Carl Hirschie Johnson, PhD, Stanford University - Publications

Affiliations: 
1987- Biological Sciences Vanderbilt University, Nashville, TN 
Area:
Biological clocks
Website:
https://as.vanderbilt.edu/johnsonlab/

156 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Kelly KP, Borsetti H, Wenzler ME, Ustione A, Kim K, Christov PP, Ramirez B, Bauer JA, Piston DW, Johnson CH, Sulikowski GA. Screen for Small-Molecule Modulators of Circadian Rhythms Reveals Phenazine as a Redox-State Modifying Clockwork Tuner. Acs Chemical Biology. PMID 35679588 DOI: 10.1021/acschembio.2c00240  0.79
2022 Shi SQ, Mahoney CE, Houdek P, Zhao W, Anderson MP, Zhuo X, Beaudet A, Sumova A, Scammell TE, Johnson CH. Circadian Rhythms and Sleep Are Dependent Upon Expression Levels of Key Ubiquitin Ligase . Frontiers in Behavioral Neuroscience. 16: 837523. PMID 35401134 DOI: 10.3389/fnbeh.2022.837523  0.783
2022 Jabbur ML, Johnson CH. Spectres of Clock Evolution: Past, Present, and Yet to Come. Frontiers in Physiology. 12: 815847. PMID 35222066 DOI: 10.3389/fphys.2021.815847  0.326
2021 Kelly KP, Ellacott KLJ, Chen H, McGuinness OP, Johnson CH. Time-optimized feeding is beneficial without enforced fasting. Open Biology. 11: 210183. PMID 34610264 DOI: 10.1098/rsob.210183  0.431
2021 Wang B, Xu Y, Wang X, Yuan JS, Johnson CH, Young JD, Yu J. A guanidine-degrading enzyme controls genomic stability of ethylene-producing cyanobacteria. Nature Communications. 12: 5150. PMID 34446715 DOI: 10.1038/s41467-021-25369-x  0.365
2021 Ralph MR, Shi SQ, Johnson CH, Houdek P, Shrestha TC, Crosby P, O'Neill JS, Sládek M, Stinchcombe AR, Sumová A. Targeted modification of the Per2 clock gene alters circadian function in mPer2luciferase (mPer2Luc) mice. Plos Computational Biology. 17: e1008987. PMID 34048425 DOI: 10.1371/journal.pcbi.1008987  0.81
2020 Fustin JM, Ye S, Rakers C, Kaneko K, Fukumoto K, Yamano M, Versteven M, Grünewald E, Cargill SJ, Tamai TK, Xu Y, Jabbur ML, Kojima R, Lamberti ML, Yoshioka-Kobayashi K, ... ... Johnson CH, et al. Publisher Correction: Methylation deficiency disrupts biological rhythms from bacteria to humans. Communications Biology. 3: 295. PMID 32499511 DOI: 10.1038/s42003-020-1031-0  0.339
2020 Fustin JM, Ye S, Rakers C, Kaneko K, Fukumoto K, Yamano M, Versteven M, Grünewald E, Cargill SJ, Tamai TK, Xu Y, Jabbur ML, Kojima R, Lamberti ML, Yoshioka-Kobayashi K, ... ... Johnson CH, et al. Methylation deficiency disrupts biological rhythms from bacteria to humans. Communications Biology. 3: 211. PMID 32376902 DOI: 10.1038/s42003-020-0942-0  0.4
2020 Cheah YE, Xu Y, Sacco SA, Babele PK, Zheng AO, Johnson CH, Young JD. Systematic identification and elimination of flux bottlenecks in the aldehyde production pathway of Synechococcus elongatus PCC 7942. Metabolic Engineering. PMID 32222320 DOI: 10.1016/J.Ymben.2020.03.007  0.449
2020 Kelly KP, McGuinness OP, Buchowski M, Hughey JJ, Chen H, Powers J, Page T, Johnson CH. Eating breakfast and avoiding late-evening snacking sustains lipid oxidation. Plos Biology. 18: e3000622. PMID 32108181 DOI: 10.1371/journal.pbio.3000622  0.534
2020 Kim P, Porr B, Mori T, Kim YS, Johnson CH, Diekman CO, Kim YI. CikA, an Input Pathway Component, Senses the Oxidized Quinone Signal to Generate Phase Delays in the Cyanobacterial Circadian Clock. Journal of Biological Rhythms. 748730419900868. PMID 31983264 DOI: 10.1177/0748730419900868  0.611
2019 Hellweger FL, Jabbur ML, Johnson CH, van Sebille E, Sasaki H. Circadian clock helps cyanobacteria manage energy in coastal and high latitude ocean. The Isme Journal. PMID 31685937 DOI: 10.1038/s41396-019-0547-0  0.434
2019 Guo G, Wang K, Hu SS, Tian T, Liu P, Mori T, Chen P, Johnson CH, Qin X. Autokinase Activity of Casein Kinase 1 δ/ε Governs the Period of Mammalian Circadian Rhythms. Journal of Biological Rhythms. 748730419865406. PMID 31392916 DOI: 10.1177/0748730419865406  0.68
2019 Shi SQ, Johnson CH. Circadian biology and sleep in monogenic neurological disorders and its potential application in drug discovery. Current Opinion in Behavioral Sciences. 25: 23-30. PMID 31289731 DOI: 10.1016/J.Cobeha.2018.06.006  0.774
2018 Mori T, Sugiyama S, Byrne M, Johnson CH, Uchihashi T, Ando T. Revealing circadian mechanisms of integration and resilience by visualizing clock proteins working in real time. Nature Communications. 9: 3245. PMID 30108211 DOI: 10.1038/S41467-018-05438-4  0.566
2018 Sugiyama S, Mori T, Byrne M, Uchihashi T, Johnson CH, Ando T. Dynamic Observation of Kai Proteins by HS-AFM Reveals a Mechanism of the Robustness in the Cyanobacterial Circadian Oscillator Biophysical Journal. 114: 68a. DOI: 10.1016/J.BPJ.2017.11.421  0.376
