| Year |
Citation |
Score |
| 2017 |
Islam MS, Saito JA, Emdad EM, Ahmed B, Islam MM, Halim A, Hossen QM, Hossain MZ, Ahmed R, Hossain MS, Kabir SM, Khan MS, Khan MM, Hasan R, Aktar N, ... ... Alam MM, ... ... Alam M, et al. Comparative genomics of two jute species and insight into fibre biogenesis. Nature Plants. 3: 16223. PMID 28134914 DOI: 10.1038/Nplants.2016.223 |
0.351 |
|
| 2015 |
Teh BS, Lau NS, Ng FL, Abdul Rahman AY, Wan X, Saito JA, Hou S, Teh AH, Najimudin N, Alam M. Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia. Standards in Genomic Sciences. 10: 76. PMID 26457128 DOI: 10.1186/S40793-015-0053-6 |
0.377 |
|
| 2015 |
Wan X, Hou S, Phan N, Malone Moss JS, Donachie SP, Alam M. Draft Genome Sequence of Pantoea anthophila Strain 11-2 from Hypersaline Lake Laysan, Hawaii. Genome Announcements. 3. PMID 25977417 DOI: 10.1128/Genomea.00321-15 |
0.35 |
|
| 2013 |
Ong SY, Pratap CB, Wan X, Hou S, Rahman AY, Saito JA, Nath G, Alam M. The Genomic Blueprint of Salmonella enterica subspecies enterica serovar Typhi P-stx-12. Standards in Genomic Sciences. 7: 483-96. PMID 24019994 DOI: 10.4056/Sigs.3286690 |
0.358 |
|
| 2013 |
McHunu NP, Permaul K, Abdul Rahman AY, Saito JA, Singh S, Alam M. Xylanase Superproducer: Genome Sequence of a Compost-Loving Thermophilic Fungus, Thermomyces lanuginosus Strain SSBP. Genome Announcements. 1. PMID 23788551 DOI: 10.1128/Genomea.00388-13 |
0.334 |
|
| 2013 |
Rahman AY, Usharraj AO, Misra BB, Thottathil GP, Jayasekaran K, Feng Y, Hou S, Ong SY, Ng FL, Lee LS, Tan HS, Sakaff MK, Teh BS, Khoo BF, Badai SS, ... Alam M, et al. Draft genome sequence of the rubber tree Hevea brasiliensis. Bmc Genomics. 14: 75. PMID 23375136 DOI: 10.1186/1471-2164-14-75 |
0.303 |
|
| 2012 |
Saw JH, Yuryev A, Kanbe M, Hou S, Young AG, Aizawa S, Alam M. Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium. Standards in Genomic Sciences. 6: 84-93. PMID 22675601 DOI: 10.4056/Sigs.2445005 |
0.395 |
|
| 2012 |
Ong SY, Pratap CB, Wan X, Hou S, Abdul Rahman AY, Saito JA, Nath G, Alam M. Complete genome sequence of Salmonella enterica subsp. enterica serovar Typhi P-stx-12. Journal of Bacteriology. 194: 2115-6. PMID 22461552 DOI: 10.1128/Jb.00121-12 |
0.337 |
|
| 2012 |
Teh BS, Abdul Rahman AY, Saito JA, Hou S, Alam M. Complete genome sequence of the thermophilic bacterium Thermus sp. strain CCB_US3_UF1. Journal of Bacteriology. 194: 1240. PMID 22328745 DOI: 10.1128/Jb.06589-11 |
0.328 |
|
| 2012 |
Muhd Sakaff MK, Abdul Rahman AY, Saito JA, Hou S, Alam M. Complete genome sequence of the thermophilic bacterium Geobacillus thermoleovorans CCB_US3_UF5. Journal of Bacteriology. 194: 1239. PMID 22328744 DOI: 10.1128/Jb.06580-11 |
0.352 |
|
| 2011 |
Teh AH, Saito JA, Baharuddin A, Tuckerman JR, Newhouse JS, Kanbe M, Newhouse EI, Rahim RA, Favier F, Didierjean C, Sousa EH, Stott MB, Dunfield PF, Gonzalez G, Gilles-Gonzalez MA, ... Alam M, et al. Hell's Gate globin I: an acid and thermostable bacterial hemoglobin resembling mammalian neuroglobin. Febs Letters. 585: 3250-8. PMID 21925500 DOI: 10.1016/J.Febslet.2011.09.002 |
