| Year |
Citation |
Score |
| 2020 |
Jockusch S, Tao C, Li X, Anderson TK, Chien M, Kumar S, Russo JJ, Kirchdoerfer RN, Ju J. A Library of Nucleotide Analogues Terminate RNA Synthesis Catalyzed by Polymerases of Coronaviruses that Cause SARS and COVID-19. Antiviral Research. 104857. PMID 32562705 DOI: 10.1016/J.Antiviral.2020.104857 |
0.347 |
|
| 2018 |
Li X, Erturk E, Chen X, Kumar S, Guo C, Jockusch S, Russo JJ, Bestor TH, Ju J. Photochemical conversion of a cytidine derivative to a thymidine analog via [2+2]-cycloaddition. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. PMID 29926889 DOI: 10.1039/C8Pp00161H |
0.486 |
|
| 2016 |
Stranges PB, Palla M, Kalachikov S, Nivala J, Dorwart M, Trans A, Kumar S, Porel M, Chien M, Tao C, Morozova I, Li Z, Shi S, Aberra A, Arnold C, ... ... Ju J, et al. Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array. Proceedings of the National Academy of Sciences of the United States of America. 113: E6749-E6756. PMID 27729524 DOI: 10.1073/Pnas.1608271113 |
0.569 |
|
| 2016 |
Fuller CW, Kumar S, Porel M, Chien M, Bibillo A, Stranges PB, Dorwart M, Tao C, Li Z, Guo W, Shi S, Korenblum D, Trans A, Aguirre A, Liu E, ... ... Ju J, et al. Real-time single-molecule electronic DNA sequencing by synthesis using polymer-tagged nucleotides on a nanopore array. Proceedings of the National Academy of Sciences of the United States of America. 113: 5233-8. PMID 27091962 DOI: 10.1073/Pnas.1601782113 |
0.746 |
|
| 2016 |
Forstater J, Ettedgui J, Chen M, Kumar S, Kalachikov S, Russo J, Ju J, Kasianowicz J. Critical Test of Nanopore-Based Sequencing-by-Synthesis: Capture of Nucleic Acid Tags Biophysical Journal. 110: 334a. DOI: 10.1016/J.Bpj.2015.11.1795 |
0.774 |
|
| 2015 |
Palla M, Bosco FG, Yang J, Rindzevicius T, Alstrom TS, Schmidt MS, Lin Q, Ju J, Boisen A. Mathematical Model for Biomolecular Quantification Using Large-Area Surface-Enhanced Raman Spectroscopy Mapping. Rsc Advances. 5: 85845-85853. PMID 27148445 DOI: 10.1039/C5Ra16108H |
0.301 |
|
| 2014 |
Zhu J, Qiu C, Palla M, Nguyen T, Russo JJ, Ju J, Lin Q. A Microfluidic Device for Multiplex Single-Nucleotide Polymorphism Genotyping. Rsc Advances. 4: 4269-4277. PMID 26594354 DOI: 10.1039/C3Ra44091E |
0.306 |
|
| 2014 |
Palla M, Guo W, Shi S, Li Z, Wu J, Jockusch S, Guo C, Russo JJ, Turro NJ, Ju J. DNA sequencing by synthesis using 3'-O-azidomethyl nucleotide reversible terminators and surface-enhanced Raman spectroscopic detection. Rsc Advances. 4: 49342-49346. PMID 25396047 DOI: 10.1039/C4Ra08398A |
0.562 |
|
| 2013 |
Zhu J, Palla M, Ronca S, Warpner R, Ju J, Lin Q. A MEMS-Based Approach to Single Nucleotide Polymorphism Genotyping. Sensors and Actuators. a, Physical. 195: 175-182. PMID 24729659 DOI: 10.1016/J.Sna.2012.07.025 |
0.337 |
|
| 2012 |
Kumar S, Tao C, Chien M, Hellner B, Balijepalli A, Robertson JW, Li Z, Russo JJ, Reiner JE, Kasianowicz JJ, Ju J. PEG-labeled nucleotides and nanopore detection for single molecule DNA sequencing by synthesis. Scientific Reports. 2: 684. PMID 23002425 DOI: 10.1038/Srep00684 |
