| Year |
Citation |
Score |
| 2020 |
Ambrosini G, Vorontsov I, Penzar D, Groux R, Fornes O, Nikolaeva DD, Ballester B, Grau J, Grosse I, Makeev V, Kulakovskiy I, Bucher P. Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study. Genome Biology. 21: 114. PMID 32393327 DOI: 10.1186/S13059-020-01996-3 |
0.304 |
|
| 2020 |
Wiebe DS, Omelyanchuk NA, Mukhin AM, Grosse I, Lashin SA, Zemlyanskaya EV, Mironova VV. Fold-Change-Specific Enrichment Analysis (FSEA): Quantification of Transcriptional Response Magnitude for Functional Gene Groups. Genes. 11. PMID 32316383 DOI: 10.3390/Genes11040434 |
0.328 |
|
| 2020 |
Grehl C, Wagner M, Lemnian I, Glaser B, Grosse I. Performance of Mapping Approaches for Whole-Genome Bisulfite Sequencing Data in Crop Plants. Frontiers in Plant Science. 11: 176. PMID 32256504 DOI: 10.3389/Fpls.2020.00176 |
0.331 |
|
| 2020 |
Mao Y, Gabel A, Nakel T, Viehöver P, Baum T, Tekleyohans DG, Vo D, Grosse I, Groß-Hardt R. Selective egg cell polyspermy bypasses the triploid block. Elife. 9. PMID 32027307 DOI: 10.7554/Elife.52976 |
0.346 |
|
| 2019 |
Porsch M, Özdemir E, Wisniewski M, Graf S, Bull F, Hoffmann K, Ignatov A, Haybaeck J, Große I, Kalinski T, Nass N. Time resolved Gene Expression Analysis during Tamoxifen adaption of MCF-7 cells identifies long non-coding RNAs with prognostic Impact. Rna Biology. PMID 30760083 DOI: 10.1080/15476286.2019.1581597 |
0.301 |
|
| 2018 |
Kruse K, Nettling M, Wappler N, Emmer A, Kornhuber M, Staege MS, Grosse I. WebHERV: A Web Server for the Computational Investigation of Gene Expression Associated With Endogenous Retrovirus-Like Sequences. Frontiers in Microbiology. 9: 2384. PMID 30455669 DOI: 10.3389/Fmicb.2018.02384 |
0.339 |
|
| 2018 |
Theodorou P, Radzevičiūtė R, Kahnt B, Soro A, Grosse I, Paxton RJ. Genome-wide single nucleotide polymorphism scan suggests adaptation to urbanization in an important pollinator, the red-tailed bumblebee ( L.). Proceedings. Biological Sciences. 285. PMID 29669900 DOI: 10.1098/Rspb.2017.2806 |
0.307 |
|
| 2018 |
Melnyk CW, Gabel A, Hardcastle TJ, Robinson S, Miyashima S, Grosse I, Meyerowitz EM. Transcriptome dynamics atgraft junctions reveal an intertissue recognition mechanism that activates vascular regeneration. Proceedings of the National Academy of Sciences of the United States of America. PMID 29440499 DOI: 10.1073/Pnas.1718263115 |
0.515 |
|
| 2017 |
Drost HG, Gabel A, Liu J, Quint M, Grosse I. myTAI: Evolutionary Transcriptomics with R. Bioinformatics (Oxford, England). PMID 29309527 DOI: 10.1093/Bioinformatics/Btx835 |
0.715 |
|
| 2017 |
Richards CL, Alonso C, Becker C, Bossdorf O, Bucher E, Colomé-Tatché M, Durka W, Engelhardt J, Gaspar B, Gogol-Döring A, Grosse I, van Gurp TP, Heer K, Kronholm I, Lampei C, et al. Ecological plant epigenetics: Evidence from model and non-model species, and the way forward. Ecology Letters. PMID 29027325 DOI: 10.1111/Ele.12858 |
0.369 |
|
| 2017 |
Drost HG, Janitza P, Grosse I, Quint M. Cross-kingdom comparison of the developmental hourglass. Current Opinion in Genetics & Development. 45: 69-75. PMID 28347942 DOI: 10.1016/J.Gde.2017.03.003 |
0.728 |
|
| 2017 |
