| Year |
Citation |
Score |
| 2024 |
Song Y, Huang R, Li L, Wang M, Wang S, Ferry JG, Yan Z. Response to comment on "humic acid-dependent respiratory growth of Methanosarcina acetivorans involves pyrroloquinoline quinone" by Yuanxu song et al. The Isme Journal. PMID 38366059 DOI: 10.1093/ismejo/wrae019 |
0.348 |
|
| 2023 |
Song Y, Huang R, Li L, Du K, Zhu F, Song C, Yuan X, Wang M, Wang S, Ferry JG, Zhou S, Yan Z. Humic acid-dependent respiratory growth of Methanosarcina acetivorans involves pyrroloquinoline quinone. The Isme Journal. 17: 2103-2111. PMID 37737251 DOI: 10.1038/s41396-023-01520-y |
0.454 |
|
| 2020 |
Ferry JG. : A Model for Mechanistic Understanding of Aceticlastic and Reverse Methanogenesis. Frontiers in Microbiology. 11: 1806. PMID 32849414 DOI: 10.3389/Fmicb.2020.01806 |
0.308 |
|
| 2019 |
Prakash D, Iyer PR, Suharti S, Walters KA, Santiago-Martinez MG, Golbeck JH, Murakami KS, Ferry JG. Structure and function of an unusual flavodoxin from the domain . Proceedings of the National Academy of Sciences of the United States of America. PMID 31801875 DOI: 10.1073/Pnas.1908578116 |
0.391 |
|
| 2019 |
Guan Y, Ngugi DK, Vinu M, Blom J, Alam I, Guillot S, Ferry JG, Stingl U. Comparative Genomics of the Genus , Including a Newly Isolated Strain From Kebrit Deep in the Red Sea. Frontiers in Microbiology. 10: 839. PMID 31068917 DOI: 10.3389/Fmicb.2019.00839 |
0.314 |
|
| 2018 |
Yan Z, Ferry JG. Electron Bifurcation and Confurcation in Methanogenesis and Reverse Methanogenesis. Frontiers in Microbiology. 9: 1322. PMID 29973922 DOI: 10.3389/Fmicb.2018.01322 |
0.307 |
|
| 2018 |
Prakash D, Walters KA, Martinie RJ, McCarver AC, Kumar AK, Lessner DJ, Krebs C, Golbeck JH, Ferry JG. Towards a mechanistic and physiological understanding of a ferredoxin disulfide reductase from the domains and . The Journal of Biological Chemistry. PMID 29720404 DOI: 10.1074/Jbc.Ra118.002473 |
0.399 |
|
| 2018 |
Yan Z, Joshi P, Gorski CA, Ferry JG. A biochemical framework for anaerobic oxidation of methane driven by Fe(III)-dependent respiration. Nature Communications. 9: 1642. PMID 29691409 DOI: 10.1038/S41467-018-04097-9 |
0.321 |
|
| 2018 |
Vullo D, Kumar RSS, Scozzafava A, Ferry JG, Supuran CT. Sulphonamide inhibition studies of the β-carbonic anhydrase from the bacterial pathogen Clostridium perfringens. Journal of Enzyme Inhibition and Medicinal Chemistry. 33: 31-36. PMID 29098923 DOI: 10.1080/14756366.2017.1388233 |
0.343 |
|
| 2018 |
Grisewood MJ, Ferry JG, Maranas CD. Computationally Exploring and Alleviating the Kinetic Bottlenecks of Anaerobic Methane Oxidation Frontiers in Environmental Science. 6. DOI: 10.3389/Fenvs.2018.00084 |
0.376 |
|
| 2017 |
Guan Y, Haroon MF, Alam I, Ferry JG, Stingl U. Single-cell genomics reveals pyrrolysine-encoding potential in members of uncultivated archaeal candidate division MSBL1. Environmental Microbiology Reports. PMID 28493460 DOI: 10.1111/1758-2229.12545 |
0.336 |
|
| 2017 |
Yan Z, Wang M, Ferry JG. A Ferredoxin- and F420H2-Dependent, Electron-Bifurcating, Heterodisulfide Reductase with Homologs in the Domains Bacteria and Archaea. Mbio. 8. PMID 28174314 DOI: 10.1128/Mbio.02285-16 |
0.561 |
|
| 2016 |
Jasso-Chávez R, Diaz-Perez C, Rodríguez-Zavala JS, Ferry JG. Functional Role of MrpA in the MrpABCDEFG Na+/H+ Antiporter Complex from the Archaeon Methanosarcina acetivorans. Journal of Bacteriology. PMID 27799324 DOI: 10.1128/Jb.00662-16 |
0.349 |
|
| 2016 |
Nazem-Bokaee H, Gopalakrishnan S, Ferry JG, Wood TK, Maranas CD. Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans. Microbial Cell Factories. 15: 10. PMID 26776497 DOI: 10.1186/S12934-015-0404-4 |
0.327 |
|
| 2015 |
Yenugudhati D, Prakash D, Kumar AK, Kumar RS, Yennawar NH, Yennawar HP, Ferry JG. Structural and Biochemical Characterization of Methanoredoxin from Methanosarcina acetivorans, a Glutaredoxin-Like Enzyme with Coenzyme M-Dependent Protein Disulfide Reductase Activity. Biochemistry. PMID 26684934 DOI: 10.1021/Acs.Biochem.5B00823 |
0.444 |
|
| 2015 |
Wei Y, Li B, Prakash D, Ferry JG, Elliott SJ, Stubbe J. A ferredoxin disulfide reductase delivers electrons to the Methanosarcina barkeri class III ribonucleotide reductase. Biochemistry. PMID 26536144 DOI: 10.1021/Acs.Biochem.5B01092 |
0.323 |
|
| 2015 |
Ferry JG. Acetate Metabolism in Anaerobes from the Domain Archaea. Life (Basel, Switzerland). 5: 1454-71. PMID 26068860 DOI: 10.3390/Life5021454 |