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, ... ... Johnson C, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.636
2017 Tackenberg MC, Johnson CH, Page TL, Daan S. Revealing Oft-cited but Unpublished Papers of Colin Pittendrigh and Coworkers. Journal of Biological Rhythms. 748730417716685. PMID 28766460 DOI: 10.1177/0748730417716685  0.779
2017 Jazmin LJ, Xu Y, Cheah YE, Adebiyi AO, Johnson CH, Young JD. Isotopically nonstationary (13)C flux analysis of cyanobacterial isobutyraldehyde production. Metabolic Engineering. PMID 28479191 DOI: 10.1016/J.Ymben.2017.05.001  0.451
2017 Johnson CH, Zhao C, Xu Y, Mori T. Timing the day: what makes bacterial clocks tick? Nature Reviews. Microbiology. PMID 28216658 DOI: 10.1038/Nrmicro.2016.196  0.774
2016 Yang J, Cumberbatch D, Centanni S, Shi SQ, Winder D, Webb D, Johnson CH. Coupling optogenetic stimulation with NanoLuc-based luminescence (BRET) Ca(++) sensing. Nature Communications. 7: 13268. PMID 27786307 DOI: 10.1038/Ncomms13268  0.752
2016 Zhang Y, Robertson JB, Xie Q, Johnson CH. Monitoring Intracellular pH Change with a Genetically Encoded and Ratiometric Luminescence Sensor in Yeast and Mammalian Cells. Methods in Molecular Biology (Clifton, N.J.). 1461: 117-30. PMID 27424899 DOI: 10.1007/978-1-4939-3813-1_9  0.773
2016 Ma P, Mori T, Zhao C, Thiel T, Johnson CH. Evolution of KaiC-Dependent Timekeepers: A Proto-circadian Timing Mechanism Confers Adaptive Fitness in the Purple Bacterium Rhodopseudomonas palustris. Plos Genetics. 12: e1005922. PMID 26982486 DOI: 10.1371/Journal.Pgen.1005922  0.82
2016 Shi SQ, White MJ, Borsetti HM, Pendergast JS, Hida A, Ciarleglio CM, de Verteuil PA, Cadar AG, Cala C, McMahon DG, Shelton RC, Williams SM, Johnson CH. Molecular analyses of circadian gene variants reveal sex-dependent links between depression and clocks. Translational Psychiatry. 6: e748. PMID 26926884 DOI: 10.1038/Tp.2016.9  0.766
2015 Mori T, Mchaourab H, Johnson CH. Circadian Clocks: Unexpected Biochemical Cogs. Current Biology : Cb. 25: R842-4. PMID 26439342 DOI: 10.1016/J.Cub.2015.08.026  0.595
2015 Qin X, Mori T, Zhang Y, Johnson CH. PER2 Differentially Regulates Clock Phosphorylation versus Transcription by Reciprocal Switching of CK1ε Activity. Journal of Biological Rhythms. 30: 206-16. PMID 25994100 DOI: 10.1177/0748730415582127  0.73
2015 Shi SQ, Bichell TJ, Ihrie RA, Johnson CH. Ube3a imprinting impairs circadian robustness in Angelman syndrome models. Current Biology : Cb. 25: 537-45. PMID 25660546 DOI: 10.1016/J.Cub.2014.12.047  0.762
2015 Egli M, Johnson CH. Biochemistry that times the day. Biochemistry. 54: 104-9. PMID 25514019 DOI: 10.1021/Bi5014968  0.451
2015 Veatch OJ, Pendergast JS, Allen MJ, Leu RM, Johnson CH, Elsea SH, Malow BA. Genetic variation in melatonin pathway enzymes in children with autism spectrum disorder and comorbid sleep onset delay. Journal of Autism and Developmental Disorders. 45: 100-10. PMID 25059483 DOI: 10.1007/S10803-014-2197-4  0.313
2014 Johnson CH, Dunlap J, Roenneberg T. Woody Hastings. Journal of Biological Rhythms. 29: 315-7. PMID 25332348 DOI: 10.1177/0748730414551667  0.378
2014 Greenberg EP, Nealson KH, Johnson CH. Woody Hastings: 65 years of fun. Proceedings of the National Academy of Sciences of the United States of America. 111: 14964-5. PMID 25271327 DOI: 10.1073/Pnas.1415972111  0.438
2014 Johnson CH, Egli M. Metabolic compensation and circadian resilience in prokaryotic cyanobacteria. Annual Review of Biochemistry. 83: 221-47. PMID 24905782 DOI: 10.1146/Annurev-Biochem-060713-035632  0.401
2014 Pattanayek R, Xu Y, Lamichhane A, Johnson CH, Egli M. An arginine tetrad as mediator of input-dependent and input-independent ATPases in the clock protein KaiC. Acta Crystallographica. Section D, Biological Crystallography. 70: 1375-90. PMID 24816106 DOI: 10.1107/S1399004714003228  0.469
2014 Yan Y, Jiang L, Aufderheide KJ, Wright GA, Terekhov A, Costa L, Qin K, McCleery WT, Fellenstein JJ, Ustione A, Robertson JB, Johnson CH, Piston DW, Hutson MS, Wikswo JP, et al. A microfluidic-enabled mechanical microcompressor for the immobilization of live single- and multi-cellular specimens. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 20: 141-51. PMID 24444078 DOI: 10.1017/S1431927613014037  0.534
2013 Robertson JB, Davis CR, Johnson CH. Visible light alters yeast metabolic rhythms by inhibiting respiration. Proceedings of the National Academy of Sciences of the United States of America. 110: 21130-5. PMID 24297928 DOI: 10.1073/Pnas.1313369110  0.614
