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Dmitri A. Nusinow, Ph.D. - Publications

Affiliations: 
2006 Donald Danforth Plant Science Center 
Area:
X chromosome inactivation
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30/53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Sorkin ML, Tzeng SC, King S, Romanowski A, Kahle N, Bindbeutel R, Hiltbrunner A, Yanovsky MJ, Evans BS, Nusinow DA. COLD REGULATED GENE 27 and 28 Antagonize the Transcriptional Activity of the RVE8/LNK1/LNK2 Circadian Complex. Plant Physiology. PMID 37017001 DOI: 10.1093/plphys/kiad210  0.378
2020 Nimmo HG, Laird J, Bindbeutel R, Nusinow DA. The evening complex is central to the difference between the circadian clocks of Arabidopsis thaliana shoots and roots. Physiologia Plantarum. PMID 32303120 DOI: 10.1111/Ppl.13108  0.37
2020 Chen WW, Takahashi N, Hirata Y, Ronald J, Porco S, Davis SJ, Nusinow DA, Kay SA, Mas P. A mobile ELF4 delivers circadian temperature information from shoots to roots. Nature Plants. PMID 32284549 DOI: 10.1038/S41477-020-0634-2  0.53
2020 Odipio J, Getu B, Chauhan RD, Alicai T, Bart R, Nusinow DA, Taylor NJ. Transgenic overexpression of endogenous FLOWERING LOCUS T-like gene MeFT1 produces early flowering in cassava. Plos One. 15: e0227199. PMID 31990916 DOI: 10.1371/Journal.Pone.0227199  0.307
2019 Huang H, McLoughlin KE, Sorkin ML, Burgie ES, Bindbeutel RK, Vierstra RD, Nusinow DA. PCH1 regulates light, temperature, and circadian signaling as a structural component of phytochrome B-photobodies in . Proceedings of the National Academy of Sciences of the United States of America. PMID 30948632 DOI: 10.1073/Pnas.1818217116  0.387
2019 Kim SC, Nusinow DA, Sorkin ML, Pruneda-Paz J, Wang X. Interaction and regulation between lipid mediator phosphatidic acid and circadian clock regulators in Arabidopsis. The Plant Cell. PMID 30674693 DOI: 10.1105/Tpc.18.00675  0.37
2018 Song YH, Kubota A, Kwon MS, Covington MF, Lee N, Taagen ER, Laboy Cintrón D, Hwang DY, Akiyama R, Hodge SK, Huang H, Nguyen NH, Nusinow DA, Millar AJ, Shimizu KK, et al. Molecular basis of flowering under natural long-day conditions in Arabidopsis. Nature Plants. PMID 30250277 DOI: 10.1038/S41477-018-0253-3  0.748
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, ... ... Nusinow DA, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.699
2017 Lee CM, Adamchek C, Feke A, Nusinow DA, Gendron JM. Mapping Protein-Protein Interactions Using Affinity Purification and Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1610: 231-249. PMID 28439867 DOI: 10.1007/978-1-4939-7003-2_15  0.687
2016 Huang H, Nusinow DA. Into the Evening: Complex Interactions in the Arabidopsis Circadian Clock. Trends in Genetics : Tig. PMID 27594171 DOI: 10.1016/J.Tig.2016.08.002  0.445
2016 Huang H, Alvarez S, Nusinow DA. Data on the identification of protein interactors with the Evening Complex and PCH1 in Arabidopsis using tandem affinity purification and mass spectrometry (TAP-MS). Data in Brief. 8: 56-60. PMID 27274533 DOI: 10.1016/J.Dib.2016.05.014  0.344
2016 Huang H, Yoo CY, Bindbeutel R, Goldsworthy J, Tielking A, Alvarez S, Naldrett MJ, Evans BS, Chen M, Nusinow DA. PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis. Elife. 5. PMID 26839287 DOI: 10.7554/Elife.13292  0.395
2016 Huang H, Alvarez S, Bindbeutel R, Shen Z, Naldrett MJ, Evans BS, Briggs SP, Hicks LM, Kay SA, Nusinow DA. Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry. Molecular & Cellular Proteomics : McP. 15: 201-17. PMID 26545401 DOI: 10.1074/Mcp.M115.054064  0.608