Doublet V, Poeschl Y, Gogol-Döring A, Alaux C, Annoscia D, Aurori C, Barribeau SM, Bedoya-Reina OC, Brown MJ, Bull JC, Flenniken ML, Galbraith DA, Genersch E, Gisder S, Grosse I, et al. Unity in defence: honeybee workers exhibit conserved molecular responses to diverse pathogens. Bmc Genomics. 18: 207. PMID 28249569 DOI: 10.1186/S12864-017-3597-6 |
0.308 |
|
| 2017 |
Nettling M, Treutler H, Cerquides J, Grosse I. Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies. Bmc Bioinformatics. 18: 141. PMID 28249564 DOI: 10.1186/S12859-017-1495-1 |
0.358 |
|
| 2017 |
Nettling M, Treutler H, Cerquides J, Grosse I. Unrealistic phylogenetic trees may improve phylogenetic footprinting. Bioinformatics (Oxford, England). PMID 28130227 DOI: 10.1093/Bioinformatics/Btx033 |
0.325 |
|
| 2016 |
Nettling M, Treutler H, Cerquides J, Grosse I. Detecting and correcting the binding-affinity bias in ChIP-seq data using inter-species information. Bmc Genomics. 17: 347. PMID 27165633 DOI: 10.1186/S12864-016-2682-6 |
0.307 |
|
| 2016 |
Drost HG, Bellstädt J, Ó'Maoiléidigh DS, Silva AT, Gabel A, Weinholdt C, Ryan PT, Dekkers BJ, Bentsink L, Hilhorst HW, Ligterink W, Wellmer F, Grosse I, Quint M. Post-embryonic hourglass patterns mark ontogenetic transitions in plant development. Molecular Biology and Evolution. PMID 26912813 DOI: 10.1093/Molbev/Msw039 |
0.723 |
|
| 2015 |
Nettling M, Treutler H, Grau J, Keilwagen J, Posch S, Grosse I. DiffLogo: a comparative visualization of sequence motifs. Bmc Bioinformatics. 16: 387. PMID 26577052 DOI: 10.1186/S12859-015-0767-X |
0.304 |
|
| 2015 |
Eggeling R, Roos T, Myllymäki P, Grosse I. Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data. Bmc Bioinformatics. 16: 375. PMID 26552868 DOI: 10.1186/S12859-015-0797-4 |
0.328 |
|
| 2015 |
Mehlgarten C, Krijger JJ, Lemnian I, Gohr A, Kasper L, Diesing AK, Grosse I, Breunig KD. Divergent Evolution of the Transcriptional Network Controlled by Snf1-Interacting Protein Sip4 in Budding Yeasts. Plos One. 10: e0139464. PMID 26440109 DOI: 10.1371/Journal.Pone.0139464 |
0.303 |
|
| 2015 |
Ryan PT, Ó'Maoiléidigh DS, Drost HG, Kwaśniewska K, Gabel A, Grosse I, Graciet E, Quint M, Wellmer F. Patterns of gene expression during Arabidopsis flower development from the time of initiation to maturation. Bmc Genomics. 16: 488. PMID 26126740 DOI: 10.1186/S12864-015-1699-6 |
0.734 |
|
| 2015 |
Moreno P, Beisken S, Harsha B, Muthukrishnan V, Tudose I, Dekker A, Dornfeldt S, Taruttis F, Grosse I, Hastings J, Neumann S, Steinbeck C. BiNChE: a web tool and library for chemical enrichment analysis based on the ChEBI ontology. Bmc Bioinformatics. 16: 56. PMID 25879798 DOI: 10.1186/S12859-015-0486-3 |
0.309 |
|
| 2015 |
Drost HG, Gabel A, Grosse I, Quint M. Evidence for active maintenance of phylotranscriptomic hourglass patterns in animal and plant embryogenesis. Molecular Biology and Evolution. 32: 1221-31. PMID 25631928 DOI: 10.1093/Molbev/Msv012 |
0.724 |
|
| 2014 |
Patra D, Fasold M, Langenberger D, Steger G, Grosse I, Stadler PF. plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants. Frontiers in Plant Science. 5: 708. PMID 25566282 DOI: 10.3389/Fpls.2014.00708 |
0.323 |
|
| 2014 |
Nettling M, Thieme N, Both A, Grosse I. DRUMS: Disk Repository with Update Management and Select option for high throughput sequencing data. Bmc Bioinformatics. 15: 38. PMID 24495746 DOI: 10.1186/1471-2105-15-38 |