2013 Xu Y, Weyman PD, Umetani M, Xiong J, Qin X, Xu Q, Iwasaki H, Johnson CH. Circadian yin-yang regulation and its manipulation to globally reprogram gene expression. Current Biology : Cb. 23: 2365-74. PMID 24210617 DOI: 10.1016/J.Cub.2013.10.011  0.659
2013 de la Iglesia HO, Johnson CH. Biological clocks: riding the tides. Current Biology : Cb. 23: R921-3. PMID 24156810 DOI: 10.1016/j.cub.2013.09.006  0.414
2013 Gamble KL, Resuehr D, Johnson CH. Shift work and circadian dysregulation of reproduction. Frontiers in Endocrinology. 4: 92. PMID 23966978 DOI: 10.3389/Fendo.2013.00092  0.666
2013 Villarreal SA, Pattanayek R, Williams DR, Mori T, Qin X, Johnson CH, Egli M, Stewart PL. CryoEM and molecular dynamics of the circadian KaiB-KaiC complex indicates that KaiB monomers interact with KaiC and block ATP binding clefts. Journal of Molecular Biology. 425: 3311-24. PMID 23796516 DOI: 10.1016/J.Jmb.2013.06.018  0.656
2013 Ma P, Woelfle MA, Johnson CH. An Evolutionary Fitness Enhancement Conferred by the Circadian System in Cyanobacteria. Chaos, Solitons, and Fractals. 50: 65-74. PMID 23626410 DOI: 10.1016/J.Chaos.2012.11.006  0.812
2013 Egli M, Johnson CH. A circadian clock nanomachine that runs without transcription or translation. Current Opinion in Neurobiology. 23: 732-40. PMID 23571120 DOI: 10.1016/J.Conb.2013.02.012  0.459
2013 Shi SQ, Ansari TS, McGuinness OP, Wasserman DH, Johnson CH. Circadian disruption leads to insulin resistance and obesity. Current Biology : Cb. 23: 372-81. PMID 23434278 DOI: 10.1016/J.Cub.2013.01.048  0.757
2013 Xu Y, Ma P, Shah P, Rokas A, Liu Y, Johnson CH. Non-optimal codon usage is a mechanism to achieve circadian clock conditionality. Nature. 495: 116-20. PMID 23417065 DOI: 10.1038/Nature11942  0.807
2013 Egli M, Pattanayek R, Sheehan JH, Xu Y, Mori T, Smith JA, Johnson CH. Loop-loop interactions regulate KaiA-stimulated KaiC phosphorylation in the cyanobacterial KaiABC circadian clock. Biochemistry. 52: 1208-20. PMID 23351065 DOI: 10.1021/Bi301691A  0.612
2012 Zhang Y, Xie Q, Robertson JB, Johnson CH. pHlash: a new genetically encoded and ratiometric luminescence sensor of intracellular pH. Plos One. 7: e43072. PMID 22905204 DOI: 10.1371/Journal.Pone.0043072  0.768
2012 Edgar RS, Green EW, Zhao Y, van Ooijen G, Olmedo M, Qin X, Xu Y, Pan M, Valekunja UK, Feeney KA, Maywood ES, Hastings MH, Baliga NS, Merrow M, Millar AJ, ... Johnson CH, et al. Peroxiredoxins are conserved markers of circadian rhythms. Nature. 485: 459-64. PMID 22622569 DOI: 10.1038/Nature11088  0.683
2012 Egli M, Mori T, Pattanayek R, Xu Y, Qin X, Johnson CH. Dephosphorylation of the core clock protein KaiC in the cyanobacterial KaiABC circadian oscillator proceeds via an ATP synthase mechanism. Biochemistry. 51: 1547-58. PMID 22304631 DOI: 10.1021/Bi201525N  0.696
2012 Edgar RS, Green EW, Zhao Y, van Ooijen G, Olmedo M, Qin X, Xu Y, Pan M, Valekunja UK, Feeney KA, Maywood ES, Hastings MH, Baliga NS, Merrow M, Millar AJ, ... Johnson CH, et al. Erratum: Corrigendum: Peroxiredoxins are conserved markers of circadian rhythms Nature. 489: 590-590. DOI: 10.1038/Nature11427  0.61
2011 Pattanayek R, Williams DR, Rossi G, Weigand S, Mori T, Johnson CH, Stewart PL, Egli M. Combined SAXS/EM based models of the S. elongatus post-translational circadian oscillator and its interactions with the output His-kinase SasA. Plos One. 6: e23697. PMID 21887298 DOI: 10.1371/Journal.Pone.0023697  0.556
2011 Gamble KL, Motsinger-Reif AA, Hida A, Borsetti HM, Servick SV, Ciarleglio CM, Robbins S, Hicks J, Carver K, Hamilton N, Wells N, Summar ML, McMahon DG, Johnson CH. Shift work in nurses: contribution of phenotypes and genotypes to adaptation. Plos One. 6: e18395. PMID 21533241 DOI: 10.1371/Journal.Pone.0018395  0.766
2011 Robertson JB, Johnson CH. Luminescence as a continuous real-time reporter of promoter activity in yeast undergoing respiratory oscillations or cell division rhythms. Methods in Molecular Biology (Clifton, N.J.). 734: 63-79. PMID 21468985 DOI: 10.1007/978-1-61779-086-7_4  0.587
2011 Johnson CH, Stewart PL, Egli M. The cyanobacterial circadian system: from biophysics to bioevolution. Annual Review of Biophysics. 40: 143-67. PMID 21332358 DOI: 10.1146/Annurev-Biophys-042910-155317  0.455
2011 Xie Q, Soutto M, Xu X, Zhang Y, Johnson CH. Bioluminescence resonance energy transfer (BRET) imaging in plant seedlings and mammalian cells. Methods in Molecular Biology (Clifton, N.J.). 680: 3-28. PMID 21153370 DOI: 10.1007/978-1-60761-901-7_1  0.776
2010 Johnson CH. Circadian clocks and cell division: what's the pacemaker? Cell Cycle (Georgetown, Tex.). 9: 3864-73. PMID 20890114 DOI: 10.4161/cc.9.19.13205  0.437