0.377 |
|
| 2015 |
Kumar AK, Kumar RS, Yennawar NH, Yennawar HP, Ferry JG. Structural and Biochemical Characterization of a Ferredoxin:Thioredoxin Reductase-like Enzyme from Methanosarcina acetivorans. Biochemistry. 54: 3122-8. PMID 25915695 DOI: 10.1021/Acs.Biochem.5B00137 |
0.447 |
|
| 2015 |
Mueller TJ, Grisewood MJ, Nazem-Bokaee H, Gopalakrishnan S, Ferry JG, Wood TK, Maranas CD. Methane oxidation by anaerobic archaea for conversion to liquid fuels. Journal of Industrial Microbiology & Biotechnology. 42: 391-401. PMID 25427790 DOI: 10.1007/S10295-014-1548-7 |
0.329 |
|
| 2014 |
Suharti S, Wang M, de Vries S, Ferry JG. Characterization of the RnfB and RnfG subunits of the Rnf complex from the archaeon Methanosarcina acetivorans. Plos One. 9: e97966. PMID 24836163 DOI: 10.1371/Journal.Pone.0097966 |
0.529 |
|
| 2014 |
Kumar RS, Ferry JG. Prokaryotic carbonic anhydrases of Earth's environment. Sub-Cellular Biochemistry. 75: 77-87. PMID 24146375 DOI: 10.1007/978-94-007-7359-2_5 |
0.342 |
|
| 2013 |
Vullo D, Sai Kumar RS, Scozzafava A, Capasso C, Ferry JG, Supuran CT. Anion inhibition studies of a β-carbonic anhydrase from Clostridium perfringens. Bioorganic & Medicinal Chemistry Letters. 23: 6706-10. PMID 24210500 DOI: 10.1016/J.Bmcl.2013.10.037 |
0.394 |
|
| 2013 |
Jasso-Chávez R, Apolinario EE, Sowers KR, Ferry JG. MrpA functions in energy conversion during acetate-dependent growth of Methanosarcina acetivorans. Journal of Bacteriology. 195: 3987-94. PMID 23836862 DOI: 10.1128/Jb.00581-13 |
0.346 |
|
| 2013 |
Kumar RS, Hendrick W, Correll JB, Patterson AD, Melville SB, Ferry JG. Biochemistry and physiology of the β class carbonic anhydrase (Cpb) from Clostridium perfringens strain 13. Journal of Bacteriology. 195: 2262-9. PMID 23475974 DOI: 10.1128/Jb.02288-12 |
0.365 |
|
| 2013 |
Ferry JG. Carbonic anhydrases of anaerobic microbes. Bioorganic & Medicinal Chemistry. 21: 1392-5. PMID 23267670 DOI: 10.1016/J.Bmc.2012.12.005 |
0.308 |
|
| 2013 |
Zimmerman S, Domsic JF, Tu C, Robbins AH, McKenna R, Silverman DN, Ferry JG. Role of Trp19 and Tyr200 in catalysis by the γ-class carbonic anhydrase from Methanosarcina thermophila. Archives of Biochemistry and Biophysics. 529: 11-7. PMID 23111186 DOI: 10.1016/J.Abb.2012.10.010 |
0.686 |
|
| 2012 |
Reichlen MJ, Vepachedu VR, Murakami KS, Ferry JG. MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans. Mbio. 3: e00189-12. PMID 22851658 DOI: 10.1128/Mbio.00189-12 |
0.783 |
|
| 2012 |
Vepachedu VR, Ferry JG. Role of the fused corrinoid/methyl transfer protein CmtA during CO-dependent growth of Methanosarcina acetivorans. Journal of Bacteriology. 194: 4161-8. PMID 22636775 DOI: 10.1128/Jb.00593-12 |
0.385 |
|
| 2011 |
Kumar AK, Yennawar NH, Yennawar HP, Ferry JG. Expression, purification, crystallization and preliminary X-ray crystallographic analysis of a novel plant-type ferredoxin/thioredoxin reductase-like protein from Methanosarcina acetivorans. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 67: 775-8. PMID 21795791 DOI: 10.1107/S1744309111017234 |
0.367 |
|
| 2011 |
Wang M, Tomb JF, Ferry JG. Electron transport in acetate-grown Methanosarcina acetivorans. Bmc Microbiology. 11: 165. PMID 21781343 DOI: 10.1186/1471-2180-11-165 |
0.509 |
|
| 2011 |
Ferry JG. Acetate kinase and phosphotransacetylase. Methods in Enzymology. 494: 219-31. PMID 21402217 DOI: 10.1016/B978-0-12-385112-3.00011-1 |
0.449 |
|
| 2010 |
Lessner DJ, Lhu L, Wahal CS, Ferry JG. An engineered methanogenic pathway derived from the domains Bacteria and Archaea. Mbio. 1. PMID 21060738 DOI: 10.1128/Mbio.00243-10 |
0.368 |
|
| 2010 |
Ferry JG. How to make a living by exhaling methane. Annual Review of Microbiology. 64: 453-73. PMID 20528692 DOI: 10.1146/Annurev.Micro.112408.134051 |
0.379 |
|
| 2010 |
Reichlen MJ, Murakami KS, Ferry JG. Functional analysis of the three TATA binding protein homologs in Methanosarcina acetivorans. Journal of Bacteriology. 192: 1511-7. PMID 20081030 DOI: 10.1128/Jb.01165-09 |
0.773 |
|
| 2010 |
Zimmerman SA, Tomb JF, Ferry JG. Characterization of CamH from Methanosarcina thermophila, founding member of a subclass of the {gamma} class of carbonic anhydrases. Journal of Bacteriology. 192: 1353-60. PMID 20023030 DOI: 10.1128/Jb.01164-09 |
0.673 |
|
| 2010 |
Ferry JG. The gamma class of carbonic anhydrases. Biochimica Et Biophysica Acta. 1804: 374-81. PMID 19747990 DOI: 10.1016/J.Bbapap.2009.08.026 |