0.301 |
|
| 2010 |
Ong SY, Ng FL, Badai SS, Yuryev A, Alam M. Analysis and construction of pathogenicity island regulatory pathways in Salmonella enterica serovar Typhi. Journal of Integrative Bioinformatics. 7. PMID 20861532 DOI: 10.2390/Biecoll-Jib-2010-145 |
0.311 |
|
| 2010 |
Tamas I, Dedysh SN, Liesack W, Stott MB, Alam M, Murrell JC, Dunfield PF. Complete genome sequence of Beijerinckia indica subsp. indica. Journal of Bacteriology. 192: 4532-3. PMID 20601475 DOI: 10.1128/Jb.00656-10 |
0.346 |
|
| 2010 |
Chen Y, Crombie A, Rahman MT, Dedysh SN, Liesack W, Stott MB, Alam M, Theisen AR, Murrell JC, Dunfield PF. Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2. Journal of Bacteriology. 192: 3840-1. PMID 20472789 DOI: 10.1128/Jb.00506-10 |
0.319 |
|
| 2009 |
Yu Q, Tong E, Skelton RL, Bowers JE, Jones MR, Murray JE, Hou S, Guan P, Acob RA, Luo MC, Moore PH, Alam M, Paterson AH, Ming R. A physical map of the papaya genome with integrated genetic map and genome sequence. Bmc Genomics. 10: 371. PMID 19664231 DOI: 10.1186/1471-2164-10-371 |
0.338 |
|
| 2009 |
Wan X, Tuckerman JR, Saito JA, Freitas TA, Newhouse JS, Denery JR, Galperin MY, Gonzalez G, Gilles-Gonzalez MA, Alam M. Globins synthesize the second messenger bis-(3'-5')-cyclic diguanosine monophosphate in bacteria. Journal of Molecular Biology. 388: 262-70. PMID 19285985 DOI: 10.1016/J.Jmb.2009.03.015 |
0.312 |
|
| 2009 |
Porter BW, Paidi M, Ming R, Alam M, Nishijima WT, Zhu YJ. Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family. Molecular Genetics and Genomics : Mgg. 281: 609-26. PMID 19263082 DOI: 10.1007/S00438-009-0434-X |
0.352 |
|
| 2009 |
Pesce A, Thijs L, Nardini M, Desmet F, Sisinni L, Gourlay L, Bolli A, Coletta M, Van Doorslaer S, Wan X, Alam M, Ascenzi P, Moens L, Bolognesi M, Dewilde S. HisE11 and HisF8 provide bis-histidyl heme hexa-coordination in the globin domain of Geobacter sulfurreducens globin-coupled sensor. Journal of Molecular Biology. 386: 246-60. PMID 19109973 DOI: 10.1016/J.Jmb.2008.12.023 |
0.31 |
|
| 2008 |
Shakirov EV, Salzberg SL, Alam M, Shippen DE. Analysis of Carica papaya Telomeres and Telomere-Associated Proteins: Insights into the Evolution of Telomere Maintenance in Brassicales. Tropical Plant Biology. 1: 202-215. PMID 20664721 DOI: 10.1007/S12042-008-9018-X |
0.361 |
|
| 2008 |
Lyons E, Pedersen B, Kane J, Alam M, Ming R, Tang H, Wang X, Bowers J, Paterson A, Lisch D, Freeling M. Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids. Plant Physiology. 148: 1772-81. PMID 18952863 DOI: 10.1104/Pp.108.124867 |
0.377 |
|
| 2008 |
Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Research. 18: 1924-37. PMID 18836034 DOI: 10.1101/Gr.081026.108 |
0.304 |
|
| 2008 |
Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Research. 18: 1944-54. PMID 18832442 DOI: 10.1101/Gr.080978.108 |
0.355 |
|
| 2008 |
Hou S, Makarova KS, Saw JH, Senin P, Ly BV, Zhou Z, Ren Y, Wang J, Galperin MY, Omelchenko MV, Wolf YI, Yutin N, Koonin EV, Stott MB, Mountain BW, ... ... Alam M, et al. Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia. Biology Direct. 3: 26. PMID 18593465 DOI: 10.1186/1745-6150-3-26 |
0.332 |
|
| 2008 |
Saito JA, Wan X, Lee KS, Hou S, Alam M. Globin-coupled sensors and protoglobins share a common signaling mechanism. Febs Letters. 582: 1840-6. PMID 18486614 DOI: 10.1016/J.Febslet.2008.05.004 |
0.323 |
|
| 2008 |
Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH. Synteny and collinearity in plant genomes. Science (New York, N.Y.). 320: 486-8. PMID 18436778 DOI: 10.1126/Science.1153917 |
0.348 |
|
| 2008 |
Saito JA, Freitas TA, Alam M. Cloning, expression, and purification of the N-terminal heme-binding domain of globin-coupled sensors. Methods in Enzymology. 437: 163-72. PMID 18433628 DOI: 10.1016/S0076-6879(07)37009-2 |
0.303 |
|
| 2008 |
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, ... ... Alam M, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/Nature06856 |
0.367 |
|
| 2008 |
Stott MB, Crowe MA, Mountain BW, Smirnova AV, Hou S, Alam M, Dunfield PF. Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand. Environmental Microbiology. 10: 2030-41. PMID 18422642 DOI: 10.1111/J.1462-2920.2008.01621.X |
0.305 |
|
| 2008 |
Stott MB, Saito JA, Crowe MA, Dunfield PF, Hou S, Nakasone E, Daughney CJ, Smirnova AV, Mountain BW, Takai K, Alam M. Culture-independent characterization of a novel microbial community at a hydrothermal vent at Brothers volcano, Kermadec arc, New Zealand Journal of Geophysical Research: Solid Earth. 113. DOI: 10.1029/2007Jb005477 |
0.329 |
|
| 2008 |
Wang J, Chen C, Na J, Yu Q, Hou S, Paull RE, Moore PH, Alam M, Ming R. Genome-Wide Comparative Analyses of Microsatellites in Papaya Tropical Plant Biology. 1: 278-292. DOI: 10.1007/S12042-008-9024-Z |
0.359 |
|
| 2008 |
Suzuki JY, Tripathi S, Fermín GA, Jan F, Hou S, Saw JH, Ackerman CM, Yu Q, Schatz MC, Pitz KY, Yépes M, Fitch MMM, Manshardt RM, Slightom JL, Ferreira SA, ... ... Alam M, et al. Characterization of Insertion Sites in Rainbow Papaya, the First Commercialized Transgenic Fruit Crop Tropical Plant Biology. 1: 293-309. DOI: 10.1007/S12042-008-9023-0 |
0.361 |
|
| 2008 |
Nelson DR, Ming R, Alam M, Schuler MA. Comparison of Cytochrome P450 Genes from Six Plant Genomes Tropical Plant Biology. 1: 216-235. DOI: 10.1007/S12042-008-9022-1 |
0.343 |
|
| 2008 |
Paull RE, Irikura B, Wu P, Turano H, Chen NJ, Blas A, Fellman JK, Gschwend AR, Wai CM, Yu Q, Presting G, Alam M, Ming R. Fruit Development, Ripening and Quality Related Genes in the Papaya Genome Tropical Plant Biology. 1: 246-277. DOI: 10.1007/S12042-008-9021-2 |
0.329 |
|
| 2008 |