2015 Kaiserli E, Páldi K, O'Donnell L, Batalov O, Pedmale UV, Nusinow DA, Kay SA, Chory J. Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci. Developmental Cell. 35: 311-21. PMID 26555051 DOI: 10.1016/J.Devcel.2015.10.008  0.607
2015 Waadt R, Manalansan B, Rauniyar N, Munemasa S, Booker MA, Brandt B, Waadt C, Nusinow DA, Kay SA, Kunz HH, Schumacher K, DeLong A, Yates JR, Schroeder JI. Identification of Open Stomata1-Interacting Proteins Reveals Interactions with Sucrose Non-fermenting1-Related Protein Kinases2 and with Type 2A Protein Phosphatases That Function in Abscisic Acid Responses. Plant Physiology. 169: 760-79. PMID 26175513 DOI: 10.1104/Pp.15.00575  0.566
2012 Chow BY, Helfer A, Nusinow DA, Kay SA. ELF3 recruitment to the PRR9 promoter requires other Evening Complex members in the Arabidopsis circadian clock. Plant Signaling & Behavior. 7: 170-3. PMID 22307044 DOI: 10.4161/Psb.18766  0.62
2011 Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, Schultz TF, Farré EM, Kay SA. The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature. 475: 398-402. PMID 21753751 DOI: 10.1038/Nature10182  0.733
2011 Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA. LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Current Biology : Cb. 21: 126-33. PMID 21236673 DOI: 10.1016/J.Cub.2010.12.021  0.598
2010 Zhang EE, Liu Y, Dentin R, Pongsawakul PY, Liu AC, Hirota T, Nusinow DA, Sun X, Landais S, Kodama Y, Brenner DA, Montminy M, Kay SA. Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis. Nature Medicine. 16: 1152-6. PMID 20852621 DOI: 10.1038/Nm.2214  0.664
2008 Chang EY, Ferreira H, Somers J, Nusinow DA, Owen-Hughes T, Narlikar GJ. MacroH2A allows ATP-dependent chromatin remodeling by SWI/SNF and ACF complexes but specifically reduces recruitment of SWI/SNF. Biochemistry. 47: 13726-32. PMID 19035833 DOI: 10.1021/Bi8016944  0.409
2007 Sawa M, Nusinow DA, Kay SA, Imaizumi T. FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis. Science (New York, N.Y.). 318: 261-5. PMID 17872410 DOI: 10.1126/Science.1146994  0.748
2007 Nusinow DA, Sharp JA, Morris A, Salas S, Plath K, Panning B. The histone domain of macroH2A1 contains several dispersed elements that are each sufficient to direct enrichment on the inactive X chromosome. Journal of Molecular Biology. 371: 11-8. PMID 17570398 DOI: 10.1016/J.Jmb.2007.05.063  0.702
2007 Nusinow DA, Hernández-Muñoz I, Fazzio TG, Shah GM, Kraus WL, Panning B. Poly(ADP-ribose) polymerase 1 is inhibited by a histone H2A variant, MacroH2A, and contributes to silencing of the inactive X chromosome. The Journal of Biological Chemistry. 282: 12851-9. PMID 17322296 DOI: 10.1074/Jbc.M610502200  0.624
2006 Chu F, Nusinow DA, Chalkley RJ, Plath K, Panning B, Burlingame AL. Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 5: 194-203. PMID 16210244 DOI: 10.1074/Mcp.M500285-Mcp200  0.693
2005 de la Cruz CC, Fang J, Plath K, Worringer KA, Nusinow DA, Zhang Y, Panning B. Developmental regulation of Suz 12 localization. Chromosoma. 114: 183-92. PMID 15986205 DOI: 10.1007/S00412-005-0008-6  0.734
2005 Hernández-Muñoz I, Lund AH, van der Stoop P, Boutsma E, Muijrers I, Verhoeven E, Nusinow DA, Panning B, Marahrens Y, van Lohuizen M. Stable X chromosome inactivation involves the PRC1 Polycomb complex and requires histone MACROH2A1 and the CULLIN3/SPOP ubiquitin E3 ligase. Proceedings of the National Academy of Sciences of the United States of America. 102: 7635-40. PMID 15897469 DOI: 10.1073/Pnas.0408918102  0.653
2005 Nusinow DA, Panning B. Recognition and modification of seX chromosomes. Current Opinion in Genetics & Development. 15: 206-13. PMID 15797204 DOI: 10.1016/J.Gde.2005.02.002  0.653