0.406 |
|
| 2010 |
Ferry JG. The chemical biology of methanogenesis Planetary and Space Science. 58: 1775-1783. DOI: 10.1016/J.Pss.2010.08.014 |
0.301 |
|
| 2010 |
Ferry JG. CO in methanogenesis Annals of Microbiology. 60: 1-12. DOI: 10.1007/S13213-009-0008-5 |
0.319 |
|
| 2009 |
Zafar MN, Tasca F, Gorton L, Patridge EV, Ferry JG, Nöll G. Tryptophan repressor-binding proteins from Escherichia coli and Archaeoglobus fulgidus as new catalysts for 1,4-dihydronicotinamide adenine dinucleotide-dependent amperometric biosensors and biofuel cells. Analytical Chemistry. 81: 4082-8. PMID 19438267 DOI: 10.1021/Ac900365N |
0.756 |
|
| 2009 |
Doerfert SN, Reichlen M, Iyer P, Wang M, Ferry JG. Methanolobus zinderi sp. nov., a methylotrophic methanogen isolated from a deep subsurface coal seam. International Journal of Systematic and Evolutionary Microbiology. 59: 1064-9. PMID 19406794 DOI: 10.1099/Ijs.0.003772-0 |
0.745 |
|
| 2009 |
Macauley SR, Zimmerman SA, Apolinario EE, Evilia C, Hou YM, Ferry JG, Sowers KR. The archetype gamma-class carbonic anhydrase (Cam) contains iron when synthesized in vivo. Biochemistry. 48: 817-9. PMID 19187031 DOI: 10.1021/Bi802246S |
0.659 |
|
| 2008 |
Innocenti A, Zimmerman SA, Scozzafava A, Ferry JG, Supuran CT. Carbonic anhydrase activators: activation of the archaeal beta-class (Cab) and gamma-class (Cam) carbonic anhydrases with amino acids and amines. Bioorganic & Medicinal Chemistry Letters. 18: 6194-8. PMID 18930395 DOI: 10.1016/J.Bmcl.2008.10.005 |
0.666 |
|
| 2008 |
Suharti S, Murakami KS, de Vries S, Ferry JG. Structural and biochemical characterization of flavoredoxin from the archaeon Methanosarcina acetivorans. Biochemistry. 47: 11528-35. PMID 18842001 DOI: 10.1021/Bi801012P |
0.369 |
|
| 2008 |
Ferry JG, Lessner DJ. Methanogenesis in marine sediments. Annals of the New York Academy of Sciences. 1125: 147-57. PMID 18378593 DOI: 10.1196/Annals.1419.007 |
0.323 |
|
| 2008 |
Zimmerman SA, Ferry JG. The beta and gamma classes of carbonic anhydrase. Current Pharmaceutical Design. 14: 716-21. PMID 18336318 DOI: 10.2174/138161208783877929 |
0.621 |
|
| 2007 |
Gorrell A, Ferry JG. Investigation of the Methanosarcina thermophila acetate kinase mechanism by fluorescence quenching. Biochemistry. 46: 14170-6. PMID 17999468 DOI: 10.1021/Bi701292A |
0.4 |
|
| 2007 |
Andrade SL, Patridge EV, Ferry JG, Einsle O. Crystal structure of the NADH:quinone oxidoreductase WrbA from Escherichia coli. Journal of Bacteriology. 189: 9101-7. PMID 17951395 DOI: 10.1128/Jb.01336-07 |
0.772 |
|
| 2007 |
Lessner DJ, Ferry JG. The archaeon Methanosarcina acetivorans contains a protein disulfide reductase with an iron-sulfur cluster. Journal of Bacteriology. 189: 7475-84. PMID 17675382 DOI: 10.1128/Jb.00891-07 |
0.341 |
|
| 2007 |
Zimmerman SA, Ferry JG, Supuran CT. Inhibition of the archaeal beta-class (Cab) and gamma-class (Cam) carbonic anhydrases. Current Topics in Medicinal Chemistry. 7: 901-8. PMID 17504135 DOI: 10.2174/156802607780636753 |
0.65 |
|
| 2007 |
Li L, Li Q, Rohlin L, Kim U, Salmon K, Rejtar T, Gunsalus RP, Karger BL, Ferry JG. Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. Journal of Proteome Research. 6: 759-71. PMID 17269732 DOI: 10.1021/Pr060383L |
0.359 |
|
| 2006 |
Lessner DJ, Li L, Li Q, Rejtar T, Andreev VP, Reichlen M, Hill K, Moran JJ, Karger BL, Ferry JG. An unconventional pathway for reduction of CO2 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics. Proceedings of the National Academy of Sciences of the United States of America. 103: 17921-6. PMID 17101988 DOI: 10.1073/Pnas.0608833103 |
0.787 |
|
| 2006 |
Patridge EV, Ferry JG. WrbA from Escherichia coli and Archaeoglobus fulgidus is an NAD(P)H:quinone oxidoreductase. Journal of Bacteriology. 188: 3498-506. PMID 16672604 DOI: 10.1128/Jb.188.10.3498-3506.2006 |
0.782 |
|
| 2006 |
Cruz F, Ferry JG. Interaction of iron-sulfur flavoprotein with oxygen and hydrogen peroxide. Biochimica Et Biophysica Acta. 1760: 858-64. PMID 16624489 DOI: 10.1016/J.Bbagen.2006.02.016 |
0.505 |
|
| 2006 |
Zimmerman SA, Ferry JG. Proposal for a hydrogen bond network in the active site of the prototypic gamma-class carbonic anhydrase. Biochemistry. 45: 5149-57. PMID 16618104 DOI: 10.1021/Bi052507Y |
0.69 |
|
| 2006 |
Lawrence SH, Ferry JG. Steady-state kinetic analysis of phosphotransacetylase from Methanosarcina thermophila. Journal of Bacteriology. 188: 1155-8. PMID 16428419 DOI: 10.1128/Jb.188.3.1155-1158.2006 |