0.74 |
|
| 2012 |
Qiu C, Kumar S, Guo J, Lu J, Shi S, Kalachikov SM, Russo JJ, Naini AB, Schon EA, Ju J. Mitochondrial single nucleotide polymorphism genotyping by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using cleavable biotinylated dideoxynucleotides Analytical Biochemistry. 427: 202-210. PMID 22579594 DOI: 10.1016/J.Ab.2012.05.001 |
0.392 |
|
| 2012 |
Qiu C, Kumar S, Guo J, Yu L, Guo W, Shi S, Russo JJ, Ju J. Design and synthesis of cleavable biotinylated dideoxynucleotides for DNA sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Analytical Biochemistry. 427: 193-201. PMID 22543091 DOI: 10.1016/J.Ab.2012.04.021 |
0.542 |
|
| 2012 |
Guo J, Ju J, Turro NJ. Fluorescent hybridization probes for nucleic acid detection. Analytical and Bioanalytical Chemistry. 402: 3115-25. PMID 22086400 DOI: 10.1007/S00216-011-5526-X |
0.453 |
|
| 2012 |
Peng Y, Qiu C, Jockusch S, Scott AM, Li Z, Turro NJ, Ju J. CdSe/ZnS core shell quantum dot-based FRET binary oligonucleotide probes for detection of nucleic acids. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 11: 881-4. PMID 21874193 DOI: 10.1039/C1Pp05132F |
0.527 |
|
| 2011 |
Slatko BE, Kieleczawa J, Ju J, Gardner AF, Hendrickson CL, Ausubel FM. "First generation" automated DNA sequencing technology. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit7.2. PMID 21987057 DOI: 10.1002/0471142727.Mb0702S96 |
0.485 |
|
| 2011 |
Ke S, Shang S, Kalachikov SM, Morozova I, Yu L, Russo JJ, Ju J, Chasin LA. Quantitative evaluation of all hexamers as exonic splicing elements. Genome Research. 21: 1360-74. PMID 21659425 DOI: 10.1101/Gr.119628.110 |
0.34 |
|
| 2010 |
Guo J, Yu L, Turro NJ, Ju J. An integrated system for DNA sequencing by synthesis using novel nucleotide analogues. Accounts of Chemical Research. 43: 551-63. PMID 20121268 DOI: 10.1021/Ar900255C |
0.615 |
|
| 2008 |
Chen L, Rengifo HR, Grigoras C, Li X, Li Z, Ju J, Koberstein JT. Spin-on end-functional diblock copolymers for quantitative DNA immobilization. Biomacromolecules. 9: 2345-52. PMID 18680342 DOI: 10.1021/Bm800258G |
0.417 |
|
| 2008 |
Guo J, Xu N, Li Z, Zhang S, Wu J, Kim DH, Sano Marma M, Meng Q, Cao H, Li X, Shi S, Yu L, Kalachikov S, Russo JJ, Turro NJ, ... Ju J, et al. Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides. Proceedings of the National Academy of Sciences of the United States of America. 105: 9145-50. PMID 18591653 DOI: 10.1073/Pnas.0804023105 |
0.617 |
|
| 2008 |
Rengifo HR, Chen L, Grigoras C, Ju J, Koberstein JT. "Click-functional" block copolymers provide precise surface functionality via spin coating. Langmuir : the Acs Journal of Surfaces and Colloids. 24: 7450-6. PMID 18558782 DOI: 10.1021/La800038J |
0.304 |
|
| 2007 |