Nagarajan N, Navajas-Pérez R, Pop M, Alam M, Ming R, Paterson AH, Salzberg SL. Genome-Wide Analysis of Repetitive Elements in Papaya Tropical Plant Biology. 1: 191-201. DOI: 10.1007/S12042-008-9015-0 |
0.363 |
|
| 2007 |
Dunfield PF, Yuryev A, Senin P, Smirnova AV, Stott MB, Hou S, Ly B, Saw JH, Zhou Z, Ren Y, Wang J, Mountain BW, Crowe MA, Weatherby TM, Bodelier PL, ... ... Alam M, et al. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature. 450: 879-82. PMID 18004300 DOI: 10.1038/Nature06411 |
0.328 |
|
| 2007 |
Thijs L, Vinck E, Bolli A, Trandafir F, Wan X, Hoogewijs D, Coletta M, Fago A, Weber RE, Van Doorslaer S, Ascenzi P, Alam M, Moens L, Dewilde S. Characterization of a globin-coupled oxygen sensor with a gene-regulating function. The Journal of Biological Chemistry. 282: 37325-40. PMID 17925395 DOI: 10.1074/Jbc.M705541200 |
0.304 |
|
| 2007 |
Yu Q, Hou S, Hobza R, Feltus FA, Wang X, Jin W, Skelton RL, Blas A, Lemke C, Saw JH, Moore PH, Alam M, Jiang J, Paterson AH, Vyskot B, et al. Chromosomal location and gene paucity of the male specific region on papaya Y chromosome. Molecular Genetics and Genomics : Mgg. 278: 177-85. PMID 17520292 DOI: 10.1007/S00438-007-0243-Z |
0.301 |
|
| 2007 |
Eustice M, Yu Q, Lai CW, Hou S, Thimmapuram J, Liu L, Alam M, Moore PH, Presting GG, Ming R. Development and application of microsatellite markers for genomic analysis of papaya Tree Genetics & Genomes. 4: 333-341. DOI: 10.1007/S11295-007-0112-2 |
0.33 |
|
| 2005 |
Freitas TA, Saito JA, Hou S, Alam M. Globin-coupled sensors, protoglobins, and the last universal common ancestor. Journal of Inorganic Biochemistry. 99: 23-33. PMID 15598488 DOI: 10.1016/J.Jinorgbio.2004.10.024 |
0.319 |
|
| 2004 |
Donachie SP, Hou S, Lee KS, Riley CW, Pikina A, Belisle C, Kempe S, Gregory TS, Bossuyt A, Boerema J, Liu J, Freitas TA, Malahoff A, Alam M. The Hawaiian Archipelago: A microbial diversity hotspot Microbial Ecology. 48: 509-520. PMID 15696384 DOI: 10.1007/S00248-004-0217-1 |
0.328 |
|
| 2004 |
Hou S, Saw JH, Lee KS, Freitas TA, Belisle C, Kawarabayasi Y, Donachie SP, Pikina A, Galperin MY, Koonin EV, Makarova KS, Omelchenko MV, Sorokin A, Wolf YI, Li QX, ... ... Alam M, et al. Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy. Proceedings of the National Academy of Sciences of the United States of America. 101: 18036-41. PMID 15596722 DOI: 10.1073/Pnas.0407638102 |
0.347 |
|
| 2004 |
Donachie SP, Bowman JP, Alam M. Psychroflexus tropicus sp. nov., an obligately halophilic Cytophaga-Flavobacterium-Bacteroides group bacterium from an Hawaiian hypersaline lake. International Journal of Systematic and Evolutionary Microbiology. 54: 935-40. PMID 15143045 DOI: 10.1099/Ijs.0.02733-0 |
0.302 |
|
| 2004 |
Freitas TA, Hou S, Dioum EM, Saito JA, Newhouse J, Gonzalez G, Gilles-Gonzalez MA, Alam M. Ancestral hemoglobins in Archaea. Proceedings of the National Academy of Sciences of the United States of America. 101: 6675-80. PMID 15096613 DOI: 10.1073/Pnas.0308657101 |