0.656 |
|
| 2006 |
Lawrence SH, Luther KB, Schindelin H, Ferry JG. Structural and functional studies suggest a catalytic mechanism for the phosphotransacetylase from Methanosarcina thermophila. Journal of Bacteriology. 188: 1143-54. PMID 16428418 DOI: 10.1128/Jb.188.3.1143-1154.2006 |
0.685 |
|
| 2006 |
Li Q, Li L, Rejtar T, Lessner DJ, Karger BL, Ferry JG. Electron transport in the pathway of acetate conversion to methane in the marine archaeon Methanosarcina acetivorans. Journal of Bacteriology. 188: 702-10. PMID 16385060 DOI: 10.1128/Jb.188.2.702-710.2006 |
0.359 |
|
| 2006 |
Rasche ME, Ferry JG. Methanogens and the Archaebacteria, Molecular Biology of Reviews in Cell Biology and Molecular Medicine. DOI: 10.1002/3527600906.Mcb.200400019 |
0.32 |
|
| 2005 |
Andrade SL, Cruz F, Drennan CL, Ramakrishnan V, Rees DC, Ferry JG, Einsle O. Structures of the iron-sulfur flavoproteins from Methanosarcina thermophila and Archaeoglobus fulgidus. Journal of Bacteriology. 187: 3848-54. PMID 15901710 DOI: 10.1128/Jb.187.11.3848-3854.2005 |
0.534 |
|
| 2005 |
Ingram-Smith C, Gorrell A, Lawrence SH, Iyer P, Smith K, Ferry JG. Characterization of the acetate binding pocket in the Methanosarcina thermophila acetate kinase. Journal of Bacteriology. 187: 2386-94. PMID 15774882 DOI: 10.1128/Jb.187.7.2386-2394.2005 |
0.799 |
|
| 2005 |
Li Q, Li L, Rejtar T, Karger BL, Ferry JG. Proteome of Methanosarcina acetivorans Part II: comparison of protein levels in acetate- and methanol-grown cells. Journal of Proteome Research. 4: 129-35. PMID 15707367 DOI: 10.1021/Pr049831K |
0.378 |
|
| 2005 |
Li Q, Li L, Rejtar T, Karger BL, Ferry JG. Proteome of Methanosarcina acetivorans Part I: an expanded view of the biology of the cell. Journal of Proteome Research. 4: 112-28. PMID 15707366 DOI: 10.1021/Pr049832C |
0.368 |
|
| 2005 |
Gorrell A, Lawrence SH, Ferry JG. Structural and kinetic analyses of arginine residues in the active site of the acetate kinase from Methanosarcina thermophila. The Journal of Biological Chemistry. 280: 10731-42. PMID 15647264 DOI: 10.1074/Jbc.M412118200 |
0.685 |
|
| 2004 |
Parisi G, Perales M, Fornasari MS, Colaneri A, González-Schain N, Gómez-Casati D, Zimmermann S, Brennicke A, Araya A, Ferry JG, Echave J, Zabaleta E. Gamma carbonic anhydrases in plant mitochondria. Plant Molecular Biology. 55: 193-207. PMID 15604675 DOI: 10.1007/S11103-004-0149-7 |
0.371 |
|
| 2004 |
Zimmerman S, Innocenti A, Casini A, Ferry JG, Scozzafava A, Supuran CT. Carbonic anhydrase inhibitors. Inhibition of the prokariotic beta and gamma-class enzymes from Archaea with sulfonamides. Bioorganic & Medicinal Chemistry Letters. 14: 6001-6. PMID 15546717 DOI: 10.1016/J.Bmcl.2004.09.085 |
0.647 |
|
| 2004 |
Innocenti A, Zimmerman S, Ferry JG, Scozzafava A, Supuran CT. Carbonic anhydrase inhibitors. Inhibition of the beta-class enzyme from the methanoarchaeon Methanobacterium thermoautotrophicum (Cab) with anions. Bioorganic & Medicinal Chemistry Letters. 14: 4563-7. PMID 15357993 DOI: 10.1016/J.Bmcl.2004.06.073 |
0.677 |
|
| 2004 |
Innocenti A, Zimmerman S, Ferry JG, Scozzafava A, Supuran CT. Carbonic anhydrase inhibitors. Inhibition of the zinc and cobalt gamma-class enzyme from the archaeon Methanosarcina thermophila with anions. Bioorganic & Medicinal Chemistry Letters. 14: 3327-31. PMID 15149700 DOI: 10.1016/J.Bmcl.2004.03.101 |
0.689 |
|
| 2004 |
Iyer PP, Lawrence SH, Luther KB, Rajashankar KR, Yennawar HP, Ferry JG, Schindelin H. Crystal structure of phosphotransacetylase from the methanogenic archaeon Methanosarcina thermophila. Structure (London, England : 1993). 12: 559-67. PMID 15062079 DOI: 10.1016/J.Str.2004.03.007 |
0.789 |
|
| 2004 |
Ding YH, Ferry JG. Flavin mononucleotide-binding flavoprotein family in the domain Archaea. Journal of Bacteriology. 186: 90-7. PMID 14679228 DOI: 10.1128/Jb.186.1.90-97.2004 |
0.356 |
|
| 2004 |
Tripp BC, Bell CB, Cruz F, Krebs C, Ferry JG. A role for iron in an ancient carbonic anhydrase. The Journal of Biological Chemistry. 279: 6683-7. PMID 14662760 DOI: 10.1074/Jbc.M311648200 |
0.565 |
|
| 2003 |
Iyer PP, Lawrence SH, Yennawar HP, Ferry JG. Expression, purification, crystallization and preliminary X-ray analysis of phosphotransacetylase from Methanosarcina thermophila. Acta Crystallographica. Section D, Biological Crystallography. 59: 1517-20. PMID 12876371 DOI: 10.1107/S0907444903013428 |