Martí AA, Li X, Jockusch S, Stevens N, Li Z, Raveendra B, Kalachikov S, Morozova I, Russo JJ, Akins DL, Ju J, Turro NJ. Design and characterization of two-dye and three-dye binary fluorescent probes for mRNA detection. Tetrahedron. 63: 3591-3600. PMID 19907676 DOI: 10.1016/J.Tet.2006.08.109 |
0.418 |
|
| 2007 |
Wu J, Zhang S, Meng Q, Cao H, Li Z, Li X, Shi S, Kim DH, Bi L, Turro NJ, Ju J. 3'-O-modified nucleotides as reversible terminators for pyrosequencing. Proceedings of the National Academy of Sciences of the United States of America. 104: 16462-7. PMID 17923668 DOI: 10.1073/Pnas.0707495104 |
0.57 |
|
| 2007 |
Martí AA, Puckett CA, Dyer J, Stevens N, Jockusch S, Ju J, Barton JK, Turro NJ. Inorganic-organic hybrid luminescent binary probe for DNA detection based on spin-forbidden resonance energy transfer. Journal of the American Chemical Society. 129: 8680-1. PMID 17592843 DOI: 10.1021/Ja0717257 |
0.446 |
|
| 2007 |
Martí AA, Jockusch S, Stevens N, Ju J, Turro NJ. Fluorescent hybridization probes for sensitive and selective DNA and RNA detection. Accounts of Chemical Research. 40: 402-9. PMID 17458926 DOI: 10.1021/Ar600013Q |
0.465 |
|
| 2007 |
Edwards JR, Kim DH, Ju J. Chapter 6 An Integrated System for DNA Sequencing by Synthesis Perspectives in Bioanalysis. 2: 187-205. DOI: 10.1016/S1871-0069(06)02006-4 |
0.525 |
|
| 2006 |
Ju J, Kim DH, Bi L, Meng Q, Bai X, Li Z, Li X, Marma MS, Shi S, Wu J, Edwards JR, Romu A, Turro NJ. Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators. Proceedings of the National Academy of Sciences of the United States of America. 103: 19635-40. PMID 17170132 DOI: 10.1073/pnas.0609513103 |
0.815 |
|
| 2006 |
Li X, Li Z, Martí AA, Jockusch S, Stevens N, Akins DL, Turro NJ, Ju J. Combinatorial fluorescence energy transfer molecular beacons for probing nucleic acid sequences. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 5: 896-902. PMID 17019467 DOI: 10.1039/B605936H |
0.457 |
|
| 2006 |
Tong AK, Ju J. Multiplex single-nucleotide polymorphism detection by combinatorial fluorescence energy transfer tags and molecular affinity. Methods in Molecular Biology (Clifton, N.J.). 335: 201-14. PMID 16785630 DOI: 10.1385/1-59745-069-3:201 |
0.432 |
|
| 2006 |
Martí AA, Li X, Jockusch S, Li Z, Raveendra B, Kalachikov S, Russo JJ, Morozova I, Puthanveettil SV, Ju J, Turro NJ. Pyrene binary probes for unambiguous detection of mRNA using time-resolved fluorescence spectroscopy. Nucleic Acids Research. 34: 3161-8. PMID 16769776 DOI: 10.1093/Nar/Gkl406 |
0.392 |
|
| 2006 |
Jockusch S, Martí AA, Turro NJ, Li Z, Li X, Ju J, Stevens N, Akins DL. Spectroscopic investigation of a FRET molecular beacon containing two fluorophores for probing DNA/RNA sequences. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 5: 493-8. PMID 16685327 DOI: 10.1039/B600213G |
0.535 |
|
| 2006 |
Meng Q, Kim DH, Bai X, Bi L, Turro NJ, Ju J. Design and synthesis of a photocleavable fluorescent nucleotide 3'-O-allyl-dGTP-PC-Bodipy-FL-510 as a reversible terminator for DNA sequencing by synthesis. The Journal of Organic Chemistry. 71: 3248-52. PMID 16599623 DOI: 10.1021/Jo060300K |