0.334 |
|
| 2014 |
Eggeling R, Gohr A, Keilwagen J, Mohr M, Posch S, Smith AD, Grosse I. On the value of intra-motif dependencies of human insulator protein CTCF. Plos One. 9: e85629. PMID 24465627 DOI: 10.1371/Journal.Pone.0085629 |
0.324 |
|
| 2013 |
Poeschl Y, Delker C, Trenner J, Ullrich KK, Quint M, Grosse I. Optimized probe masking for comparative transcriptomics of closely related species. Plos One. 8: e78497. PMID 24260119 DOI: 10.1371/Journal.Pone.0078497 |
0.355 |
|
| 2013 |
Grau J, Posch S, Grosse I, Keilwagen J. A general approach for discriminative de novo motif discovery from high-throughput data. Nucleic Acids Research. 41: e197. PMID 24057214 DOI: 10.1093/Nar/Gkt831 |
0.329 |
|
| 2013 |
Dekkers BJ, Pearce S, van Bolderen-Veldkamp RP, Marshall A, Widera P, Gilbert J, Drost HG, Bassel GW, Müller K, King JR, Wood AT, Grosse I, Quint M, Krasnogor N, Leubner-Metzger G, et al. Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. Plant Physiology. 163: 205-15. PMID 23858430 DOI: 10.1104/Pp.113.223511 |
0.725 |
|
| 2013 |
Tarkka MT, Herrmann S, Wubet T, Feldhahn L, Recht S, Kurth F, Mailänder S, Bönn M, Neef M, Angay O, Bacht M, Graf M, Maboreke H, Fleischmann F, Grams TE, ... ... Grosse I, et al. OakContigDF159.1, a reference library for studying differential gene expression in Quercus robur during controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis. The New Phytologist. 199: 529-40. PMID 23672230 DOI: 10.1111/Nph.12317 |
0.357 |
|
| 2013 |
Grau J, Keilwagen J, Gohr A, Paponov IA, Posch S, Seifert M, Strickert M, Grosse I. Dispom: a discriminative de-novo motif discovery tool based on the jstacs library. Journal of Bioinformatics and Computational Biology. 11: 1340006. PMID 23427988 DOI: 10.1142/S0219720013400064 |
0.344 |
|
| 2012 |
Quint M, Drost HG, Gabel A, Ullrich KK, Bönn M, Grosse I. A transcriptomic hourglass in plant embryogenesis. Nature. 490: 98-101. PMID 22951968 DOI: 10.1038/Nature11394 |
0.73 |
|
| 2012 |
Mönke G, Seifert M, Keilwagen J, Mohr M, Grosse I, Hähnel U, Junker A, Weisshaar B, Conrad U, Bäumlein H, Altschmied L. Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon. Nucleic Acids Research. 40: 8240-54. PMID 22730287 DOI: 10.1093/Nar/Gks594 |
0.322 |
|
| 2012 |
Seifert M, Gohr A, Strickert M, Grosse I. Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana. Plos Computational Biology. 8: e1002286. PMID 22253580 DOI: 10.1371/Journal.Pcbi.1002286 |
0.363 |
|
| 2011 |
Keilwagen J, Grau J, Paponov IA, Posch S, Strickert M, Grosse I. De-novo discovery of differentially abundant transcription factor binding sites including their positional preference. Plos Computational Biology. 7: e1001070. PMID 21347314 DOI: 10.1371/Journal.Pcbi.1001070 |
0.348 |
|
| 2011 |
Graner A, Thiel T, Zhang H H, Potokina E, Prasad M, Perovic D, Kota R, Varshney R K, Scholz U, Grosse I, Stein N. Molecular Mapping in Barley: Shifting from the Structural to the Functional Level Czech Journal of Genetics and Plant Breeding. 41: 81-88. DOI: 10.17221/3665-Cjgpb |
0.34 |
|
| 2010 |
Delker C, Pöschl Y, Raschke A, Ullrich K, Ettingshausen S, Hauptmann V, Grosse I, Quint M. Natural variation of transcriptional auxin response networks in Arabidopsis thaliana. The Plant Cell. 22: 2184-200. PMID 20622145 DOI: 10.1105/Tpc.110.073957 |