0.764 |
|
| 2002 |
Tu C, Rowlett RS, Tripp BC, Ferry JG, Silverman DN. Chemical rescue of proton transfer in catalysis by carbonic anhydrases in the beta- and gamma-class. Biochemistry. 41: 15429-35. PMID 12484784 DOI: 10.1021/Bi026831U |
0.337 |
|
| 2002 |
Ding YH, Zhang SP, Tomb JF, Ferry JG. Genomic and proteomic analyses reveal multiple homologs of genes encoding enzymes of the methanol:coenzyme M methyltransferase system that are differentially expressed in methanol- and acetate-grown Methanosarcina thermophila. Fems Microbiology Letters. 215: 127-32. PMID 12393212 DOI: 10.1111/J.1574-6968.2002.Tb11381.X |
0.378 |
|
| 2002 |
Smith KS, Ingram-Smith C, Ferry JG. Roles of the conserved aspartate and arginine in the catalytic mechanism of an archaeal beta-class carbonic anhydrase. Journal of Bacteriology. 184: 4240-5. PMID 12107142 DOI: 10.1128/Jb.184.15.4240-4245.2002 |
0.363 |
|
| 2002 |
Miles RD, Gorrell A, Ferry JG. Evidence for a transition state analog, MgADP-aluminum fluoride-acetate, in acetate kinase from Methanosarcina thermophila. The Journal of Biological Chemistry. 277: 22547-52. PMID 11960978 DOI: 10.1074/Jbc.M105921200 |
0.598 |
|
| 2002 |
Galagan JE, Nusbaum C, Roy A, Endrizzi MG, Macdonald P, FitzHugh W, Calvo S, Engels R, Smirnov S, Atnoor D, Brown A, Allen N, Naylor J, Stange-Thomann N, DeArellano K, ... ... Ferry JG, et al. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Research. 12: 532-42. PMID 11932238 DOI: 10.1101/Gr.223902 |
0.345 |
|
| 2002 |
Tripp BC, Tu C, Ferry JG. Role of arginine 59 in the gamma-class carbonic anhydrases. Biochemistry. 41: 669-78. PMID 11781108 DOI: 10.1021/Bi010768B |
0.334 |
|
| 2001 |
Tripp BC, Smith K, Ferry JG. Carbonic Anhydrase: New Insights for an Ancient Enzyme Journal of Biological Chemistry. 276: 48615-48618. PMID 11696553 DOI: 10.1074/Jbc.R100045200 |
0.348 |
|
| 2001 |
Zhao T, Cruz F, Ferry JG. Iron-sulfur flavoprotein (Isf) from Methanosarcina thermophila is the prototype of a widely distributed family. Journal of Bacteriology. 183: 6225-33. PMID 11591665 DOI: 10.1128/Jb.183.21.6225-6233.2001 |
0.536 |
|
| 2001 |
Miles RD, Iyer PP, Ferry JG. Site-directed mutational analysis of active site residues in the acetate kinase from Methanosarcina thermophila. The Journal of Biological Chemistry. 276: 45059-64. PMID 11562377 DOI: 10.1074/Jbc.M108355200 |
0.795 |
|
| 2001 |
Iyer PP, Ferry JG. Role of arginines in coenzyme A binding and catalysis by the phosphotransacetylase from Methanosarcina thermophila. Journal of Bacteriology. 183: 4244-50. PMID 11418565 DOI: 10.1128/Jb.183.14.4244-4250.2001 |
0.774 |
|
| 2001 |
Tu C, Tripp BC, Ferry JG, Silverman DN. Bicarbonate as a proton donor in catalysis by Zn(II)- and Co(II)-containing carbonic anhydrases Journal of the American Chemical Society. 123: 5861-5866. PMID 11414818 DOI: 10.1021/Ja010301O |
0.35 |
|
| 2001 |
Buss KA, Cooper DR, Ingram-Smith C, Ferry JG, Sanders DA, Hasson MS. Urkinase: structure of acetate kinase, a member of the ASKHA superfamily of phosphotransferases. Journal of Bacteriology. 183: 680-6. PMID 11133963 DOI: 10.1128/Jb.183.2.680-686.2001 |
0.364 |
|
| 2001 |
Strop P, Smith KS, Iverson TM, Ferry JG, Rees DC. Crystal structure of the "cab"-type beta class carbonic anhydrase from the archaeon Methanobacterium thermoautotrophicum. The Journal of Biological Chemistry. 276: 10299-305. PMID 11096105 DOI: 10.1074/Jbc.M009182200 |
0.351 |
|
| 2000 |
Smith KS, Cosper NJ, Stalhandske C, Scott RA, Ferry JG. Structural and kinetic characterization of an archaeal beta-class carbonic anhydrase. Journal of Bacteriology. 182: 6605-13. PMID 11073902 DOI: 10.1128/Jb.182.23.6605-6613.2000 |
0.381 |
|
| 2000 |
Smith KS, Ferry JG. Prokaryotic carbonic anhydrases. Fems Microbiology Reviews. 24: 335-66. PMID 10978542 DOI: 10.1111/J.1574-6976.2000.Tb00546.X |
0.406 |
|
| 2000 |
Ingram-Smith C, Barber RD, Ferry JG. The role of histidines in the acetate kinase from Methanosarcina thermophila Journal of Biological Chemistry. 275: 33765-33770. PMID 10958794 DOI: 10.1074/Jbc.M005303200 |
0.417 |
|
| 2000 |
Borup B, Ferry JG. Cysteine biosynthesis in the Archaea: Methanosarcina thermophila utilizes O-acetylserine sulfhydrylase. Fems Microbiology Letters. 189: 205-10. PMID 10930739 DOI: 10.1111/J.1574-6968.2000.Tb09231.X |
0.771 |
|
| 2000 |