0.609 |
|
| 2006 |
Martí AA, Jockusch S, Li Z, Ju J, Turro NJ. Molecular beacons with intrinsically fluorescent nucleotides. Nucleic Acids Research. 34: e50. PMID 16595796 DOI: 10.1093/Nar/Gkl134 |
0.452 |
|
| 2006 |
Bi L, Kim DH, Ju J. Design and synthesis of a chemically cleavable fluorescent nucleotide, 3'-O-allyl-dGTP-allyl-bodipy-FL-510, as a reversible terminator for DNA sequencing by synthesis. Journal of the American Chemical Society. 128: 2542-3. PMID 16492031 DOI: 10.1021/Ja057136N |
0.539 |
|
| 2006 |
Rollins RA, Haghighi F, Edwards JR, Das R, Zhang MQ, Ju J, Bestor TH. Large-scale structure of genomic methylation patterns. Genome Research. 16: 157-63. PMID 16365381 DOI: 10.1101/Gr.4362006 |
0.336 |
|
| 2005 |
Bai X, Edwards J, Ju J. Molecular engineering approaches for DNA sequencing and analysis. Expert Review of Molecular Diagnostics. 5: 797-808. PMID 16149881 DOI: 10.1586/14737159.5.5.797 |
0.513 |
|
| 2005 |
Ruparel H, Bi L, Li Z, Bai X, Kim DH, Turro NJ, Ju J. Design and synthesis of a 3'-O-allyl photocleavable fluorescent nucleotide as a reversible terminator for DNA sequencing by synthesis. Proceedings of the National Academy of Sciences of the United States of America. 102: 5932-7. PMID 15829589 DOI: 10.1073/Pnas.0501962102 |
0.579 |
|
| 2005 |
Seo TS, Bai X, Kim DH, Meng Q, Shi S, Ruparel H, Li Z, Turro NJ, Ju J. Four-color DNA sequencing by synthesis on a chip using photocleavable fluorescent nucleotides. Proceedings of the National Academy of Sciences of the United States of America. 102: 5926-31. PMID 15829588 DOI: 10.1073/Pnas.0501965102 |
0.806 |
|
| 2005 |
Edwards JR, Ruparel H, Ju J. Mass-spectrometry DNA sequencing. Mutation Research. 573: 3-12. PMID 15829234 DOI: 10.1016/J.Mrfmmm.2004.07.021 |
0.504 |
|
| 2005 |
Jockusch S, Li Z, Ju J, Turro NJ. Two-photon excitation induced fluorescence of a trifluorophore-labeled DNA. Photochemistry and Photobiology. 81: 238-41. PMID 15656709 DOI: 10.1562/2004-09-27-Ra-329.1 |
0.452 |
|
| 2004 |
Kim S, Ulz ME, Nguyen T, Li CM, Sato T, Tycko B, Ju J. Thirtyfold multiplex genotyping of the p53 gene using solid phase capturable dideoxynucleotides and mass spectrometry. Genomics. 83: 924-31. PMID 15081121 DOI: 10.1016/J.Ygeno.2003.11.012 |
0.362 |
|
| 2004 |
Seo TS, Bai X, Ruparel H, Li Z, Turro NJ, Ju J. Photocleavable fluorescent nucleotides for DNA sequencing on a chip constructed by site-specific coupling chemistry. Proceedings of the National Academy of Sciences of the United States of America. 101: 5488-93. PMID 15064393 DOI: 10.1073/pnas.0401138101 |
0.802 |
|
| 2004 |
Ruparel H, Ulz ME, Kim S, Ju J. Digital detection of genetic mutations using SPC-sequencing. Genome Research. 14: 296-300. PMID 14762066 DOI: 10.1101/Gr.1344104 |
0.452 |
|
| 2004 |
Bai X, Kim S, Li Z, Turro NJ, Ju J. Design and synthesis of a photocleavable biotinylated nucleotide for DNA analysis by mass spectrometry. Nucleic Acids Research. 32: 535-41. PMID 14744978 DOI: 10.1093/Nar/Gkh198 |