0.345 |
|
| 2010 |
Keilwagen J, Grau J, Posch S, Grosse I. Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis. Bmc Bioinformatics. 11: 149. PMID 20307305 DOI: 10.1186/1471-2105-11-149 |
0.328 |
|
| 2010 |
Podobnik B, Wang D, Horvatic D, Grosse I, Stanley HE. Time-lag cross-correlations in collective phenomena Epl. 90. DOI: 10.1209/0295-5075/90/68001 |
0.453 |
|
| 2009 |
Thiel T, Graner A, Waugh R, Grosse I, Close TJ, Stein N. Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. Bmc Evolutionary Biology. 9: 209. PMID 19698139 DOI: 10.1186/1471-2148-9-209 |
0.316 |
|
| 2009 |
Seifert M, Keilwagen J, Strickert M, Grosse I. Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data. Bioinformatics (Oxford, England). 25: 2118-25. PMID 19401402 DOI: 10.1093/Bioinformatics/Btp276 |
0.322 |
|
| 2008 |
Podobnik B, Horvatic D, Pammolli F, Wang F, Stanley HE, Grosse I. Size-dependent standard deviation for growth rates: empirical results and theoretical modeling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 056102. PMID 18643131 DOI: 10.1103/Physreve.77.056102 |
0.595 |
|
| 2008 |
Schallau A, Kakhovskaya I, Tewes A, Czihal A, Tiedemann J, Mohr M, Grosse I, Manteuffel R, Bäumlein H. Phylogenetic footprints in fern spore- and seed-specific gene promoters. The Plant Journal : For Cell and Molecular Biology. 53: 414-24. PMID 18086283 DOI: 10.1111/J.1365-313X.2007.03354.X |
0.369 |
|
| 2007 |
Kuenne C, Grosse I, Matthies I, Scholz U, Sretenovic-Rajicic T, Stein N, Stephanik A, Steuernagel B, Weise S. Using Data Warehouse Technology in Crop Plant Bioinformatics Journal of Integrative Bioinformatics. 4: 145-159. DOI: 10.1515/Jib-2007-88 |
0.331 |
|
| 2007 |
Podobnik B, Shao J, Dokholyan NV, Zlatic V, Eugene Stanley H, Grosse I. Similarity and dissimilarity in correlations of genomic DNA Physica a: Statistical Mechanics and Its Applications. 373: 497-502. DOI: 10.1016/J.Physa.2006.05.041 |
0.615 |
|
| 2006 |
Grau J, Ben-Gal I, Posch S, Grosse I. VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees. Nucleic Acids Research. 34: W529-33. PMID 16845064 DOI: 10.1093/Nar/Gkl212 |
0.332 |
|
| 2006 |
Varshney RK, Grosse I, Hähnel U, Siefken R, Prasad M, Stein N, Langridge P, Altschmied L, Graner A. Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 113: 239-50. PMID 16791690 DOI: 10.1007/S00122-006-0289-Z |
0.327 |
|
| 2006 |
Podobnik B, Fu D, Jagric T, Grosse I, Stanley HE. Fractionally integrated process for transition economics Physica a: Statistical Mechanics and Its Applications. 362: 465-470. DOI: 10.1016/J.Physa.2005.09.051 |
0.579 |
|
| 2005 |
Podobnik B, Ivanov PCh, Biljakovic K, Horvatic D, Stanley HE, Grosse I. Fractionally integrated process with power-law correlations in variables and magnitudes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 026121. PMID 16196658 DOI: 10.1103/Physreve.72.026121 |
0.438 |
|
| 2005 |
Ben-Gal I, Shani A, Gohr A, Grau J, Arviv S, Shmilovici A, Posch S, Grosse I. Identification of transcription factor binding sites with variable-order Bayesian networks. Bioinformatics (Oxford, England). 21: 2657-66. PMID 15797905 DOI: 10.1093/Bioinformatics/Bti410 |
0.307 |
|
| 2005 |