2004 Chakravarthy S, Nusinow D, Plath K, Perche P, Khochbin S, Panning B, Luger K. MACRO-H2A: A STRUCTURALLY AND FUNCTIONALLY DIVERSE HISTONE VARIANT Cold Spring Harbor Symposia On Quantitative Biology. 69: 1-1. DOI: 10.1101/Sqb.2004.69.S46  0.661
2002 Plath K, Mlynarczyk-Evans S, Nusinow DA, Panning B. Xist RNA and the mechanism of X chromosome inactivation. Annual Review of Genetics. 36: 233-78. PMID 12429693 DOI: 10.1146/Annurev.Genet.36.042902.092433  0.73
2002 Choi WS, Yan M, Nusinow D, Gralla JD. In vitro transcription and start site selection in Schizosaccharomyces pombe. Journal of Molecular Biology. 319: 1005-13. PMID 12079343 DOI: 10.1016/S0022-2836(02)00329-7  0.358
Low-probability matches (unlikely to be authored by this person)
2016 Huang H, Yoo CY, Bindbeutel R, Goldsworthy J, Tielking A, Alvarez S, Naldrett MJ, Evans BS, Chen M, Nusinow DA. Author response: PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis Elife. DOI: 10.7554/Elife.13292.033  0.293
2017 Odipio J, Alicai T, Ingelbrecht I, Nusinow DA, Bart R, Taylor NJ. Efficient CRISPR/Cas9 Genome Editing of Phytoene desaturase in Cassava. Frontiers in Plant Science. 8: 1780. PMID 29093724 DOI: 10.3389/Fpls.2017.01780  0.273
2023 Kim SC, Edgeworth KN, Nusinow DA, Wang X. Circadian clock factors regulate the first condensation reaction of fatty acid synthesis in Arabidopsis. Cell Reports. 42: 113483. PMID 37995186 DOI: 10.1016/j.celrep.2023.113483  0.267
2021 Wilson ME, Tzeng SC, Augustin MM, Meyer M, Jiang X, Choi JH, Rogers JC, Evans BS, Kutchan TM, Nusinow DA. Quantitative Proteomics and Phosphoproteomics Supports a Role for Mut9-Like Kinases in Multiple Metabolic and Signaling Pathways in Arabidopsis. Molecular & Cellular Proteomics : McP. 100063. PMID 33677124 DOI: 10.1016/j.mcpro.2021.100063  0.266
2022 Sorkin ML, Nusinow DA. Using Tandem Affinity Purification to Identify Circadian Clock Protein Complexes from Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 2398: 189-203. PMID 34674177 DOI: 10.1007/978-1-0716-1912-4_15  0.266
2017 Huang H, Gehan MA, Huss SE, Alvarez S, Lizarraga C, Gruebbling EL, Gierer J, Naldrett MJ, Bindbeutel RK, Evans BS, Mockler TC, Nusinow DA. Cross-species complementation reveals conserved functions for EARLY FLOWERING 3 between monocots and dicots. Plant Direct. 1: e00018. PMID 31245666 DOI: 10.1002/pld3.18  0.263
2016 Mutka AM, Fentress SJ, Sher JW, Berry JC, Pretz C, Nusinow DA, Bart R. Quantitative, image-based phenotyping methods provide insight into spatial and temporal dimensions of plant disease. Plant Physiology. PMID 27443602 DOI: 10.1104/Pp.16.00984  0.262
2018 Khan MA, Castro-Guerrero NA, McInturf SA, Nguyen NT, Dame AN, Wang J, Bindbeutel RK, Joshi T, Jurisson SS, Nusinow DA, Mendoza-Cozatl DG. Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots. Plant, Cell & Environment. PMID 29520929 DOI: 10.1111/Pce.13192  0.254
2024 Kim SC, Nusinow DA, Wang X. Identification of Arabidopsis phospholipase Ds involved in circadian clock alterations using CRISPR/Cas9-based multiplex editing. Biorxiv : the Preprint Server For Biology. PMID 38260301 DOI: 10.1101/2024.01.09.574824  0.25
2018 Tovar JC, Hoyer JS, Lin A, Tielking A, Callen ST, Elizabeth Castillo S, Miller M, Tessman M, Fahlgren N, Carrington JC, Nusinow DA, Gehan MA. Raspberry Pi-powered imaging for plant phenotyping. Applications in Plant Sciences. 6: e1031. PMID 29732261 DOI: 10.1002/Aps3.1031  0.223
2021 Pardi SA, Nusinow DA. Out of the Dark and Into the Light: A New View of Phytochrome Photobodies. Frontiers in Plant Science. 12: 732947. PMID 34531891 DOI: 10.3389/fpls.2021.732947  0.217