Tripp BC, Ferry JG. A structure-function study of a proton transport pathway in the γ-class carbonic anhydrase from Methanosarcina thermophila Biochemistry. 39: 9232-9240. PMID 10924116 DOI: 10.1021/Bi0001877 |
0.366 |
|
| 2000 |
Iverson TM, Alber BE, Kisker C, Ferry JG, Rees DC. A closer look at the active site of gamma-class carbonic anhydrases: high-resolution crystallographic studies of the carbonic anhydrase from Methanosarcina thermophila. Biochemistry. 39: 9222-31. PMID 10924115 DOI: 10.1021/Bi000204S |
0.405 |
|
| 2000 |
Singh-Wissmann K, Miles RD, Ingram-Smith C, Ferry JG. Identification of essential arginines in the acetate kinase from Methanosarcina thermophila. Biochemistry. 39: 3671-7. PMID 10736166 DOI: 10.1021/Bi991998H |
0.592 |
|
| 2000 |
Borup B, Ferry JG. O-Acetylserine sulfhydrylase from Methanosarcina thermophila. Journal of Bacteriology. 182: 45-50. PMID 10613861 DOI: 10.1128/Jb.182.1.45-50.2000 |
0.783 |
|
| 1999 |
Smith KS, Jakubzick C, Whittam TS, Ferry JG. Carbonic anhydrase is an ancient enzyme widespread in prokaryotes. Proceedings of the National Academy of Sciences of the United States of America. 96: 15184-9. PMID 10611359 DOI: 10.1073/Pnas.96.26.15184 |
0.397 |
|
| 1999 |
Alber BE, Colangelo CM, Dong J, Stålhandske CM, Baird TT, Tu C, Fierke CA, Silverman DN, Scott RA, Ferry JG. Kinetic and spectroscopic characterization of the gamma-carbonic anhydrase from the methanoarchaeon Methanosarcina thermophila. Biochemistry. 38: 13119-28. PMID 10529183 DOI: 10.1021/Bi9828876 |
0.355 |
|
| 1999 |
Smith KS, Ferry JG. A plant-type (beta-class) carbonic anhydrase in the thermophilic methanoarchaeon Methanobacterium thermoautotrophicum. Journal of Bacteriology. 181: 6247-53. PMID 10515911 DOI: 10.1128/Jb.181.20.6247-6253.1999 |
0.404 |
|
| 1999 |
Ferry JG. Enzymology of one-carbon metabolism in methanogenic pathways Fems Microbiology Reviews. 23: 13-38. PMID 10077852 DOI: 10.1111/J.1574-6976.1999.Tb00390.X |
0.37 |
|
| 1998 |
Becker DF, Leartsakulpanich U, Surerus KK, Ferry JG, Ragsdale SW. Electrochemical and spectroscopic properties of the iron-sulfur flavoprotein from Methanosarcina thermophila Journal of Biological Chemistry. 273: 26462-26469. PMID 9756881 DOI: 10.1074/Jbc.273.41.26462 |
0.344 |
|
| 1998 |
Maupin-Furlow JA, Aldrich HC, Ferry JG. Biochemical characterization of the 20S proteasome from the methanoarchaeon Methanosarcina thermophila Journal of Bacteriology. 180: 1480-1487. PMID 9515917 DOI: 10.1128/Jb.180.6.1480-1487.1998 |
0.363 |
|
| 1998 |
Singh-Wissmann K, Ingram-Smith C, Miles RD, Ferry JG. Identification of essential glutamates in the acetate kinase from Methanosarcina thermophila. Journal of Bacteriology. 180: 1129-34. PMID 9495750 DOI: 10.1128/Jb.180.5.1129-1134.1998 |
0.628 |
|
| 1997 |
Rasche ME, Smith KS, Ferry JG. Identification of cysteine and arginine residues essential for the phosphotransacetylase from Methanosarcina thermophila. Journal of Bacteriology. 179: 7712-7. PMID 9401029 DOI: 10.1128/Jb.179.24.7712-7717.1997 |
0.407 |
|
| 1997 |
Ferry JG. Enzymology of the fermentation of acetate to methane by Methanosarcina thermophila Biofactors. 6: 25-35. PMID 9233537 DOI: 10.1002/Biof.5520060104 |
0.369 |
|
| 1996 |
Maupin-Furlow JA, Ferry JG. Analysis of the CO dehydrogenase/acetyl-coenzyme A synthase operon of Mmethanosarcina thermophila Journal of Bacteriology. 178: 6849-6856. PMID 8955306 DOI: 10.1128/Jb.178.23.6849-6856.1996 |
0.322 |
|
| 1996 |
Latimer MT, Painter MH, Ferry JG. Characterization of an iron-sulfur flavoprotein from Methanosarcina thermophila Journal of Biological Chemistry. 271: 24023-24028. PMID 8798638 DOI: 10.1074/Jbc.271.39.24023 |
0.338 |
|
| 1996 |
Alber BE, Ferry JG. Characterization of heterologously produced carbonic anhydrase from Methanosarcina thermophila Journal of Bacteriology. 178: 3270-3274. PMID 8655508 DOI: 10.1128/Jb.178.11.3270-3274.1996 |
0.426 |
|
| 1996 |
Maupin-Furlow J, Ferry JG. Characterization of the cdhD and cdhE genes encoding subunits of the corrinoid/iron-sulfur enzyme of the CO dehydrogenase complex from Methanosarcina thermophila Journal of Bacteriology. 178: 340-346. PMID 8550451 DOI: 10.1128/Jb.178.2.340-346.1996 |
0.38 |
|
| 1996 |
Jablonski PE, Pheasant DJ, Ferry JG. Conversion of Kepone by Methanosarcina thermophila Fems Microbiology Letters. 139: 169-173. DOI: 10.1111/J.1574-6968.1996.Tb08198.X |
0.355 |
|
| 1996 |