0.543 |
|
| 2004 |
Li Z, Seo TS, Ju J. 1,3-Dipolar cycloaddition of azides with electron-deficient alkynes under mild condition in water Tetrahedron Letters. 45: 3143-3146. DOI: 10.1016/J.Tetlet.2004.02.089 |
0.702 |
|
| 2003 |
Kim S, Ruparel HD, Gilliam TC, Ju J. Digital genotyping using molecular affinity and mass spectrometry. Nature Reviews. Genetics. 4: 1001-8. PMID 14631360 DOI: 10.1038/Nrg1230 |
0.445 |
|
| 2003 |
Wang CC, Seo TS, Li Z, Ruparel H, Ju J. Site-specific fluorescent labeling of DNA using Staudinger ligation. Bioconjugate Chemistry. 14: 697-701. PMID 12757398 DOI: 10.1021/Bc0256392 |
0.798 |
|
| 2003 |
Kim S, Shi S, Bonome T, Ulz ME, Edwards JR, Fodstad H, Russo JJ, Ju J. Multiplex genotyping of the human beta2-adrenergic receptor gene using solid-phase capturable dideoxynucleotides and mass spectrometry. Analytical Biochemistry. 316: 251-8. PMID 12711347 DOI: 10.1016/S0003-2697(03)00080-0 |
0.398 |
|
| 2003 |
Seo TS, Li Z, Ruparel H, Ju J. Click chemistry to construct fluorescent oligonucleotides for DNA sequencing. The Journal of Organic Chemistry. 68: 609-12. PMID 12530893 DOI: 10.1021/Jo026615R |
0.807 |
|
| 2003 |
Bai X, Li Z, Jockusch S, Turro NJ, Ju J. Photocleavage of a 2-nitrobenzyl linker bridging a fluorophore to the 5' end of DNA. Proceedings of the National Academy of Sciences of the United States of America. 100: 409-13. PMID 12515854 DOI: 10.1073/Pnas.242729099 |
0.59 |
|
| 2003 |
Li Z, Bai X, Ruparel H, Kim S, Turro NJ, Ju J. A photocleavable fluorescent nucleotide for DNA sequencing and analysis. Proceedings of the National Academy of Sciences of the United States of America. 100: 414-9. PMID 12515853 DOI: 10.1073/Pnas.242729199 |
0.641 |
|
| 2002 |
Ju J. DNA sequencing with solid-phase-capturable dideoxynucleotides and energy transfer primers. Analytical Biochemistry. 309: 35-9. PMID 12381359 DOI: 10.1016/S0003-2697(02)00271-3 |
0.605 |
|
| 2002 |
Kim S, Edwards JR, Deng L, Chung W, Ju J. Solid phase capturable dideoxynucleotides for multiplex genotyping using mass spectrometry. Nucleic Acids Research. 30: e85. PMID 12177313 DOI: 10.1093/Nar/Gnf084 |
0.416 |
|
| 2002 |
Ju J, McKenna CE. Synthesis of oligodeoxyribonucleoside phosphorothioates using Lawesson's reagent for the sulfur transfer step. Bioorganic & Medicinal Chemistry Letters. 12: 1643-5. PMID 12039581 DOI: 10.1016/S0960-894X(02)00233-0 |
0.465 |
|
| 2002 |
Tong AK, Ju J. Single nucleotide polymorphism detection by combinatorial fluorescence energy transfer tags and biotinylated dideoxynucleotides. Nucleic Acids Research. 30: e19. PMID 11861924 DOI: 10.1093/Nar/30.5.E19 |
0.586 |
|
| 2001 |
Slatko BE, Albright LM, Tabor S, Ju J. DNA sequencing by the dideoxy method. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit7.4A. PMID 18265267 DOI: 10.1002/0471142727.Mb0704As47 |
0.594 |
|
| 2001 |
