, Mar JS, Kuehl JV, Shao W, Arkin AP. Indirect and suboptimal control of gene expression is widespread in bacteria. Molecular Systems Biology. 9: 660. PMID 23591776 DOI: 10.1038/Msb.2013.16 |
0.454 |
|
| 2013 |
Brown SD, Utturkar SM, Arkin AP, Deutschbauer AM, Elias DA, Hazen TC, Chakraborty R. Draft Genome Sequence for Desulfovibrio africanus Strain PCS. Genome Announcements. 1: e0014413. PMID 23580709 DOI: 10.1128/Genomea.00144-13 |
0.346 |
|
| 2013 |
Meyer B, Kuehl J, Deutschbauer AM, Price MN, Arkin AP, Stahl DA. Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth. Journal of Bacteriology. 195: 990-1004. PMID 23264581 DOI: 10.1128/Jb.01959-12 |
0.356 |
|
| 2013 |
Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer AM, Northen TR. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. Acs Chemical Biology. 8: 189-99. PMID 23082955 DOI: 10.1021/Cb300477W |
0.505 |
|
| 2012 |
Bowen De León K, Young ML, Camilleri LB, Brown SD, Skerker JM, Deutschbauer AM, Arkin AP, Fields MW. Draft genome sequence of Pelosinus fermentans JBW45, isolated during in situ stimulation for Cr(VI) reduction. Journal of Bacteriology. 194: 5456-7. PMID 22965085 DOI: 10.1128/Jb.01224-12 |
0.321 |
|
| 2011 |
Deutschbauer A, Price MN, Wetmore KM, Shao W, Baumohl JK, Xu Z, Nguyen M, Tamse R, Davis RW, Arkin AP. Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions. Plos Genetics. 7: e1002385. PMID 22125499 DOI: 10.1371/Journal.Pgen.1002385 |
0.634 |
|
| 2011 |
Price MN, Deutschbauer AM, Kuehl JV, Liu H, Witkowska HE, Arkin AP. Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Journal of Bacteriology. 193: 5716-27. PMID 21840973 DOI: 10.1128/Jb.05563-11 |
0.392 |
|
| 2010 |
Oh J, Fung E, Schlecht U, Davis RW, Giaever G, St Onge RP, Deutschbauer A, Nislow C. Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection. Plos Pathogens. 6: e1001140. PMID 20949076 DOI: 10.1371/Journal.Ppat.1001140 |
0.731 |
|
| 2010 |
Oh J, Fung E, Price MN, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. A universal TagModule collection for parallel genetic analysis of microorganisms. Nucleic Acids Research. 38: e146. PMID 20494978 DOI: 10.1093/Nar/Gkq419 |
0.755 |
|
| 2010 |
Burns A, Joachimiak M, Deutschbauer A, Arkin A, Bender K. Identification of Small RNAs in Desulfovibrio vulgaris Hildenborough Lawrence Berkeley National Laboratory. DOI: 10.2172/985922 |
0.404 |
|
| 2010 |
Oh J, Fung E, Schlecht U, Davis RW, Giaever G, Onge RPS, Deutschbauer A, Nislow C. Representative results from complementation testing of “core” haploinsufficient strains. Plos Pathogens. DOI: 10.1371/Journal.Ppat.1001140.G004 |
0.677 |
|
| 2009 |
Tang YJ, Martin HG, Deutschbauer A, Feng X, Huang R, Llora X, Arkin A, Keasling JD. Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations. Biotechnology Progress. 25: 1254-9. PMID 19610125 DOI: 10.1002/Btpr.227 |
0.34 |
|
| 2009 |
Tang YJ, Martin HG, Dehal PS, Deutschbauer A, Llora X, Meadows A, Arkin A, Keasling JD. Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism. Biotechnology and Bioengineering. 102: 1161-9. PMID 19031428 DOI: 10.1002/Bit.22129 |
0.339 |
|
| 2007 |
McClellan AJ, Xia Y, Deutschbauer AM, Davis RW, Gerstein M, Frydman J. Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches. Cell. 131: 121-35. PMID 17923092 DOI: 10.1016/J.Cell.2007.07.036 |
0.497 |
|
| 2006 |
Deutschbauer AM, Chivian D, Arkin AP. Genomics for environmental microbiology. Current Opinion in Biotechnology. 17: 229-35. PMID 16650754 DOI: 10.1016/J.Copbio.2006.04.003 |
0.385 |
|
| 2005 |
Deutschbauer AM, Davis RW. Quantitative trait loci mapped to single-nucleotide resolution in yeast. Nature Genetics. 37: 1333-40. PMID 16273108 DOI: 10.1038/Ng1674 |
0.523 |
|
| 2005 |
Deutschbauer AM, Jaramillo DF, Proctor M, Kumm J, Hillenmeyer ME, Davis RW, Nislow C, Giaever G. Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast. Genetics. 169: 1915-25. PMID 15716499 DOI: 10.1534/Genetics.104.036871 |
0.75 |
|
| 2004 |
Petronczki M, Chwalla B, Siomos MF, Yokobayashi S, Helmhart W, Deutschbauer AM, Davis RW, Watanabe Y, Nasmyth K. Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-alpha-associated protein Ctf4 is essential for chromatid disjunction during meiosis II. Journal of Cell Science. 117: 3547-59. PMID 15226378 DOI: 10.1242/Jcs.01231 |
0.469 |
|
| 2004 |
Wiederkehr C, Basavaraj R, Sarrauste de Menthière C, Hermida L, Koch R, Schlecht U, Amon A, Brachat S, Breitenbach M, Briza P, Caburet S, Cherry M, Davis R, Deutschbauer A, Dickinson HG, et al. GermOnline, a cross-species community knowledgebase on germ cell differentiation. Nucleic Acids Research. 32: D560-7. PMID 14681481 DOI: 10.1093/Nar/Gkh055 |
0.513 |
|
| 2002 |
Steinmetz LM, Deutschbauer AM. Gene function on a genomic scale. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 782: 151-63. PMID 12458004 DOI: 10.1016/S1570-0232(02)00549-4 |
0.644 |
|
| 2002 |
Deutschbauer AM, Williams RM, Chu AM, Davis RW. Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 99: 15530-5. PMID 12432101 DOI: 10.1073/Pnas.202604399 |
0.638 |
|
| 2002 |
Giaever G, Chu AM, Ni L, Connelly C, Riles L, Véronneau S, Dow S, Lucau-Danila A, Anderson K, André B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, ... ... Deutschbauer A, et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature. 418: 387-91. PMID 12140549 DOI: 10.1038/Nature00935 |
0.78 |
|
| 2002 |
Steinmetz LM, Scharfe C, Deutschbauer AM, Mokranjac D, Herman ZS, Jones T, Chu AM, Giaever G, Prokisch H, Oefner PJ, Davis RW. Systematic screen for human disease genes in yeast. Nature Genetics. 31: 400-4. PMID 12134146 DOI: 10.1038/Ng929 |
0.732 |
|
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