2016 Huang H, Nusinow D. Tandem Purification of His6-3x FLAG Tagged Proteins for Mass Spectrometry from Arabidopsis Bio-Protocol. 6. DOI: 10.21769/bioprotoc.2060  0.193
2021 Sorkin ML, Nusinow DA. Time Will Tell: Intercellular Communication in the Plant Clock. Trends in Plant Science. PMID 33468432 DOI: 10.1016/j.tplants.2020.12.009  0.193
2022 Steiner PJ, Swift SD, Bedewitz M, Wheeldon I, Cutler SR, Nusinow DA, Whitehead TA. A Closed Form Model for Molecular Ratchet-Type Chemically Induced Dimerization Modules. Biochemistry. PMID 35675717 DOI: 10.1021/acs.biochem.2c00172  0.187
2020 Mamidi S, Healey A, Huang P, Grimwood J, Jenkins J, Barry K, Sreedasyam A, Shu S, Lovell JT, Feldman M, Wu J, Yu Y, Chen C, Johnson J, Sakakibara H, ... ... Nusinow DA, et al. A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nature Biotechnology. 38: 1203-1210. PMID 33020633 DOI: 10.1038/s41587-020-0681-2  0.183
2022 Beltrán J, Steiner PJ, Bedewitz M, Wei S, Peterson FC, Li Z, Hughes BE, Hartley Z, Robertson NR, Medina-Cucurella AV, Baumer ZT, Leonard AC, Park SY, Volkman BF, Nusinow DA, et al. Rapid biosensor development using plant hormone receptors as reprogrammable scaffolds. Nature Biotechnology. PMID 35726092 DOI: 10.1038/s41587-022-01364-5  0.179
2023 Gao M, Lu Y, Geng F, Klose C, Staudt AM, Huang H, Nguyen D, Lan H, Lu H, Mockler TC, Nusinow DA, Hiltbrunner A, Schäfer E, Wigge PA, Jaeger KE. Phytochromes transmit photoperiod information via the evening complex in Brachypodium. Genome Biology. 24: 256. PMID 37936225 DOI: 10.1186/s13059-023-03082-w  0.17
2023 Park SY, Qiu J, Wei S, Peterson FC, Beltrán J, Medina-Cucurella AV, Vaidya AS, Xing Z, Volkman BF, Nusinow DA, Whitehead TA, Wheeldon I, Cutler SR. An orthogonalized PYR1-based CID module with reprogrammable ligand-binding specificity. Nature Chemical Biology. PMID 37872402 DOI: 10.1038/s41589-023-01447-7  0.169
2021 Anderson CM, Mattoon EM, Zhang N, Becker E, McHargue W, Yang J, Patel D, Dautermann O, McAdam SAM, Tarin T, Pathak S, Avenson TJ, Berry J, Braud M, Niyogi KK, ... ... Nusinow DA, et al. High light and temperature reduce photosynthetic efficiency through different mechanisms in the C model Setaria viridis. Communications Biology. 4: 1092. PMID 34531541 DOI: 10.1038/s42003-021-02576-2  0.139
2016 Huang H, Alvarez S, Nusinow DA. Data on the identification of protein interactors with the Evening Complex and PCH1 in Arabidopsis using tandem affinity purification and mass spectrometry (TAP-MS) Data in Brief. 8: 56-60. DOI: 10.1016/j.dib.2016.05.014  0.13
2022 Zhang N, Pazouki L, Nguyen H, Jacobshagen S, Bigge BM, Xia M, Mattoon EM, Klebanovych A, Sorkin M, Nusinow DA, Avasthi P, Czymmek KJ, Zhang R. Comparative Phenotyping of Two Commonly Used Background Strains: CC-1690 (21gr) and CC-5325 (The CLiP Mutant Library Background). Plants (Basel, Switzerland). 11. PMID 35270055 DOI: 10.3390/plants11050585  0.123
2023 Sorkin ML, Markham KK, Zorich S, Menon A, Edgeworth KN, Ricono A, Bryant D, Bart R, Nusinow DA, Greenham K. Assembly and operation of an imaging system for long-term monitoring of bioluminescent and fluorescent reporters in plants. Plant Methods. 19: 19. PMID 36859301 DOI: 10.1186/s13007-023-00997-0  0.111
2021 Griffiths M, Delory BM, Jawahir V, Wong KM, Cody Bagnall G, Dowd TG, Nusinow DA, Miller AJ, Topp CN. Optimization of root traits to provide enhanced ecosystem services in agricultural systems: a focus on cover crops. Plant, Cell & Environment. PMID 34914117 DOI: 10.1111/pce.14247  0.082
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