Tong AK, Jockusch S, Li Z, Zhu HR, Akins DL, Turro NJ, Ju J. Triple fluorescence energy transfer in covalently trichromophore-labeled DNA. Journal of the American Chemical Society. 123: 12923-4. PMID 11749560 DOI: 10.1021/Ja016904H |
0.424 |
|
| 2001 |
Edwards JR, Itagaki Y, Ju J. DNA sequencing using biotinylated dideoxynucleotides and mass spectrometry. Nucleic Acids Research. 29: E104-4. PMID 11691941 DOI: 10.1093/Nar/29.21.E104 |
0.54 |
|
| 2001 |
Tong AK, Li Z, Jones GS, Russo JJ, Ju J. Combinatorial fluorescence energy transfer tags for multiplex biological assays. Nature Biotechnology. 19: 756-9. PMID 11479569 DOI: 10.1038/90810 |
0.506 |
|
| 1996 |
Kheterpal I, Scherer JR, Clark SM, Radhakrishnan A, Ju J, Ginther CL, Sensabaugh GF, Mathies RA. DNA sequencing using a four-color confocal fluorescence capillary array scanner. Electrophoresis. 17: 1852-9. PMID 9034766 DOI: 10.1002/Elps.1150171209 |
0.737 |
|
| 1996 |
Hung SC, Ju J, Mathies RA, Glazer AN. Cyanine dyes with high absorption cross section as donor chromophores in energy transfer primers. Analytical Biochemistry. 243: 15-27. PMID 8954521 DOI: 10.1006/Abio.1996.0477 |
0.72 |
|
| 1996 |
Wang Y, Wallin JM, Ju J, Sensabaugh GF, Mathies RA. High-resolution capillary array electrophoretic sizing of multiplexed short tandem repeat loci using energy-transfer fluorescent primers. Electrophoresis. 17: 1485-90. PMID 8905265 DOI: 10.1002/Elps.1150170913 |
0.716 |
|
| 1996 |
Hung SC, Ju J, Mathies RA, Glazer AN. Energy transfer primers with 5- or 6-carboxyrhodamine-6G as acceptor chromophores. Analytical Biochemistry. 238: 165-70. PMID 8660606 DOI: 10.1006/Abio.1996.0270 |
0.717 |
|
| 1996 |
Ju J, Glazer AN, Mathies RA. Cassette labeling for facile construction of energy transfer fluorescent primers. Nucleic Acids Research. 24: 1144-8. PMID 8604350 DOI: 10.1093/Nar/24.6.1144 |
0.75 |
|
| 1996 |
Ju J, Glazer AN, Mathies RA. Energy transfer primers: a new fluorescence labeling paradigm for DNA sequencing and analysis. Nature Medicine. 2: 246-9. PMID 8574973 DOI: 10.1038/Nm0296-246 |
0.734 |
|
| 1995 |
Peng ZY, Mansour JM, Araujo F, Ju JY, McKenna CE, Mansour TE. Some phosphonic acid analogs as inhibitors of pyrophosphate-dependent phosphofructokinase, a novel target in Toxoplasma gondii. Biochemical Pharmacology. 49: 105-13. PMID 7840776 DOI: 10.1016/0006-2952(94)00437-Q |
0.434 |
|
| 1995 |
Ju J, Ruan C, Fuller CW, Glazer AN, Mathies RA. Fluorescence energy transfer dye-labeled primers for DNA sequencing and analysis. Proceedings of the National Academy of Sciences of the United States of America. 92: 4347-51. PMID 7753809 DOI: 10.1073/Pnas.92.10.4347 |
0.767 |
|
| 1995 |
Wang Y, Ju J, Carpenter BA, Atherton JM, Sensabaugh GF, Mathies RA. Rapid sizing of short tandem repeat alleles using capillary array electrophoresis and energy-transfer fluorescent primers. Analytical Chemistry. 67: 1197-203. PMID 7537476 DOI: 10.1021/Ac00103A010 |
0.708 |
|
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