2010 Qin X, Byrne M, Mori T, Zou P, Williams DR, McHaourab H, Johnson CH. Intermolecular associations determine the dynamics of the circadian KaiABC oscillator. Proceedings of the National Academy of Sciences of the United States of America. 107: 14805-10. PMID 20679240 DOI: 10.1073/Pnas.1002119107  0.681
2010 Qin X, Byrne M, Xu Y, Mori T, Johnson CH. Coupling of a core post-translational pacemaker to a slave transcription/translation feedback loop in a circadian system. Plos Biology. 8: e1000394. PMID 20563306 DOI: 10.1371/Journal.Pbio.1000394  0.757
2010 Shi S, Hida A, McGuinness OP, Wasserman DH, Yamazaki S, Johnson CH. Circadian clock gene Bmal1 is not essential; functional replacement with its paralog, Bmal2. Current Biology : Cb. 20: 316-21. PMID 20153195 DOI: 10.1016/J.Cub.2009.12.034  0.815
2009 Pattanayek R, Mori T, Xu Y, Pattanayek S, Johnson CH, Egli M. Structures of KaiC circadian clock mutant proteins: a new phosphorylation site at T426 and mechanisms of kinase, ATPase and phosphatase. Plos One. 4: e7529. PMID 19956664 DOI: 10.1371/Journal.Pone.0007529  0.586
2009 Xu Y, Mori T, Qin X, Yan H, Egli M, Johnson CH. Intramolecular regulation of phosphorylation status of the circadian clock protein KaiC. Plos One. 4: e7509. PMID 19946629 DOI: 10.1371/Journal.Pone.0007509  0.702
2009 Wang Y, Ji J, Bu H, Zhao Y, Xu Y, Johnson CH, Kolár J. [Genetic transformation of Nicotiana tabacum L. by Agrobacterium tumefaciens carrying genes in the melatonin biosynthesis pathway and the enhancement of antioxidative capability in transgenic plants]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 25: 1014-21. PMID 19835142  0.354
2009 Xu X, Graeff R, Xie Q, Gamble KL, Mori T, Johnson CH. Comment on "The Arabidopsis circadian clock incorporates a cADPR-based feedback loop". Science (New York, N.Y.). 326: 230; author reply 23. PMID 19815758 DOI: 10.1126/Science.1169503  0.781
2009 Robertson JB, Zhang Y, Johnson CH. Light-emitting diode flashlights as effective and inexpensive light sources for fluorescence microscopy. Journal of Microscopy. 236: 1-4. PMID 19772530 DOI: 10.1111/J.1365-2818.2009.03208.X  0.653
2009 Johnson CH. From Skepticism to Prominence: Circadian clocks in bacteria Microbe. 4. DOI: 10.1128/Microbe.4.411.1  0.429
2009 Woelfle MA, Johnson CH. The adaptive value of the circadian clock system in cyanobacteria Bacterial Circadian Programs. 205-221. DOI: 10.1007/978-3-540-88431-6_12  0.786
2008 Hotta CT, Xu X, Xie Q, Dodd AN, Johnson CH, Webb AA. Are there multiple circadian clocks in plants? Plant Signaling & Behavior. 3: 342-4. PMID 19841666 DOI: 10.4161/Psb.3.5.5352  0.766
2008 Robertson JB, Stowers CC, Boczko E, Johnson CH. Real-time luminescence monitoring of cell-cycle and respiratory oscillations in yeast. Proceedings of the National Academy of Sciences of the United States of America. 105: 17988-93. PMID 19004762 DOI: 10.1073/Pnas.0809482105  0.612
2008 Johnson CH, Egli M, Stewart PL. Structural insights into a circadian oscillator. Science (New York, N.Y.). 322: 697-701. PMID 18974343 DOI: 10.1126/Science.1150451  0.442
2008 Vougogiannopoulou K, Ferandin Y, Bettayeb K, Myrianthopoulos V, Lozach O, Fan Y, Johnson CH, Magiatis P, Skaltsounis AL, Mikros E, Meijer L. Soluble 3',6-substituted indirubins with enhanced selectivity toward glycogen synthase kinase -3 alter circadian period. Journal of Medicinal Chemistry. 51: 6421-31. PMID 18816110 DOI: 10.1021/Jm800648Y  0.775
2008 Johnson CH, Mori T, Xu Y. A cyanobacterial circadian clockwork. Current Biology : Cb. 18: R816-R825. PMID 18786387 DOI: 10.1016/J.Cub.2008.07.012  0.708
2008 Ciarleglio CM, Ryckman KK, Servick SV, Hida A, Robbins S, Wells N, Hicks J, Larson SA, Wiedermann JP, Carver K, Hamilton N, Kidd KK, Kidd JR, Smith JR, Friedlaender J, ... ... Johnson CH, et al. Genetic differences in human circadian clock genes among worldwide populations. Journal of Biological Rhythms. 23: 330-40. PMID 18663240 DOI: 10.1177/0748730408320284  0.795
2008 Pattanayek R, Williams DR, Pattanayek S, Mori T, Johnson CH, Stewart PL, Egli M. Structural model of the circadian clock KaiB-KaiC complex and mechanism for modulation of KaiC phosphorylation. The Embo Journal. 27: 1767-78. PMID 18497745 DOI: 10.1038/Emboj.2008.104  0.558
2007 Johnson CH. Bacterial circadian programs. Cold Spring Harbor Symposia On Quantitative Biology. 72: 395-404. PMID 18419297 DOI: 10.1101/sqb.2007.72.027  0.467
2007 Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, ... ... Johnson CH, et al. A predictive model for transcriptional control of physiology in a free living cell. Cell. 131: 1354-65. PMID 18160043 DOI: 10.1016/J.Cell.2007.10.053  0.772
2007 Woelfle MA, Xu Y, Qin X, Johnson CH. Circadian rhythms of superhelical status of DNA in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 104: 18819-24. PMID 18000054 DOI: 10.1073/Pnas.0706069104  0.818