0.325 |
|
| 2003 |
Freitas TA, Hou S, Alam M. The diversity of globin-coupled sensors. Febs Letters. 552: 99-104. PMID 14527668 DOI: 10.1016/S0014-5793(03)00923-2 |
0.336 |
|
| 2003 |
Boudko D, Yu HS, Ruiz M, Hou S, Alam M. A time-lapse capillary assay to study aerotaxis in the archaeon Halobacterium salinarum. Journal of Microbiological Methods. 53: 123-6. PMID 12609731 DOI: 10.1016/S0167-7012(02)00227-0 |
0.613 |
|
| 2002 |
Hou S, Belisle C, Lam S, Piatibratov M, Sivozhelezov V, Takami H, Alam M. A globin-coupled oxygen sensor from the facultatively alkaliphilic Bacillus halodurans C-125. Extremophiles : Life Under Extreme Conditions. 5: 351-4. PMID 11699649 DOI: 10.1007/S007920100220 |
0.343 |
|
| 2001 |
Hou S, Freitas T, Larsen RW, Piatibratov M, Sivozhelezov V, Yamamoto A, Meleshkevitch EA, Zimmer M, Ordal GW, Alam M. Globin-coupled sensors: a class of heme-containing sensors in Archaea and Bacteria. Proceedings of the National Academy of Sciences of the United States of America. 98: 9353-8. PMID 11481493 DOI: 10.1073/Pnas.161185598 |
0.342 |
|
| 2000 |
Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, ... ... Alam M, et al. Genome sequence of Halobacterium species NRC-1. Proceedings of the National Academy of Sciences of the United States of America. 97: 12176-81. PMID 11016950 DOI: 10.1073/Pnas.190337797 |
0.402 |
|
| 2000 |
Hou S, Larsen RW, Boudko D, Riley CW, Karatan E, Zimmer M, Ordal GW, Alam M. Myoglobin-like aerotaxis transducers in Archaea and Bacteria. Nature. 403: 540-4. PMID 10676961 DOI: 10.1038/35000570 |
0.663 |
|
| 1998 |
Brooun A, Bell J, Freitas T, Larsen RW, Alam M. An archaeal aerotaxis transducer combines subunit I core structures of eukaryotic cytochrome c oxidase and eubacterial methyl-accepting chemotaxis proteins. Journal of Bacteriology. 180: 1642-6. PMID 9537358 DOI: 10.1128/Jb.180.7.1642-1646.1998 |
0.358 |
|
| 1997 |
Brooun A, Zhang W, Alam M. Primary Structure and Functional Analysis of the Soluble Transducer Protein HtrXI in the Archaeon Halobacterium salinarium Journal of Bacteriology. 179: 2963-2968. PMID 9139915 DOI: 10.1128/Jb.179.9.2963-2968.1997 |
0.308 |
|
| 1996 |
Zhang W, Brooun A, Mueller MM, Alam M. The primary structures of the Archaeon Halobacterium salinarium blue light receptor sensory rhodopsin II and its transducer, a methyl-accepting protein. Proceedings of the National Academy of Sciences of the United States of America. 93: 8230-5. PMID 8710852 DOI: 10.1073/Pnas.93.16.8230 |
0.376 |
|
| 1996 |
Zhang W, Brooun A, McCandless J, Banda P, Alam M. Signal transduction in the archaeon Halobacterium salinarium is processed through three subfamilies of 13 soluble and membrane-bound transducer proteins. Proceedings of the National Academy of Sciences of the United States of America. 93: 4649-4654. PMID 8643458 DOI: 10.1073/Pnas.93.10.4649 |
0.319 |
|
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