Podobnik B, Ivanov PCh, Jazbinsek V, Trontelj Z, Stanley HE, Grosse I. Power-law correlated processes with asymmetric distributions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 025104. PMID 15783366 DOI: 10.1103/Physreve.71.025104 |
0.448 |
|
| 2004 |
Bauer P, Thiel T, Klatte M, Bereczky Z, Brumbarova T, Hell R, Grosse I. Analysis of sequence, map position, and gene expression reveals conserved essential genes for iron uptake in Arabidopsis and tomato. Plant Physiology. 136: 4169-83. PMID 15531708 DOI: 10.1104/Pp.104.047233 |
0.326 |
|
| 2004 |
Li W, Sun F, Grosse I. Extreme value distribution based gene selection criteria for discriminant microarray data analysis using logistic regression. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 215-26. PMID 15285889 DOI: 10.1089/1066527041410445 |
0.311 |
|
| 2004 |
Podobnik B, Ivanov PC, Grosse I, Matia K, Stanley HE. ARCH-GARCH approaches to modeling high-frequency financial data Physica a: Statistical Mechanics and Its Applications. 344: 216-220. DOI: 10.1016/J.Physa.2004.06.120 |
0.736 |
|
| 2004 |
Li W, Grosse I, Tsonis PA, Tsonis AA. Comments on "linguistic features in eukaryotic genomes" (multiple letters) Complexity. 9: 10-12. DOI: 10.1002/Cplx.20022 |
0.321 |
|
| 2002 |
Grosse I, Bernaola-Galván P, Carpena P, Román-Roldán R, Oliver J, Stanley HE. Analysis of symbolic sequences using the Jensen-Shannon divergence. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 041905. PMID 12005871 DOI: 10.1103/Physreve.65.041905 |
0.429 |
|
| 2002 |
Podobnik B, Grosse I, Stanley HE. Stochastic processes with power-law stability and a crossover in power-law correlations Physica a: Statistical Mechanics and Its Applications. 316: 153-159. DOI: 10.1016/S0378-4371(02)01023-3 |
0.439 |
|
| 2001 |
Davuluri RV, Grosse I, Zhang MQ. Computational identification of promoters and first exons in the human genome. Nature Genetics. 29: 412-7. PMID 11726928 DOI: 10.1038/Ng780 |
0.303 |
|
| 2000 |
Holste D, Weiss O, Grosse I, Herzel H. Are noncoding sequences of Rickettsia prowazekii remnants of "neutralized" genes? Journal of Molecular Evolution. 51: 353-62. PMID 11040286 DOI: 10.1007/S002390010097 |
0.325 |
|
| 2000 |
Grosse I, Herzel H, Buldyrev SV, Stanley HE. Species independence of mutual information in coding and noncoding DNA. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 61: 5624-9. PMID 11031617 DOI: 10.1103/PhysRevE.61.5624 |
0.311 |
|
| 2000 |
Holste D, Grosse I, Buldyrev SV, Stanley HE, Herzel H. Optimization of coding potentials using positional dependence of nucleotide frequencies. Journal of Theoretical Biology. 206: 525-37. PMID 11013113 DOI: 10.1006/Jtbi.2000.2144 |
0.379 |
|
| 2000 |
Bernaola-Galván P, Grosse I, Carpena P, Oliver JL, Román-Roldán R, Stanley HE. Finding borders between coding and noncoding DNA regions by an entropic segmentation method. Physical Review Letters. 85: 1342-5. PMID 10991547 DOI: 10.1103/Physrevlett.85.1342 |
0.398 |
|
| 2000 |
Grosse I, Buldyrev SV, Stanley HE, Holste D, Herzel H. Average mutual information of coding and noncoding DNA. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 614-23. PMID 10902209 DOI: 10.1142/9789814447331_0059 |
0.375 |
|
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