2007 Xu X, Hotta CT, Dodd AN, Love J, Sharrock R, Lee YW, Xie Q, Johnson CH, Webb AA. Distinct light and clock modulation of cytosolic free Ca2+ oscillations and rhythmic CHLOROPHYLL A/B BINDING PROTEIN2 promoter activity in Arabidopsis. The Plant Cell. 19: 3474-90. PMID 17982000 DOI: 10.1105/Tpc.106.046011  0.763
2007 Fan Y, Hida A, Anderson DA, Izumo M, Johnson CH. Cycling of CRYPTOCHROME proteins is not necessary for circadian-clock function in mammalian fibroblasts. Current Biology : Cb. 17: 1091-100. PMID 17583506 DOI: 10.1016/J.Cub.2007.05.048  0.8
2007 Xu X, Soutto M, Xie Q, Servick S, Subramanian C, von Arnim AG, Johnson CH. Imaging protein interactions with bioluminescence resonance energy transfer (BRET) in plant and mammalian cells and tissues. Proceedings of the National Academy of Sciences of the United States of America. 104: 10264-9. PMID 17551013 DOI: 10.1073/Pnas.0701987104  0.776
2007 Mori T, Williams DR, Byrne MO, Qin X, Egli M, Mchaourab HS, Stewart PL, Johnson CH. Elucidating the ticking of an in vitro circadian clockwork. Plos Biology. 5: e93. PMID 17388688 DOI: 10.1371/Journal.Pbio.0050093  0.711
2006 Woelfle MA, Johnson CH. No promoter left behind: global circadian gene expression in cyanobacteria. Journal of Biological Rhythms. 21: 419-31. PMID 17107933 DOI: 10.1177/0748730406294418  0.816
2006 Izumo M, Sato TR, Straume M, Johnson CH. Quantitative analyses of circadian gene expression in mammalian cell cultures. Plos Computational Biology. 2: e136. PMID 17040123 DOI: 10.1371/journal.pcbi.0020136  0.783
2006 Subramanian C, Woo J, Cai X, Xu X, Servick S, Johnson CH, Nebenführ A, von Arnim AG. A suite of tools and application notes for in vivo protein interaction assays using bioluminescence resonance energy transfer (BRET). The Plant Journal : For Cell and Molecular Biology. 48: 138-52. PMID 16925598 DOI: 10.1111/J.1365-313X.2006.02851.X  0.514
2006 Pattanayek R, Williams DR, Pattanayek S, Xu Y, Mori T, Johnson CH, Stewart PL, Egli M. Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods. The Embo Journal. 25: 2017-28. PMID 16628225 DOI: 10.1038/Sj.Emboj.7601086  0.644
2005 Johnson CH. Testing the adaptive value of circadian systems. Methods in Enzymology. 393: 818-37. PMID 15817326 DOI: 10.1016/S0076-6879(05)93043-7  0.359
2005 Mittag M, Kiaulehn S, Johnson CH. The circadian clock in Chlamydomonas reinhardtii. What is it for? What is it similar to? Plant Physiology. 137: 399-409. PMID 15710681 DOI: 10.1104/pp.104.052415  0.454
2005 Soutto M, Xu Y, Johnson CH. Bioluminescence Resonance Energy Transfer. Techniques and Potential Molecular Imaging. 260-271. DOI: 10.1016/B978-019517720-6.50023-7  0.52
2004 Xu Y, Mori T, Pattanayek R, Pattanayek S, Egli M, Johnson CH. Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses. Proceedings of the National Academy of Sciences of the United States of America. 101: 13933-8. PMID 15347809 DOI: 10.1073/Pnas.0404768101  0.628
2004 Woelfle MA, Ouyang Y, Phanvijhitsiri K, Johnson CH. The adaptive value of circadian clocks: an experimental assessment in cyanobacteria. Current Biology : Cb. 14: 1481-6. PMID 15324665 DOI: 10.1016/J.Cub.2004.08.023  0.808
2004 Pattanayek R, Wang J, Mori T, Xu Y, Johnson CH, Egli M. Visualizing a circadian clock protein: crystal structure of KaiC and functional insights. Molecular Cell. 15: 375-88. PMID 15304218 DOI: 10.1016/J.Molcel.2004.07.013  0.629
2004 Johnson CH. Circadian rhythms: as time glows by in bacteria. Nature. 430: 23-4. PMID 15229583 DOI: 10.1038/430023a  0.377
2004 Johnson CH, Egli M. Visualizing a biological clockwork's cogs. Nature Structural & Molecular Biology. 11: 584-5. PMID 15221019 DOI: 10.1038/Nsmb0704-584  0.379
2004 Subramanian C, Xu Y, Johnson CH, von Arnim AG. In vivo detection of protein-protein interaction in plant cells using BRET. Methods in Molecular Biology (Clifton, N.J.). 284: 271-86. PMID 15173623 DOI: 10.1385/1-59259-816-1:271  0.475
2004 Johnson CH. Precise circadian clocks in prokaryotic cyanobacteria. Current Issues in Molecular Biology. 6: 103-10. PMID 15119821  0.335
2004 Subramanian C, Kim BH, Lyssenko NN, Xu X, Johnson CH, von Arnim AG. The Arabidopsis repressor of light signaling, COP1, is regulated by nuclear exclusion: mutational analysis by bioluminescence resonance energy transfer. Proceedings of the National Academy of Sciences of the United States of America. 101: 6798-802. PMID 15084749 DOI: 10.1073/Pnas.0307964101  0.507
2004 Johnson CH. Global orchestration of gene expression by the biological clock of cyanobacteria. Genome Biology. 5: 217. PMID 15059250 DOI: 10.1186/gb-2004-5-4-217  0.459
