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Bret R. Larget - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
Area:
Statistics
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Beck JJ, Larget B, Waller DM. Phantom species: adjusting estimates of colonization and extinction for pseudo-turnover Oikos. 127: 1605-1618. DOI: 10.1111/Oik.05114  0.339
2017 Shim H, Larget B. BayesCAT: Bayesian co-estimation of alignment and tree. Biometrics. PMID 28099991 DOI: 10.1111/Biom.12640  0.605
2016 Alger SJ, Larget BR, Riters LV. A novel statistical method for behaviour sequence analysis and its application to birdsong. Animal Behaviour. 116: 181-193. PMID 27667850 DOI: 10.1016/J.Anbehav.2016.04.001  0.315
2016 Baum DA, Ané C, Larget B, Solís-Lemus C, Tung Ho LS, Boone P, Drummond C, Bontrager M, Hunter S, Saucier B. Statistical evidence for common ancestry: Application to primates. Evolution; International Journal of Organic Evolution. PMID 27139421 DOI: 10.1111/Evo.12934  0.335
2015 Stenz N, Larget B, Baum DA, Ané C. Exploring tree-like and non-tree-like patterns using genome sequences: An example using the inbreeding plant species Arabidopsis thaliana (L.) Heynh. Systematic Biology. PMID 26117705 DOI: 10.1093/Sysbio/Syv039  0.479
2015 Wang Z, He Q, Larget B, Newton MA. A multi-functional analyzer uses parameter constraints to improve the efficiency of model-based gene-set analysis Annals of Applied Statistics. 9: 225-246. DOI: 10.1214/14-Aoas777  0.383
2014 Kim J, Larget B. Bayesian estimation of the phylogeography of African gorillas with genome-differentiated population trees. Biometrics. 70: 683-94. PMID 24750097 DOI: 10.1111/Biom.12169  0.609
2013 Larget B. The estimation of tree posterior probabilities using conditional clade probability distributions. Systematic Biology. 62: 501-11. PMID 23479066 DOI: 10.1093/Sysbio/Syt014  0.391
2012 Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology. 61: 539-42. PMID 22357727 DOI: 10.1093/Sysbio/Sys029  0.456
2012 Correa R, Stanga J, Larget B, Roznowski A, Shu G, Dilkes B, Baum DA. An assessment of transgenomics as a tool for identifying genes involved in the evolutionary differentiation of closely related plant species. The New Phytologist. 193: 494-503. PMID 22077724 DOI: 10.1111/J.1469-8137.2011.03949.X  0.358
2012 Kim J, Anthony NM, Larget BR. A Bayesian method for estimating evolutionary history Bayesian Analysis. 7: 917-974. DOI: 10.1214/12-Ba732  0.613
2010 Larget BR, Kotha SK, Dewey CN, Ané C. BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis. Bioinformatics (Oxford, England). 26: 2910-1. PMID 20861028 DOI: 10.1093/Bioinformatics/Btq539  0.399
2010 Ané C, Dewey CN, Kotha SK, Larget BR. Gene tree reconciliation: new developments in Bayesian concordance analysis with BUCKy Nature Precedings. DOI: 10.1038/Npre.2010.4625.1  0.331
2009 White MA, Ané C, Dewey CN, Larget BR, Payseur BA. Fine-scale phylogenetic discordance across the house mouse genome. Plos Genetics. 5: e1000729. PMID 19936022 DOI: 10.1371/Journal.Pgen.1000729  0.396
2009 Luo R, Larget B. Modeling substitution and indel processes for AFLP marker evolution and phylogenetic inference Annals of Applied Statistics. 3: 222-248. DOI: 10.1214/08-Aoas212  0.604
2009 Zheng L, Ives AR, Garland T, Larget BR, Yu Y, Cao K. New multivariate tests for phylogenetic signal and trait correlations applied to ecophysiological phenotypes of nine Manglietia species Functional Ecology. 23: 1059-1069. DOI: 10.1111/J.1365-2435.2009.01596.X  0.383
2008 Huelsenbeck JP, Ané C, Larget B, Ronquist F. A Bayesian perspective on a non-parsimonious parsimony model. Systematic Biology. 57: 406-19. PMID 18570035 DOI: 10.1080/10635150802166046  0.454
2008 Lakner C, van der Mark P, Huelsenbeck JP, Larget B, Ronquist F. Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics. Systematic Biology. 57: 86-103. PMID 18278678 DOI: 10.1080/10635150801886156  0.401
2007 Luo R, Hipp AL, Larget B. A Bayesian model of AFLP marker evolution and phylogenetic inference. Statistical Applications in Genetics and Molecular Biology. 6: Article11. PMID 17474877 DOI: 10.2202/1544-6115.1152  0.538
2007 Ané C, Larget B, Baum DA, Smith SD, Rokas A. Bayesian estimation of concordance among gene trees. Molecular Biology and Evolution. 24: 412-26. PMID 17095535 DOI: 10.1093/Molbev/Msl170  0.465
2006 Ronquist F, Larget B, Huelsenbeck JP, Kadane JB, Simon D, van der Mark P. Comment on "Phylogenetic MCMC algorithms are misleading on mixtures of trees". Science (New York, N.Y.). 312: 367; author reply 36. PMID 16627724 DOI: 10.1126/Science.1123622  0.339
2005 Larget B, Kadane JB, Simon DL. A Bayesian approach to the estimation of ancestral genome arrangements. Molecular Phylogenetics and Evolution. 36: 214-23. PMID 15893477 DOI: 10.1016/J.Ympev.2005.03.026  0.462
2005 Larget B, Simon DL, Kadane JB, Sweet D. A bayesian analysis of metazoan mitochondrial genome arrangements. Molecular Biology and Evolution. 22: 486-95. PMID 15525697 DOI: 10.1093/Molbev/Msi032  0.393
2004 Schloss PD, Larget BR, Handelsman J. Integration of microbial ecology and statistics: a test to compare gene libraries. Applied and Environmental Microbiology. 70: 5485-92. PMID 15345436 DOI: 10.1128/Aem.70.9.5485-5492.2004  0.318
2004 Huelsenbeck JP, Larget B, Alfaro ME. Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo. Molecular Biology and Evolution. 21: 1123-33. PMID 15034130 DOI: 10.1093/Molbev/Msh123  0.403
2002 Huelsenbeck JP, Larget B, Miller RE, Ronquist F. Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology. 51: 673-88. PMID 12396583 DOI: 10.1080/10635150290102366  0.377
2002 Larget B, Simon DL, Kadane JB. Bayesian phylogenetic inference from animal mitochondrial genome arrangements Journal of the Royal Statistical Society: Series B (Statistical Methodology). 64: 681-693. DOI: 10.1111/1467-9868.00356  0.435
2000 Huelsenbeck JP, Rannala B, Larget B. A Bayesian framework for the analysis of cospeciation. Evolution; International Journal of Organic Evolution. 54: 352-64. PMID 10937213 DOI: 10.1111/J.0014-3820.2000.Tb00039.X  0.304
1999 Mau B, Newton MA, Larget B. Bayesian phylogenetic inference via Markov chain Monte Carlo methods. Biometrics. 55: 1-12. PMID 11318142 DOI: 10.1111/J.0006-341X.1999.00001.X  0.461
1999 Larget B, Simon D. Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees Molecular Biology and Evolution. 16: 750-750. DOI: 10.1093/Oxfordjournals.Molbev.A026160  0.481
1992 Aldous D, Larget B. A tree-based scaling exponent for random cluster models Journal of Physics a: Mathematical and General. 25: L1065-L1069. DOI: 10.1088/0305-4470/25/17/009  0.341
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