Kisker C, Schindelin H, Alber BE, Ferry JG, Rees DC. A left-hand beta-helix revealed by the crystal structure of a carbonic anhydrase from the archaeon Methanosarcina thermophila. The Embo Journal. 15: 2323-2330. DOI: 10.1002/J.1460-2075.1996.Tb00588.X |
0.414 |
|
| 1995 |
Singh-Wissmann K, Ferry JG. Transcriptional regulation of the phosphotransacetylase-encoding and acetate kinase-encoding genes (pta and ack) from Methanosarcina thermophila Journal of Bacteriology. 177: 1699-1702. PMID 7896690 DOI: 10.1128/Jb.177.7.1699-1702.1995 |
0.33 |
|
| 1994 |
Alber BE, Ferry JG. A carbonic anhydrase from the archaeon Methanosarcina thermophila Proceedings of the National Academy of Sciences of the United States of America. 91: 6909-6913. PMID 8041719 DOI: 10.1073/Pnas.91.15.6909 |
0.338 |
|
| 1994 |
Peer CW, Painter MH, Rasche ME, Ferry JG. Characterization of a CO:heterodisulfide oxidoreductase system from acetate-grown Methanosarcina thermophila Journal of Bacteriology. 176: 6974-6979. PMID 7961460 DOI: 10.1128/Jb.176.22.6974-6979.1994 |
0.342 |
|
| 1993 |
Haddock JD, Ferry JG. Initial steps in the anaerobic degradation of 3,4,5-trihydroxybenzoate by Eubacterium oxidoreducens: Characterization of mutants and role of 1,2,3,5- tetrahydroxybenzene Journal of Bacteriology. 175: 669-673. PMID 8423143 DOI: 10.1128/Jb.175.3.669-673.1993 |
0.351 |
|
| 1993 |
Latimer MT, Ferry JG. Cloning, sequence analysis, and hyperexpression of the genes encoding phosphotransacetylase and acetate kinase from Methanosarcina thermophila Journal of Bacteriology. 175: 6822-6829. PMID 8226623 DOI: 10.1128/Jb.175.21.6822-6829.1993 |
0.394 |
|
| 1992 |
Jablonski PE, Ferry JG. Reductive dechlorination of trichloroethylene by the CO-reduced CO dehydrogenase enzyme complex from Methanosarcina thermophila Fems Microbiology Letters. 96: 55-60. PMID 1526465 DOI: 10.1016/0378-1097(92)90456-X |
0.307 |
|
| 1992 |
Ferry JG. Methane from acetate Journal of Bacteriology. 174: 5489-5495. PMID 1512186 DOI: 10.1128/Jb.174.17.5489-5495.1992 |
0.331 |
|
| 1992 |
Ferry JG. Biochemistry of methanogenesis Critical Reviews in Biochemistry and Molecular Biology. 27: 473-503. PMID 1473352 DOI: 10.3109/10409239209082570 |
0.303 |
|
| 1992 |
Clements AP, Ferry JG. Cloning, nucleotide sequence, and transcriptional analyses of the gene encoding a ferredoxin from Methanosarcina thermophila Journal of Bacteriology. 174: 5244-5250. PMID 1379583 DOI: 10.1128/Jb.174.16.5244-5250.1992 |
0.327 |
|
| 1991 |
Johnson JL, Bastian NR, Schauer NL, Ferry JG, Rajagopalan KV. Identification of molybdopterin guanine dinucleotide in formate dehydrogenase from Methanobacterium formicicum. Fems Microbiology Letters. 61: 213-6. PMID 2037231 DOI: 10.1111/J.1574-6968.1991.Tb04350.X |
0.341 |
|
| 1991 |
Jablonski PE, Ferry JG. Purification and properties of methyl coenzyme M methylreductase from acetate-grown Methanosarcina thermophila Journal of Bacteriology. 173: 2481-2487. PMID 2013570 DOI: 10.1128/Jb.173.8.2481-2487.1991 |
0.409 |
|
| 1991 |
Raybuck SA, Ramer SE, Abbanat DR, Peters JW, Orme-Johnson WH, Ferry JG, Walsh CT. Demonstration of carbon-carbon bond cleavage of acetyl coenzyme A by using isotopic exchange catalyzed by the CO dehydrogenase complex from acetate-grown Methanosarcina thermophila. Journal of Bacteriology. 173: 929-32. PMID 1987173 DOI: 10.1128/Jb.173.2.929-932.1991 |
0.417 |
|
| 1991 |
Abbanat DR, Ferry JG. Resolution of component proteins in an enzyme complex from Methanosarcina thermophila catalyzing the synthesis or cleavage of acetyl-CoA Proceedings of the National Academy of Sciences of the United States of America. 88: 3272-3276. DOI: 10.1073/Pnas.88.8.3272 |
0.338 |
|
| 1990 |
Jablonski PE, DiMarco AA, Bobik TA, Cabell MC, Ferry JG. Protein content and enzyme activities in methanol- and acetate-grown Methanosarcina thermophila Journal of Bacteriology. 172: 1271-1275. PMID 2307649 DOI: 10.1128/Jb.172.3.1271-1275.1990 |
0.39 |
|
| 1990 |
Abbanat DR, Ferry JG. Synthesis of acetyl coenzyme A by carbon monoxide dehydrogenase complex from acetate-grown Methanosarcina thermophila Journal of Bacteriology. 172: 7145-7150. PMID 2123865 DOI: 10.1128/Jb.172.12.7145-7150.1990 |
0.347 |
|
| 1989 |
Baron SF, Ferry JG. Purification and properties of the membrane-associated coenzyme F420-reducing hydrogenase from Methanobacterium formicicum Journal of Bacteriology. 171: 3846-3853. PMID 2738024 DOI: 10.1128/Jb.171.7.3846-3853.1989 |