2004 Min H, Liu Y, Johnson CH, Golden SS. Phase determination of circadian gene expression in Synechococcus elongatus PCC 7942. Journal of Biological Rhythms. 19: 103-12. PMID 15038850 DOI: 10.1177/0748730403262056  0.379
2004 Pattanayek R, Wang J, Mori T, Xu Y, Johnson CH, Egli M. Visualizing a Circadian Clock Protein Molecular Cell. 15: 841. DOI: 10.1016/j.molcel.2004.08.027  0.486
2003 Izumo M, Johnson CH, Yamazaki S. Circadian gene expression in mammalian fibroblasts revealed by real-time luminescence reporting: temperature compensation and damping. Proceedings of the National Academy of Sciences of the United States of America. 100: 16089-94. PMID 14657355 DOI: 10.1073/Pnas.2536313100  0.779
2003 Johnson CH, Elliott JA, Foster R. Entrainment of circadian programs. Chronobiology International. 20: 741-74. PMID 14535352 DOI: 10.1081/Cbi-120024211  0.383
2003 Schoenhard JA, Smith LH, Painter CA, Eren M, Johnson CH, Vaughan DE. Regulation of the PAI-1 promoter by circadian clock components: differential activation by BMAL1 and BMAL2. Journal of Molecular and Cellular Cardiology. 35: 473-81. PMID 12738229 DOI: 10.1016/S0022-2828(03)00051-8  0.449
2003 Xu Y, Mori T, Johnson CH. Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. The Embo Journal. 22: 2117-26. PMID 12727878 DOI: 10.1093/Emboj/Cdg168  0.694
2003 Xu Y, Kanauchi A, von Arnim AG, Piston DW, Johnson CH. Bioluminescence resonance energy transfer: monitoring protein-protein interactions in living cells. Methods in Enzymology. 360: 289-301. PMID 12622156 DOI: 10.1016/S0076-6879(03)60116-3  0.746
2003 Kolář J, Johnson CH, Macháčková I. Exogenously applied melatonin (N-acetyl-5-methoxytryptamine) affects flowering of the short-day plant Chenopodium rubrum Physiologia Plantarum. 118: 605-612. DOI: 10.1034/j.1399-3054.2003.00114.x  0.331
2002 Mori T, Saveliev SV, Xu Y, Stafford WF, Cox MM, Inman RB, Johnson CH. Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA. Proceedings of the National Academy of Sciences of the United States of America. 99: 17203-8. PMID 12477935 DOI: 10.1073/Pnas.262578499  0.618
2002 Xu Y, Johnson CH, Piston D. Bioluminescence resonance energy transfer assays for protein-protein interactions in living cells. Methods in Molecular Biology (Clifton, N.J.). 183: 121-33. PMID 12136748 DOI: 10.1385/1-59259-280-5:121  0.457
2002 Suzuki L, Johnson CH. Photoperiodic control of germination in the unicell Chlamydomonas. Die Naturwissenschaften. 89: 214-20. PMID 12135086 DOI: 10.1007/S00114-002-0302-6  0.766
2002 Sai J, Johnson CH. Dark-stimulated calcium ion fluxes in the chloroplast stroma and cytosol. The Plant Cell. 14: 1279-91. PMID 12084827 DOI: 10.1105/Tpc.000653  0.643
2002 Schoenhard JA, Eren M, Johnson CH, Vaughan DE. Alternative splicing yields novel BMAL2 variants: tissue distribution and functional characterization. American Journal of Physiology. Cell Physiology. 283: C103-14. PMID 12055078 DOI: 10.1152/Ajpcell.00541.2001  0.393
2001 Dassarma S, Kennedy SP, Berquist B, Victor Ng W, Baliga NS, Spudich JL, Krebs MP, Eisen JA, Johnson CH, Hood L. Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon. Photosynthesis Research. 70: 3-17. PMID 16228359 DOI: 10.1023/A:1013879706863  0.325
2001 Mori T, Johnson CH. Circadian programming in cyanobacteria. Seminars in Cell & Developmental Biology. 12: 271-8. PMID 11463211 DOI: 10.1006/Scdb.2001.0254  0.62
2001 Xu Y, Johnson CH. A clock- and light-regulated gene that links the circadian oscillator to LHCB gene expression. The Plant Cell. 13: 1411-25. PMID 11402169 DOI: 10.1105/Tpc.13.6.1411  0.569
2001 Mori T, Johnson CH. Independence of circadian timing from cell division in cyanobacteria. Journal of Bacteriology. 183: 2439-44. PMID 11274102 DOI: 10.1128/Jb.183.8.2439-2444.2001  0.604
2001 Johnson CH. Endogenous timekeepers in photosynthetic organisms. Annual Review of Physiology. 63: 695-728. PMID 11181973 DOI: 10.1146/annurev.physiol.63.1.695  0.41
2001 Wood NT, Haley A, Viry-Moussaïd M, Johnson CH, van der Luit AH, Trewavas AJ. The calcium rhythms of different cell types oscillate with different circadian phases. Plant Physiology. 125: 787-96. PMID 11161036 DOI: 10.1104/pp.125.2.787  0.381
2001 Suzuki L, Johnson CH. Algae know the time of day: Circadian and photoperiodic programs Journal of Phycology. 37: 933-942. DOI: 10.1046/J.1529-8817.2001.01094.X  0.811
2000 Xu Y, Mori T, Johnson CH. Circadian clock-protein expression in cyanobacteria: rhythms and phase setting. The Embo Journal. 19: 3349-57. PMID 10880447 DOI: 10.1093/Emboj/19.13.3349  0.654
