Year |
Citation |
Score |
2022 |
Yang H, Shi X, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Genomic imbalance modulates transposable element expression in maize. Plant Communications. 100467. PMID 36307986 DOI: 10.1016/j.xplc.2022.100467 |
0.345 |
|
2022 |
Shi X, Yang H, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Effect of aneuploidy of a nonessential chromosome on gene expression in maize. The Plant Journal : For Cell and Molecular Biology. PMID 34997647 DOI: 10.1111/tpj.15665 |
0.368 |
|
2021 |
Shi X, Yang H, Chen C, Hou J, Hanson KM, Albert PS, Ji T, Cheng J, Birchler JA. Genomic imbalance determines positive and negative modulation of gene expression in diploid maize. The Plant Cell. PMID 33677584 DOI: 10.1093/plcell/koab030 |
0.363 |
|
2021 |
Yang H, Shi X, Chen C, Hou J, Ji T, Cheng J, Birchler JA. Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize. The Plant Cell. PMID 33656551 DOI: 10.1093/plcell/koab029 |
0.381 |
|
2020 |
Johnson AF, Hou J, Yang H, Shi X, Chen C, Islam MS, Ji T, Cheng J, Birchler JA. Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 32178980 DOI: 10.1016/J.Jgg.2020.02.002 |
0.497 |
|
2020 |
Shi X, Chen C, Yang H, Hou J, Ji T, Cheng J, Veitia RA, Birchler JA. The Gene Balance Hypothesis: Epigenetics and Dosage Effects in Plants. Methods in Molecular Biology (Clifton, N.J.). 2093: 161-171. PMID 32088896 DOI: 10.1007/978-1-0716-0179-2_12 |
0.484 |
|
2019 |
Xie J, Ji T, Ferreira MAR, Li Y, Patel BN, Rivera RM. Modeling allele-specific expression at the gene and SNP levels simultaneously by a Bayesian logistic mixed regression model. Bmc Bioinformatics. 20: 530. PMID 31660858 DOI: 10.1186/S12859-019-3141-6 |
0.492 |
|
2019 |
Zhao Z, Meihls LN, Hibbard BE, Ji T, Elsik CG, Shelby KS. Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population. Scientific Reports. 9: 4896. PMID 30894586 DOI: 10.1038/S41598-019-41067-7 |
0.414 |
|
2018 |
Hou J, Shi X, Chen C, Islam MS, Johnson AF, Kanno T, Huettel B, Yen MR, Hsu FM, Ji T, Chen PY, Matzke M, Matzke AJM, Cheng J, Birchler JA. Global impacts of chromosomal imbalance on gene expression in and other taxa. Proceedings of the National Academy of Sciences of the United States of America. PMID 30429332 DOI: 10.1073/Pnas.1807796115 |
0.532 |
|
2018 |
Ma C, Ji T. Detecting differentially expressed genes for syndromes by considering change in mean and dispersion simultaneously. Bmc Bioinformatics. 19: 330. PMID 30236056 DOI: 10.1186/S12859-018-2354-4 |
0.455 |
|
2018 |
Mordhorst BR, Murphy SL, Schauflinger M, Rojas Salazar S, Ji T, Behura SK, Wells KD, Green JA, Prather RS. Porcine Fetal-Derived Fibroblasts Alter Gene Expression and Mitochondria to Compensate for Hypoxic Stress During Culture. Cellular Reprogramming. 20: 225-235. PMID 30089028 DOI: 10.1089/Cell.2018.0008 |
0.399 |
|
2017 |
Chen Z, Hagen DE, Ji T, Elsik CG, Rivera RM. Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome. Scientific Reports. 7: 12667. PMID 28978943 DOI: 10.1038/S41598-017-13012-Z |
0.411 |
|
2016 |
Chen Z, Hagen DE, Wang J, Elsik CG, Ji T, Siqueira LG, Hansen PJ, Rivera RM. Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing. Epigenetics. 0. PMID 27245094 DOI: 10.1080/15592294.2016.1184805 |
0.508 |
|
2015 |
Ji T, Chen J. Modeling the next generation sequencing read count data for DNA copy number variant study. Statistical Applications in Genetics and Molecular Biology. PMID 26140731 DOI: 10.1515/Sagmb-2014-0054 |
0.301 |
|
2015 |
Chen Z, Hagen DE, Elsik CG, Ji T, Morris CJ, Moon LE, Rivera RM. Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction. Proceedings of the National Academy of Sciences of the United States of America. 112: 4618-23. PMID 25825726 DOI: 10.1073/Pnas.1422088112 |
0.484 |
|
2015 |
Yan Z, Hossain MS, Arikit S, Valdés-López O, Zhai J, Wang J, Libault M, Ji T, Qiu L, Meyers BC, Stacey G. Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation. The New Phytologist. 207: 748-59. PMID 25783944 DOI: 10.1111/Nph.13365 |
0.317 |
|
2014 |
Ji T, Liu P, Nettleton D. Estimation and Testing of Gene Expression Heterosis. Journal of Agricultural, Biological, and Environmental Statistics. 19: 319-337. PMID 25435758 DOI: 10.1007/S13253-014-0173-2 |
0.637 |
|
2014 |
Schenewerk AL, Ramírez FÍ, Foote C, Ji T, Martínez-Lemus LA, Rivera RM. Effects of the use of assisted reproduction and high-caloric diet consumption on body weight and cardiovascular health of juvenile mouse offspring. Reproduction (Cambridge, England). 147: 111-23. PMID 24163396 DOI: 10.1530/Rep-13-0354 |
0.31 |
|
2013 |
Coble DJ, Sandford EE, Ji T, Abernathy J, Fleming D, Zhao H, Lamont SJ. Impacts of Salmonella enteritidis infection on liver transcriptome in broilers. Genesis (New York, N.Y. : 2000). 51: 357-64. PMID 23097340 DOI: 10.1002/Dvg.22351 |
0.43 |
|
2012 |
Ji T, Liu P, Nettleton D. Borrowing information across genes and experiments for improved error variance estimation in microarray data analysis. Statistical Applications in Genetics and Molecular Biology. 11: Article 12. PMID 22611597 DOI: 10.1515/1544-6115.1806 |
0.56 |
|
2011 |
Jovanović B, Ji T, Palić D. Gene expression of zebrafish embryos exposed to titanium dioxide nanoparticles and hydroxylated fullerenes. Ecotoxicology and Environmental Safety. 74: 1518-25. PMID 21513982 DOI: 10.1016/J.Ecoenv.2011.04.012 |
0.413 |
|
2009 |
Swanson-Wagner RA, DeCook R, Jia Y, Bancroft T, Ji T, Zhao X, Nettleton D, Schnable PS. Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science (New York, N.Y.). 326: 1118-20. PMID 19965432 DOI: 10.1126/Science.1178294 |
0.615 |
|
2009 |
Springer NM, Ying K, Fu Y, Ji T, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, Iniguez AL, Barbazuk WB, Jeddeloh JA, Nettleton D, Schnable PS. Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. Plos Genetics. 5: e1000734. PMID 19956538 DOI: 10.1371/Journal.Pgen.1000734 |
0.554 |
|
2009 |
Liu S, Yeh CT, Ji T, Ying K, Wu H, Tang HM, Fu Y, Nettleton D, Schnable PS. Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. Plos Genetics. 5: e1000733. PMID 19936291 DOI: 10.1371/Journal.Pgen.1000733 |
0.514 |
|
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