0.333 |
|
| 1989 |
Baron SF, Williams DS, May HD, Patel PS, Aldrich HC, Ferry JG. Immunogold localization of coenzyme F420-reducing formate dehydrogenase and coenzyme F420-reducing hydrogenase in Methanobacterium formicicum Archives of Microbiology. 151: 307-313. DOI: 10.1007/Bf00406556 |
0.308 |
|
| 1988 |
Biavati B, Vasta M, Ferry JG. Isolation and characterization of "Methanosphaera cuniculi" sp. nov Applied and Environmental Microbiology. 54: 768-771. PMID 3132100 DOI: 10.1128/Aem.54.3.768-771.1988 |
0.306 |
|
| 1988 |
May HD, Patel PS, Ferry JG. Effect of molybdenum and tungsten on synthesis and composition of formate dehydrogenase in Methanobacterium formicicum Journal of Bacteriology. 170: 3384-3389. PMID 2457011 DOI: 10.1128/Jb.170.8.3384-3389.1988 |
0.411 |
|
| 1986 |
Schauer NL, Ferry JG. Composition of the coenzyme F420-dependent formate dehydrogenase from Methanobacterium formicicum Journal of Bacteriology. 165: 405-411. PMID 3944055 DOI: 10.1128/Jb.165.2.405-411.1986 |
0.367 |
|
| 1986 |
Schauer NL, Ferry JG, Honek JF, Orme-Johnson WH, Walsh C. Mechanistic studies of the coenzyme F420 reducing formate dehydrogenase from Methanobacterium formicicum. Biochemistry. 25: 7163-8. PMID 3801411 DOI: 10.1021/Bi00370A059 |
0.325 |
|
| 1986 |
May HD, Schauer NL, Ferry JG. Molybdopterin cofactor from Methanobacterium formicicum formate dehydrogenase Journal of Bacteriology. 166: 500-504. PMID 3700335 DOI: 10.1128/Jb.166.2.500-504.1986 |
0.355 |
|
| 1986 |
Terlesky KC, Nelson MJ, Ferry JG. Isolation of an enzyme complex with carbon monoxide dehydrogenase activity containing corrinoid and nickel from acetate-grown Methanosarcina thermophila. Journal of Bacteriology. 168: 1053-8. PMID 3023296 DOI: 10.1128/Jb.168.3.1053-1058.1986 |
0.435 |
|
| 1986 |
Barber MJ, May HD, Ferry JG. Inactivation of formate dehydrogenase from Methanobacterium formicicum by cyanide Biochemistry. 25: 8150-8155. DOI: 10.1021/Bi00373A004 |
0.301 |
|
| 1984 |
Nelson MJ, Ferry JG. Carbon monoxide-dependent methyl coenzyme M methylreductase in acetotrophic Methosarcina spp. Journal of Bacteriology. 160: 526-32. PMID 6501214 DOI: 10.1128/Jb.160.2.526-532.1984 |
0.373 |
|
| 1984 |
Lovley DR, White RH, Ferry JG. Identification of methyl coenzyme M as an intermediate in methanogenesis from acetate in Methanosarcina spp Journal of Bacteriology. 160: 521-525. PMID 6438056 DOI: 10.1128/Jb.160.2.521-525.1984 |
0.324 |
|
| 1984 |
Lovley DR, Greening RC, Ferry JG. Rapidly growing rumen methanogenic organism that synthesizes coenzyme M and has a high affinity for formate Applied and Environmental Microbiology. 48: 81-87. PMID 6433795 DOI: 10.1128/Aem.48.1.81-87.1984 |
0.346 |
|
| 1984 |
Sowers KR, Baron SF, Ferry JG. Methanosarcina acetivorans sp. nov., an Acetotrophic Methane-Producing Bacterium Isolated from Marine Sediments Applied and Environmental Microbiology. 47: 971-978. DOI: 10.1128/Aem.47.5.971-978.1984 |
0.344 |
|
| 1983 |
Schauer NL, Ferry JG. FAD requirement for the reduction of coenzyme F420 by formate dehydrogenase from Methanobacterium formicicum Journal of Bacteriology. 155: 467-472. PMID 6874636 DOI: 10.1128/Jb.155.2.467-472.1983 |
0.302 |
|
| 1983 |
Sowers KR, Ferry JG. Isolation and characterization of a methylotrophic marine methanogen, Methanococcoides methylutens gen. nov., sp. nov Applied and Environmental Microbiology. 45: 684-690. DOI: 10.1128/Aem.45.2.684-690.1983 |
0.329 |
|
| 1982 |
Schauer NL, Brown DP, Ferry JG. Kinetics of Formate Metabolism in Methanobacterium formicicum and Methanospirillum hungatei. Applied and Environmental Microbiology. 44: 549-54. PMID 16346087 DOI: 10.1128/Aem.44.3.549-554.1982 |
0.313 |
|
| 1982 |
Schauer NL, Ferry JG. Properties of formate dehydrogenase in Methanobacterium formicicum Journal of Bacteriology. 150: 1-7. PMID 7061389 DOI: 10.1128/Jb.150.1.1-7.1982 |
0.341 |
|
| 1977 |
Ferry JG, Wolfe RS. Nutritional and biochemical characterization of Methanospirillum hungatii Applied and Environmental Microbiology. 34: 371-376. PMID 411420 DOI: 10.1128/Aem.34.4.371-376.1977 |
0.352 |
|
| 1974 |
Ferry JG, Smith PH, Wolfe RS. Methanospirillum, a new genus of methanogenic bacteria, and characterization of methanospirillum hungatii sp.nov International Journal of Systematic Bacteriology. 24: 465-469. DOI: 10.1099/00207713-24-4-465 |
0.333 |
|
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