2000 Nikaido SS, Johnson CH. Daily and circadian variation in survival from ultraviolet radiation in Chlamydomonas reinhardtii. Photochemistry and Photobiology. 71: 758-65. PMID 10857373 DOI: 10.1562/0031-8655(2000)071<0758:DACVIS>2.0.CO;2  0.77
2000 Mori T, Johnson CH. Circadian control of cell division in unicellular organisms. Progress in Cell Cycle Research. 4: 185-92. PMID 10740825 DOI: 10.1007/978-1-4615-4253-7_16  0.602
1999 Lakin-Thomas PL, Johnson CH. Commentary: molecular and cellular models of circadian systems. Journal of Biological Rhythms. 14: 486-9. PMID 10643745 DOI: 10.1177/074873099129001055  0.326
1999 Minko I, Holloway SP, Nikaido S, Carter M, Odom OW, Johnson CH, Herrin DL. Renilla luciferase as a vital reporter for chloroplast gene expression in Chlamydomonas. Molecular & General Genetics : Mgg. 262: 421-5. PMID 10589828 DOI: 10.1007/s004380051101  0.738
1999 Johnson CH, Golden SS. Circadian programs in cyanobacteria: adaptiveness and mechanism. Annual Review of Microbiology. 53: 389-409. PMID 10547696 DOI: 10.1146/Annurev.Micro.53.1.389  0.444
1999 Sai J, Johnson CH. Different circadian oscillators control Ca(2+) fluxes and lhcb gene expression. Proceedings of the National Academy of Sciences of the United States of America. 96: 11659-63. PMID 10500233 DOI: 10.1073/Pnas.96.20.11659  0.686
1999 Xu Y, Piston DW, Johnson CH. A bioluminescence resonance energy transfer (BRET) system: application to interacting circadian clock proteins. Proceedings of the National Academy of Sciences of the United States of America. 96: 151-6. PMID 9874787 DOI: 10.1073/Pnas.96.1.151  0.494
1998 Golden SS, Johnson CH, Kondo T. The cyanobacterial circadian system: a clock apart. Current Opinion in Microbiology. 1: 669-73. PMID 10066545 DOI: 10.1016/S1369-5274(98)80113-6  0.39
1998 Johnson CH, Golden SS, Kondo T. Adaptive significance of circadian programs in cyanobacteria. Trends in Microbiology. 6: 407-10. PMID 9807785 DOI: 10.1016/S0966-842X(98)01356-0  0.404
1998 Ishiura M, Kutsuna S, Aoki S, Iwasaki H, Andersson CR, Tanabe A, Golden SS, Johnson CH, Kondo T. Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science (New York, N.Y.). 281: 1519-23. PMID 9727980 DOI: 10.1126/Science.281.5382.1519  0.433
1998 Ouyang Y, Andersson CR, Kondo T, Golden SS, Johnson CH. Resonating circadian clocks enhance fitness in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 95: 8660-4. PMID 9671734 DOI: 10.1073/Pnas.95.15.8660  0.682
1997 Golden SS, Ishiura M, Johnson CH, Kondo T. CYANOBACTERIAL CIRCADIAN RHYTHMS. Annual Review of Plant Physiology and Plant Molecular Biology. 48: 327-354. PMID 15012266 DOI: 10.1146/annurev.arplant.48.1.327  0.368
1996 Jacobshagen S, Kindle KL, Johnson CH. Transcription of CABII is regulated by the biological clock in Chlamydomonas reinhardtii. Plant Molecular Biology. 31: 1173-84. PMID 8914533 DOI: 10.1007/Bf00040834  0.805
1996 Johnson CH, Golden SS, Ishiura M, Kondo T. Circadian clocks in prokaryotes. Molecular Microbiology. 21: 5-11. PMID 8843429 DOI: 10.1046/J.1365-2958.1996.00613.X  0.447
1996 Mori T, Binder B, Johnson CH. Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours. Proceedings of the National Academy of Sciences of the United States of America. 93: 10183-8. PMID 8816773 DOI: 10.1073/Pnas.93.19.10183  0.569
1996 Liu Y, Tsinoremas NF, Golden SS, Kondo T, Johnson CH. Circadian expression of genes involved in the purine biosynthetic pathway of the cyanobacterium Synechococcus sp. strain PCC 7942. Molecular Microbiology. 20: 1071-81. PMID 8809759 DOI: 10.1111/J.1365-2958.1996.Tb02547.X  0.372
1996 Tsinoremas NF, Ishiura M, Kondo T, Andersson CR, Tanaka K, Takahashi H, Johnson CH, Golden SS. A sigma factor that modifies the circadian expression of a subset of genes in cyanobacteria. The Embo Journal. 15: 2488-95. PMID 8665856 DOI: 10.1002/J.1460-2075.1996.Tb00606.X  0.371
1995 Goto K, Johnson CH. Is the cell division cycle gated by a circadian clock? The case of Chlamydomonas reinhardtii. The Journal of Cell Biology. 129: 1061-9. PMID 7744955 DOI: 10.1083/Jcb.129.4.1061  0.429
1995 Liu Y, Tsinoremas NF, Johnson CH, Lebedeva NV, Golden SS, Ishiura M, Kondo T. Circadian orchestration of gene expression in cyanobacteria. Genes & Development. 9: 1469-78. PMID 7601351 DOI: 10.1101/Gad.9.12.1469  0.374
1995 Johnson CH, Knight MR, Kondo T, Masson P, Sedbrook J, Haley A, Trewavas A. Circadian oscillations of cytosolic and chloroplastic free calcium in plants. Science (New York, N.Y.). 269: 1863-5. PMID 7569925 DOI: 10.1126/Science.7569925  0.336
1995 Liu Y, Golden SS, Kondo T, Ishiura M, Johnson CH. Bacterial luciferase as a reporter of circadian gene expression in cyanobacteria. Journal of Bacteriology. 177: 2080-6. PMID 7536731 DOI: 10.1128/Jb.177.8.2080-2086.1995  0.441
1994 Kondo T, Tsinoremas NF, Golden SS, Johnson CH, Kutsuna S, Ishiura M. Circadian clock mutants of cyanobacteria. Science (New York, N.Y.). 266: 1233-6. PMID 7973706 DOI: 10.1126/Science.7973706  0.398
1994 Johnson CH. Illuminating the clock: circadian photobiology. Seminars in Cell Biology. 5: 355-62. PMID 7881075 DOI: 10.1006/Scel.1994.1042  0.448
1993 Kondo T, Strayer CA, Kulkarni RD, Taylor W, Ishiura M, Golden SS, Johnson CH. Circadian rhythms in prokaryotes: luciferase as a reporter of circadian gene expression in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 90: 5672-6. PMID 8516317 DOI: 10.1073/Pnas.90.12.5672  0.46
1992 Byrne TE, Wells MR, Johnson CH. Circadian rhythms of chemotaxis to ammonium and of methylammonium uptake in chlamydomonas. Plant Physiology. 98: 879-86. PMID 16668759 DOI: 10.1104/Pp.98.3.879  0.401
1992 Johnson CH, Kondo T. Light pulses induce "singular" behavior and shorten the period of the circadian phototaxis rhythm in the CW15 strain of Chlamydomonas. Journal of Biological Rhythms. 7: 313-27. PMID 1286203 DOI: 10.1177/074873049200700405  0.375
1991 Johnson CH, Kondo T, Hastings JW. Action Spectrum for Resetting the Circadian Phototaxis Rhythm in the CW15 Strain of Chlamydomonas: II. Illuminated Cells. Plant Physiology. 97: 1122-9. PMID 16668498 DOI: 10.1104/Pp.97.3.1122  0.382
1991 Kondo T, Johnson CH, Hastings JW. Action Spectrum for Resetting the Circadian Phototaxis Rhythm in the CW15 Strain of Chlamydomonas: I. Cells in Darkness. Plant Physiology. 95: 197-205. PMID 16667951 DOI: 10.1104/Pp.95.1.197  0.376
1990 Johnson CH, Nakashima H. Cycloheximide inhibits light-induced phase shifting of the circadian clock in Neurospora. Journal of Biological Rhythms. 5: 159-67. PMID 2133125 DOI: 10.1177/074873049000500207  0.389
1989 Johnson CH, Hastings JW. Circadian phototransduction: phase resetting and frequency of the circadian clock of Gonyaulax cells in red light. Journal of Biological Rhythms. 4: 417-37. PMID 2519604 DOI: 10.1177/074873048900400403  0.379
1989 Johnson CH, Miwa I, Kondo T, Hastings JW. Circadian rhythm of photoaccumulation in Paramecium bursaria. Journal of Biological Rhythms. 4: 405-15. PMID 2519603 DOI: 10.1177/074873048900400402  0.42
1987 Olesiak W, Ungar A, Johnson CH, Hastings JW. Are protein synthesis inhibition and phase shifting of the circadian clock in Gonyaulax correlated? Journal of Biological Rhythms. 2: 121-38. PMID 2979654 DOI: 10.1177/074873048700200204  0.334
1985 Johnson CH, Inoué S, Flint A, Hastings JW. Compartmentalization of algal bioluminescence: autofluorescence of bioluminescent particles in the dinoflagellate Gonyaulax as studied with image-intensified video microscopy and flow cytometry. The Journal of Cell Biology. 100: 1435-46. PMID 4039325 DOI: 10.1083/jcb.100.5.1435  0.305
1985 Dubé F, Schmidt T, Johnson CH, Epel D. The hierarchy of requirements for an elevated intracellular pH during early development of sea urchin embryos. Cell. 40: 657-66. PMID 4038629 DOI: 10.1016/0092-8674(85)90214-4  0.648
1984 Johnson CH, Roeber JF, Hastings JW. Circadian changes in enzyme concentration account for rhythm of enzyme activity in gonyaulax. Science (New York, N.Y.). 223: 1428-30. PMID 17746055 DOI: 10.1126/science.223.4643.1428  0.36
1983 Johnson CH. Changes in Intracellular pH Are Not Correlated with the Circadian Rhythm of Neurospora. Plant Physiology. 72: 129-33. PMID 16662945 DOI: 10.1104/Pp.72.1.129  0.335
1983 Johnson CH, Epel D. Heavy metal chelators prolong motility and viability of sea urchin sperm by inhibiting spontaneous acrosome reactions. The Journal of Experimental Zoology. 226: 431-40. PMID 6886666 DOI: 10.1002/jez.1402260314  0.523
1983 Lee HC, Johnson C, Epel D. Changes in internal pH associated with initiation of motility and acrosome reaction of sea urchin sperm. Developmental Biology. 95: 31-45. PMID 6825930 DOI: 10.1016/0012-1606(83)90004-0  0.544
1983 Johnson CH, Clapper DL, Winkler MM, Lee HC, Epel D. A volatile inhibitor immobilizes sea urchin sperm in semen by depressing the intracellular pH. Developmental Biology. 98: 493-501. PMID 6307774 DOI: 10.1016/0012-1606(83)90378-0  0.744
1982 Johnson CH, Epel D. Starfish oocyte maturation and fertilization: intracellular pH is not involved in activation. Developmental Biology. 92: 461-9. PMID 7117694 DOI: 10.1016/0012-1606(82)90191-9  0.529
1981 Johnson CH, Epel D. Intracellular pH of sea urchin eggs measured by the dimethyloxazolidinedione (DMO) method. The Journal of Cell Biology. 89: 284-91. PMID 7195903 DOI: 10.1083/Jcb.89.2.284  0.533
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